>input_sequence_83842
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----------------------------------------------------------------------------ATGA
AGACTGTCAACACGGTGTTCGTGGGTCTTACTCTTTTGGTGCTATCCTCAGGTAATCAACAGTT----------------
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----------------------------------------------------------------TAGTATTATGCATGTA
ATCCGACGTTCTTTTCTGTTGATTTTTCCTAATCCTTGTTCGTTTCTTTCTGAGATCTGCAGGCATGTTGATGCAGGCTT
CAGCCGAGCTCTGCAGTGACTCGATAGTTTCGCCAAGTTGTGATGGCAATGGCGTCTCATGTAAGGAGCTATGCAAAAGG
TTCATTTACATCGGCAAGGTCACTGCAACATGCGTTCCCCAGGGGTGTAAGTGCACGGTCTGCATACCACATGATTAA--
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>chr7A_1_TraesCS7A01G226100
AATAGGTTTTGCTGAGCTAGCATTGGAGTAAATGGAAAGAACGAGTGAGAGTTTGATGGACTGGCCTATAAGTGACTGTT
ATATCATCAATTTCATCGTTTTACTGTGGAAGAGTAGCTTCCAAGAGGCTCACACTACTAACACTGGCTGACACCAAGTT
CAAAACATGAAAGGACACCCATCCACGCACGAACAACACC-ACTCTCCTCTTAAAACAAATACCATCAG---------GC
CAACAAAATTCGTAAGAAAAACCAGCAGCCCAACACAATATCTAGATGATAAAAGAACGCCAGAACAGAACTAAAACCCA
AACCAACACAGATAAACTAGAACAAAATAA-----CTGACTGCAATAACATGC------TAAAGAAGAAAAAAGTTAATC
CTACAGGTGAAAAACGACGCAGCAAAGCGTGCGACAGCCTCTAGTACTAATTGACATTATAAACGAGGCATAC-GTCAAC
CACGCTGCCCTGTCTGGCAATTAATCCCTACTACCTTCGTCCGGATTTGTTGGCCCCCTTCGTATTTTGTGCCCAATTTT
CATCGTAGATTTGACTAACAAATTCTAAGTGGTATGTCACAAAACTTATATTGTTGGATTCATATTTGAAAGAGGTTTCC
AATGATATTATTTTTAGTTTATATAACTTA-TTTTTGATAGTTAAATCAAAGGTGAAAGTTTGATCCAAACTAAAAGGGT
GACTAATAAACAGGACGGAGGTAGTACCACAGAAGCCCCACTAT-GGCATGTAGTTGATCAGCGCGCACCATTTTCGGAG
CTCATGCTTAATTGCTTCGATCCATGGCATTTAGCGCGCGGCCTGGCTCGTGATCTTTTT-AATTGCCCCCGATTTCAGC
--TATTTGATTCCATATCAG-----CGTTACCGACCATCCATGCGTGTGCACTATAAATATCCTTCCAACCAAGGTTGAG
AGTGGCAGGCTTGCAACACCAGTAGCAGACACCTCACCTGATGAGTTTCCTTTTTA----TCTTTCATTCACAAGGATGA
AGACTGTCAACACGGTGTTCGTGGGTCTTACTCTTTTGGTGCTATCCTCAGGTAATCAACAGTT----------------
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----------------------------------------------------------------TAGTATTATGCATGTA
ATCCGACGTTCTTTTCTGTTGATTTTTCCTAATCCTTGTTCGTTTCTTTCTGAGATCTGCAGGCATGTTGATGCAGGCTT
CAGCCGAGCTCTGCAGTGACTCGATAGTTTCGCCAAGTTGTGATGGCAATGGCGTCTCATGTAAGGAGCTATGCAAAAGG
TTCATTTACATCGGCAAGGTCACTGCAACATGCGTTCCCCAGGGGTGTAAGTGCACGGTCTGCATACCACATGATTAAGC
ACGCGTTCGTTTTCCTGTGGTTAGTGGTGAAATAAGGTCTTGTTTTAGACAAGTTGTAATCAGGGCCTCAGGGGCAGCCA
GCCCTGAGTCACTACATTACTTGTCACTGCAGAATGTATTGATTTATAAGCCAATGTATTTTGCTTTTTTGATATGCAAA
AGGACAGAAAAGTATACCTGCATTTTGCCTTTTCATATTAACTTGGCCAAAGAATTTGTTAGATCACTCGAGATATATGA
GCGGAATTAGATAAACTAGATGAGGCCCCACGCGCTGCTGCGGAAACCTTGCTAAAAATGCATGAATAGTTGCTATCAAA
ACATCTAAAAACTAATAGAATGCAAATGTAAGCTTAAAAGAT-----AAAATGAGAAGTGCCTAAAAAGAGAGGGAAAAA
ATGTCATTTCTAACAAAATATGAAGGATGAACTCTAATATAAAGAATAACTGATGACTAATTTGCATGAAGTGATGATGT
GGTAACATTTGCATGCATACAGTAATGCAAAAATAAATGTAACTTATGGCTTGCATTTATCACATATTTATGTGGCATGG
TTGCATGACTAGAAAAAAAATAGATAGTAGGTTCTAACTATTTAAGAATAAAAGACAATAGAAGTTGTGCATTGTGATGC
ACATAATTCACTCATATTGTGAAATTCACTTCTCAAGCTTATCTAAAAGGTACATGATGGGACAAAGAAAATAAAAATAC
TTATAAGGTCTAACAATAATAATTT-ATGACAATATGCATTGCTCCACGCAGTCGCCGGAGGGTCACACCTCCTTCTCTA
AACAAAAACAAAGGCAATAGATTGCTCGGCCTAAGTGGTTATAGCTATATAAAAAACTATCAACAACAAAGATAATATAC
TGTAACATTTATGAGAAAAAGTTGTAACAATTTTGGTTTTGATACCTCCTGCTCTTGGAGTATATATGTTCATGTCGAAC
ACTATGCATATCATTCCTTGTAAACCAAAAGAACATTATTTTGA
>chr7D_1
AATAGGTTTTACTGAGCTAGCATTGGAGTAAATGGAAAAAATGAGCGAGAGTTTGATGGACTGGCCTATAAGTGACTGTT
ATATCGTCAATTTCATCGTTTTACCGTGGAATAGTAGCTTCCAAGAGGCTCACGCTACTAACACTGGATGACACCAAGTT
CAAAACATGTAAGGGCACCCATCCACGCACGAACAACACCAACTCTCCTCTTAAAACAAATACCACCTTCGATGGCAAGC
CAACAAAATTCGTAAGAAAAACCAGCAGCCCAACACAATATCTAGATGATAAAACAACGCCAGAACATAACTAAAACCCA
AACCAACACAGATAAACCAGAACAAAATAA-----CCGACTGCAATAACATGC------TAAAGAAGAAAAAAGTTAATC
CTACGGGCGAAAAACGACGCAGCAAAGCGTGCGGCAGCCTCTAGTACTAATTGACATTACAAACGAGGCATGC-GTCAAC
CACGCTTCCCTGTCTGGCAATTAATCACTACTACCTTCGTCCGGGTTTGTTGGCCCCCTTCGTATTTTGT-CCCAACTTT
CATAGTAGATTTGACTAACAAATTCTGTGTGGTATGTCACAAAACTTATAATATTG-ATTCATATT------AGGTTTTC
AATTATACTATTTTTAGGTTATATAACTTATTTTTTGATAGTTAAATCAAATGTGAAAGTTTGACCCAAACTAAAAGGGT
GACTAATAAACAGGACGGAGGTAGTACCACAGAAGCCCCACTATGGGCATGTAGTTGATCAGCGCGCACCATTTTCGGAG
CTCATGCTTAATTGCTTCGATCCATGGCATTTAGCGCGCGGCCTGGCTCGTGATCTTTTT-AATTGCCCCCGATTTCAGC
--TATTTGATTCCATATCAG-----CGTTACCGACCATCGATGCATGTGCACTATAAATATCCTTCCAACCAAGGTTGAG
AGTGGTAGGCTTGCAACACCAGTAGCAGACACCTCACCTGACAAGTTTCCTTTTTTTTTTTCTTTCATTCACAAGGATGA
AGACTGTCAACATGGTGTTCGTGGGTCTTGCTCTTTTGGTGCTATCCTCAGGTAGTCAACAGTT----------------
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----------------------------------------------------------------GAGTATTATGCATGTA
ATCCGACGTTCTTTTCTGTTGATTTTTCTTAATCCTCGTTCGTTTCTTTCTGAGATCTGCAGGCATGTTGATGCAGGCTT
CAGCGGAGCTCTGCAGTGACTCGATAGTTTCGCCAAGTTGTGATGGCAATGGCGTCTCATGTAAGGAGCTATGCAAAAGG
TTCATTTACATCGGCAAGGTCACTGCAACGTGCGTTCCCCAGGGGTGTAAGTGCACTGTCTGCATACCACATGATTAAGC
ACGCGTT-------------------------------------------------------------------------
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>chr7B_273
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------------------------------------------TAGATGATAAAACAACGCCAAGACATAACTAAAACCCA
AACCAACACAGATAAATCAGAACAAAACAACCCTGCCGACTGCAATATAAACATACTAATAAAGAAGAAGAAAGTTGATC
CGACGGTTG-AAAACGGCCCAGCAAAGCGTGCGGCAGCCTCTAGTACTAATTGACATTACAAACGAGGCATGCCGTCAAC
CAC-CTGCCCTGTCAGGCAATTAATCGC----------------------------------------------------
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------------------------TACCACAGAAGCCCAACTAT-GGCATGTAGTTGATCAGCGCGCACCATTTTGGGAT
C---TGTTTAATTGCTCCGATCCATGGCATTTAGCGCGCGGCCTGGCTCGTGATCTTTTTCAATTGCCCCTGATTTCAGC
TGTATTTGATTCCATATCGTATCAACGTTGCCGGCCATCCATGCGTGTGCACTATAAATATCCTTCCAACCAAGGTTGAG
AGTGGCAGTCTTGCAACACCAATAGCAGACACCTCACCTGGTAAGTTTCCTTTTT-----TCTTTCATTCACAAGGATGA
AGACTGTCAACATGGTGTTCGTGGGTCTTGCTCTTTTGGTGCTATCCTCAGGTAATCAACAGTTGAGTACTCCCTCGGTT
CCTAAATGTAAGTCTTTTTAGAGCTTCCACTATGAACTACATACGAAGCAAAATGAGTGAATCTACACTCTAAAATATGT
CTATATACATCCGTATATAGTTTGTAGTGAAATCTTTAAAAAGACTTACATTTAGAAACGGAGGGAGTATTATGCATGCA
ATCTGGCGTTCTTTTCTGTTGATTTTTCCTAATCCTCGTTCGTTTCTTTCTGAGATCTGCAGGCATGTTGATGCAGGCTT
CAGCAGAACTCTGCAGTGACTCGATAGTTTCGCCAAGTTGTGATGGCAATGGCGCCTCATGTAAGGAGCTATGCAAAAGG
TTTATTTACATCGGCAAGGTCACTGCAACATGCGTTCCCCAGGGGTGTAAGTGCACGGTCTGCATACCACATGATTAAGC
ACGCGTTCGTTTT------------GGTGAAATAAGGTCTTGTTTTAGTCAAGTTGTAATCAGGGCCTCAGGGGCAGCCA
GCCCTGAGTCACAACATTACTTGTCACTGCAGGTTGTATTGATTTATAAATCAATGTTGCT---TTTTTTGATATGCAAA
AGGACAAAAAAATATAACTGCACTTTGCCTTATC--ATTAACTTGGCCAAAGAATTTGTTAGATCGCTAGAGATATATGA
GCGGA-----ATAAACTAGATGATGCCCCACGCGGTGCTGGGGAAACCTTATTAAAAATGCATAAATAGTTGCTATGAAA
ACATCTAAAAACTAATAGAATGCAAATGTAAGCTTAAAAGATTAAAAAAAATGAGAAGTGCATAAAAAGAGA---AAAAA
ATGTCATTTCTAACAAAATATGAAGGGTGAACTCTAATATAAAGAATAATTGATGACTAATTTGCATGAAGTGATGATGT
GGCAACATTCGCATGCATAGAGTAATGCAAAAATAAATGTAATTTATGGCTCGCATTTATCACATATTTATGTGGCATGG
TTGCATGACTAGAAAAAA--TAGATAGTAGGTTGTAACTATTTAAGAATAAAAGACAATAGAAATTATGCATTGTGATGC
ACATAATTCACTCATATTGTGAAATTCGCTTCTCAAGCTTTTCTAAAAAGCACATGATGGGACAAAGAAAATAAAAATAC
TTGTAAGGTCCAACAATAATAATTTTATGGCAATATG-------------------------------------------
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>chr7D_1321
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----------------------------------------------------------------------------AAGC
ACGCGTTCGTTTTCCTGTGGTTAGTGGTGAAATAAGGTCTCGTTTTAGACAAGTTGTAATCAGGGCCTTAGGGGCAGCCA
GCGTTGAGTCACAACATTAGTTGTCACTGCAGAATGTATTGATTTATAAATCAAAGTATTTTGCTTTTTTTATATGCAAA
AGGACAGAAAAATATACCTGCATTTTGCCTTTTCATATTAACTTGGCCAAAGAATTTGTTAGATCACTCGAGGTATGTGA
GCGGAATTAGATAAACTAGATGATGCCCCACGCGCTGCTGCGGAAACCTTGCTAAAAATGTATAAATAGTTGCTATGAAA
ACATCTAAAAACTAATAGAATGCAAATGTAAGCTTAAAAGATAAAAAAAAATGAGAAGTGCATAAAAAGAGAG---AAAA
TTGTCATTTCTAGCAAAATATGAA---TGAACTCTAATATAAAGAATAACTGATGACTAATTTGCATGAA-----GATGT
GGCAACATTTGCATGCATAGAGTAATGCAAAAATAAATGTAATTTATGGCTTGCATTTATCACATATTTATGTGACATGG
TTGCATGATTAGAAAAAAA-TAGATAGTAGGTTGTAACTATTTAAGAATAAAAGACAATAGAAATTGCGCATTGTGATGC
ACATAATTCACTCATATTGTGAAATTCACTTCTCAAGCTTATCTAAAAGGCACATGATGGGACAAAGAAAATAAAAATAC
TTGTAAGGTCCAACAATAATAATTTTATGACAATATTCATTGCTCCACGCAGTCGCCGGAGGGTCACACCTCCTTCTCTG
AACAAAAACAAAGGTAATAGATCGCTCGGCCTGAGCGATTATAGCTATATAAAA-ACTATCAACAACAAAGGTAATATAC
TGTAACATTTATGAGGAAAAGTTGTAACAATTTTGGTTTTGATACCTCCTGCTCTTGGATTATATACGTTCATGTCGAAC
ACTATGAATATCATTCCTTGTAAACCAAAAGAACATTATTTTGA
>SNPs
----------S---------------------------S--S---S----------------------------------
-----S------------------S------S---------------------S-------------S------------
---------S----S--------------------------------------------------S-SS-----------
------------------------------------------------------S------------S------------
-----------------S------------------S-------------------------------------------
----S----------------------------S-------------------------S-----------S--------
--------------------------S-----------------S-------------------------S-----S---
---S----------------------SS----------------------S-S---S---------SSSSSS------S-
---S---S---------S---------------------------------S------------S---------------
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------------------------------------------S------------S------------------------
------------S----------------S--------------------------------------------------
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----------------------------------------------------------------S---------------
------------------------------------S-------------------------------------------
----S---------------------------------------------------------------------------
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------------S------------------------------------SS-----------------------------
-----------S--------------------------------------------------------------------
-----------------------S---------------------------------------S------------S---
-------------------------------------------------------------S-----------SS-----
--------------------------S-----------------------------------------------------
--S----------------S----------------------S-------------------------------------
-------------------S-------------S-----------------------------S----------------
--------------------------------------------------S-----------------------------
--S-------S--------------------------------------------------------------------S
--------------S-------S---------S--S-S----------------S----------------S--------
---------------S-------------------------------------------S------S-------------
------S-------------------------------------
>forward_525
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-------------------------CCCTACTACCTTCGTCCGGA-----------------------------------
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>reverse_2343
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----------------------TGCTCGGCCTAAGTGGTTAT--------------------------------------
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