>input_sequence_83828
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--------------------------------------------ATGAGGTTACTAGTTGGGATTGTGAGGCTTGTTGCT
CTGGTGTTGATGTTGCTCGTCGGTTCATCGGTTCACCAGGCGGTAGGAGTTGGTAAGTCATCTGTCATACTTTCTTTTGC
TGGATTATGAAGTGTTGATGCTTGTGATTTGTTTGATGATGAGTGAGTTCTGAAACTTGTTTCG-----TTCTTGTGGAT
GGTGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATGAGGTCCTA
CATGACCATGGACTACACCCGCGTCAAGCGGCGCACGCCCAAGCACAACTGA----------------------------
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>chr2B_1_TraesCS2B01G359700
AAACCAAATCCCCAA-AAATGTTTGCCCTCGATCAAGGCATGATCCATCCATCCTAACCATCACTGTCAATCTAGCTAGC
TAGCTCTAGGTGGCCACTTTCACGAACTATCAGGGTACTTAAAGCGGCAACAC---------------------------
------------------------------CCCAATCCCATGAGGCTAAGCTAGTGTTAGCACGGCAATCAACCAATGGC
ATGCACAGCAGATACAATTTCAAATCCCAGTGAGGCTTGGCAAATCAGCATGGGAATCTTGAGCAGATGATATCCAGGCC
ACCTAGCTAGCTAGACCCGGAGGCCATGAGGCTACTGAAGAATTAAGCTACTACTCCCTCCGTCCCGAAATTCTTGTCTT
AGATTTGTCTAGATACGGATGAATCTAATACTAAAACGTGACTTGATACATCCGTATTTAGACAAATCTAAGACAAGAAT
TTTGGGACGAAGGGAGTACTTCAAAGTTCAAACACAGTGCTAACTATGCAAAACCCATGCTCAGCAACACCTTTCATGGT
TTCATTCAAAACCACACACCCCACTCCACTACGGCACTACTCCATGTAGTTAGTACTACT-------GAACACTAGTTAA
TCGCGGCTTCGGTACTCGCGTGACCGAGCTGGTTAAACAAATCCCATGTGGCGCGGCCGAGTGGAGCTCACGTGAGGCGC
CATTAAACTAGCCGATCATCAGCTCACGGCCCCAGAAAGAAAGGCAGGG--GGGAGGTTAAACAAGGCCGGGGAGCTCCA
GGAACTATAGATTCTTCCCGTGGGATGCCATGCGAGGACCAAGGCAAGGAGGAGGAGGGGGACA-----------GAACG
GAGGTATTAAAATTTTCAGAGCCGTGTAAATCTCCTGTCCTTTGACTCGCGAGCTGTCGATGTCTTTGCTCCAATGCCCT
TGACCGGCTATATATACACACGCTAACCATACATACATACACTCTCAGGTGCATCAG---GTTAGCTGG-TTAAGGTGAG
AATCGGTTGAGAGGAGCAGAGCGC--AACGGGCGTGGAGAAGACATGAGGTTACTAGTTGGGATTGTGAGGCTTGTTGCT
CTGGTGTTGATGTTGCTCGTCGGTTCATCGGTTCACCAGGCGGTAGGAGTTGGTAAGTCATCTGTCATACTTTCTTTTGC
TGGATTATGAAGTGTTGATGCTTGTGATTTGTTTGATGATGAGTGAGTTCTGAAACTTGTTTCG-----TTCTTGTGGAT
GGTGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATGAGGTCCTA
CATGACCATGGACTACACCCGCGTCAAGCGGCGCACGCCCAAGCACAACTGATCC-------AGCTAGCTAGCTACAAGA
AGCTCTCAACCCTCTTTACCTCTATGCTCCGGCAGCAGCGACCATCTGCTGA----------------------------
-------------------------------------TCCACCTTC-TACTTCTTCAGTGTGTGTATGTTAGTATGTATG
TATCCGGCGTGCAGATG----TGTGCGCGCAAATTTTGCCCCCTGACCAAATGTTATTACTAGCCTAATCAC-----TAG
GATATATACGTACGCAGTTATAGTAAGTGAGTAGTAAGTACTTACCAGTAGTGTTCATTTTG------------------
---------------------TTCTTTTGGTGAAGTTGTGCTTATTTACCAA----------------------------
-------TCAATCATAATGGAACCGGAAAAGTCCACTGAAGGAGCATTCGCTGCACTACACTGCTTGTCTCTTGGCTGAT
GGTGTTGATCGATTTGGTGTTCATGCGCGCGCATTTGCTCATCTCACCATGGATTTACTAGCCGCGCT------------
--TCTCT-------GCTCCTCTCAGAAGATGACATGTAGCTAGGCAAACGCATTGTGTTAGGATTGCATTCGCCTACCCT
A------------------------------------------------------------------------------C
CATATCCATTCGTGCGGATAGTGTTTTGAATCTTGAG---AGTGGATTGGAGATGTCGCATCAGATGGCATTCTGCTTAA
AGTTTGAACAGTATGAGCGCGCGTGCTGTACTGTCAGCCTATCAGACACCAGAAGCGGCCCAACTCAAAAAGAAGAAAAG
ATACAAAGAAGCGGCGGCCATATATTTGGAACAATAGTTTCACCTGCTCACGAGACACTCAAATTAAAGGTCGTCGTAGA
CCTTATCTAAACCCTATAAGTATCACTACTACGTACATCACCCCTTTACAAGCTTCAGCTCAACGGCAGTGTTTTTCGTT
TGTTTTGAAAAAAATTGATAAAAGATTTATCACATTCATTAATTATGAAGATTGAAGAGTGCGTTACAAACCAATCGCAC
GGAGGTGACAAAAAGAAGAAGAAACCTATTCCCGGCATCTTAATACTTCCTTCTTTCCAAAATAAGTGTCGTTGATGGGT
CTGTTTATGGGTTTGTTACGATGCATGTTG
>chr2A_1
AAACCAAATCCCCAAAAAATGTTTGCCCTCGATCAAGGCATGATCCATCCTTCCTAACCATCACTGTCAATCTAGCTA-C
TAGCTCTAGGTGGCCACTTTCACGAACTATCAGGGTACTTAAAGCGGCGTCAGCATTCAGTAGGCAGTAGCCGCCGCCTC
TTTTTCGGCTTAAAAACTGCCCTGAGGACACCCAATCCCATGAGGCTAAGCTAGCGTTAGCACAGCAATCAACCAATGGC
ATGCACAACAAATGCAATTTCAAATCCCAGTGAGGCTTGGCAAATCAGCATGGGAATCTTGAGCAGATGATATTCAGGCT
ACCTAGCTAGCTAGGCCCAGAGGCCATGAGGCTACTGAAGAATCAAGTTCAAAT--------------------------
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-----------------------------------AGTGCTAACTAAACAAAACCCATGCTTAGCAACACCTTTCATGGT
TTCATTCAAAACCACACCCACCACTC--------CACTACTCCATGTAGTTAGTACTTAGTAGTACCAATCACTAGTTAA
TCGCGGCTTCGGTATTCGCGTGACCGAGCTGGTTAAACAAATCCCATGTGGCGCGGCCGAGTGGAGCTCACGTGAGGCGC
CATTAAACTAGCTGATCATCAGCTCACGGCCCCAGAAAGAAAGGCAGGGAGGGGAGGTTAAACAAGGCC-GGGAGCTCCA
GGAACTATAGATTCTTCCCGTGGGATGCCATGCGAGGACCAAGGCAAGGAGGAGGAGGAGGGAGGGGGACAGGACGGACG
CAGGTATTAAAA--TTCAGAGCCGTGTAAATCTCCTGTCCTTTGACCTGCGAGCTG------TCTTCGCTCCAATGCCCT
TGATCGGCTATATATATGCACCGA------ACATACATAGACACTCAGGTGCAGCAG---GTTAGCTGGATTGAGGTGAG
AATCAGTTGAGAGGAGCAGAGCGCGCAACGGGTGTGGAGAAGGCATGAGGTTGCTAGGTGGGATTGTGAGGCTTGTTGCT
CTGGTGTTGATGTTGGTCGTCGGTTCGTCGGTTCACCAGGCGGTGGGAGTTGGTAAGTCATCTGTCATACTTTCTTTTGC
TGGATTCTGAAGTGTTGATGTTTGCGATTTGCTTGGTGATGAGTGTGCTCTGAAACTTGTTTTG-----TTCTTGTGGAT
GGTGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATGAGGTCCTA
CATGACCATGGACTACACCCGCGTCAAGCGCCGCACGCCCAAGCACAACTGATTCAGCTA-----TAGCTAGCTAGAAGA
AAGCCTCTTGTCTCCGGGCTCTG--GCTCCTTCAGCAGCGACCGTCTGCTCAAATGTGTTAGCAGGGGAAGCTCTGGATT
CAGCTAGCGATCGAGAAGAAGCTCTCAGCTCCCCTAATCCTCCTTCTTACTTCTTTAGTA-GTATGTGTGTGTATGTATG
CGTCCGGCGTGCAGATCCATCTGTGCACGCAAATTTTGCCCCCTGACCAAATGTTATTACTACTAGCTTGATTAATTTAG
GATATATACTTACGCAGTTATTATGGTAGC-------------ACTAGCAGTGTTCATCTTTCAGTTACACTTTTGTAAG
AAGGTACTGTAGTAATGTGGATTCGTTTGGTGAAGTCCTGGTTATTTCCCCTGTAAGTGAGGAGTGATCATGCACTACTG
TAACATCTCAATCGTAATGGAACCAGACGAGCCCACTGAGCAGCATATGTTTGCTATATTGATTGATTGTCTCTATGGCC
GT--TCGATTGGTGCAGTTTTCATGCGCGCGCTTC-------CTCACGATGGATCACATTCGCCAACGCTCTATGGATCG
GCAGTTTGTAACTAGCACCTCTCAGAAGACGACATGCAG----GCAAATGCACTGTTTGACGAACGTTCAGAATATTGGT
TCTGCCCCAAAGATGACATATAAGCAAATGCTAAAGATTGCTATCAGCGACTGTTGCATTGCGGTGATGATAATATGGTC
CATATCCATTCGTGCGGATAGTATTTTGAATCTTCTG---AGGGGATCAGGGATGTCGCATCAGATGGCATTCTGCTTAA
AGTTTGAACAGTATGAGCGCGCGTGCTGTGCTAACAGCCTATCAGATACAAGAAGCGGCC--------------------
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>chr2D_1
AAACCAAATCCCCAAAAAATGTTTGCCCTCGATCAAGGCACGATCCATCCGTCCTAACCATCACTGTCAATCTAGCTA-C
TAGCTCTAGGTGGCCACTTTCACGAACTATCAGGGTACTTAAAGCGGCAACAC---------------------------
------------------------------CCCAATCCCATGAGGCTAAGCTAGTGTTAGCACAGCAATCAACCAATGGC
ATGCACAGCAAATGCAATTTCAAATCCCAGTGAGGCTTGGCAAATCAGCATGGGAATCTTGAGCAGATGATATCCAGGCT
ACCTACCTGGCT--------AGGCCATGAGGCTACTGAAGAATCAAGCCGCTTGG-------------------------
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---------------------------------------------AAACAAAACCCATGCTTAGCAACGCCAGCCGTTCA
TGAATTCAAAACCACATCCCCCACTC--------CGCCAG----------------TACT-------AATCACTAGTTAA
TCGCGGCTTCGGTATTCGCGTGACCGAGCTGGTTAAACAAATCCCATGTGGCGCGGCCGAGTGGAGCTCACGTGAGGCGC
CATTAAACTAGCTGATCATCAGCTCACGGCCCCAGAAAGGAAGGCAGGGAGGGGAGGTTAAACAAGGCCGGGGAG-----
--------------TTCCCGTGGGATGCCATGCGAGGACCAAGGCCA--------AGGAGGGAGGGGGACAGGACGGACG
CAAGTATTATAA--TTCAGAGCCGTGTAAATCTCCTGTCCTTTGACTTGCGAGCTG------TCTTTGCTCCAATGCCCT
TGACCGGCTATATATATGCAG--TAAACATACATACATACACGCTCAGGTGAAGAAGCAGGTTAGCTGGATTGAGGTGAG
AATCGGTTGAGAGGAGCAGAGCAC--AACTCA-----AGACGGCATGAGGTTACTAGTTGGGATTGTGAGGCTTGTTGCT
CTGATGTTGATGTTGGTCGTCGGTTTGTCAGTTCACCAGGCGGTAGGAGTTGGTAAGTCATATGAGCATCTTGCTCTTGC
TTGATTCTGAAGTGTTGATGTTTGCGATTTGTTTGATGACGAGTGAGTTCTGAAACTTGTTTTGCTTTGTTCTTGTGGGT
TGAGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATGAGGTCCTA
CATGACCATGGACTACACCCGCGTCAAGCGGCGCACGCCCAAGCACAACTGATTATTCAGCTAGCTAGCTAGCTAGAAGA
AAGCCTCTCATCTCCGGGCTCTG--GCTCCTTCAGCAGCGACCATCTGCTGAAATGTGACAGCAGGGGAAGCTCTCGATT
CAGCTAGCGGTCGAGAAGAAGCTCCCAGCTCTACTAATCCACCTTCTTACTTCTTCAGTA-GTATGTGTATGTA----TG
CGTCCGGCGTGCAGATCCATCTGTGCACGCAAATTTTGCCCCCTGACCAAATGTTATTACTACTAGCTTGATTAATTTGT
GATATATACTTACGCAGTTATTATGGTAGC-------------ACTAGCAGTGTTCATCTTTCAGTTACACTTTTGTAAG
AAGT-----TAGTTATGTGGATTCGTTTGGTGAAGTTCTGGTTATTTCCCCTGTAAGTGAGAAGTGATCATGTACTAGTG
TAACATCTCAATCGTAATGGAACCAGACGAGTCCACTGAGCAGCATATGTTTCCTATGTTGATTGCTT----CTATGGCC
GT--TCGATTGGTGCAGTTTTCATGGGCGCGCTTTT------CTCACGATAGATTACATTCACCAACC--CTATGGATCG
GCTCTCC-------GCTCCTGTCAGAAGATGACATGTAG----GCAAATGCACTGTTTGACGAACGTTCAGAATATTGGT
TCTGCCCCAAAGATGGCATATAAGCAAATGCTAAAGATCGCCATCAACGACAGTTGCATTGCGGTGATGATAATATGGTC
CATATCCATTCGTGCGGATAGTATTTTGAATCTTCTCAACAGGGGATCAGGGGTGTCGCATCAGATGGCATTCTGCTTAA
AGTTTGAACAGTATGAGCGCGCGTGCTGCGCTAACAGCCTATCGTATACAAGAAGCGGCC--------------------
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>SNPs
--------------------------------------------------S---------------------------S-
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---------------------------------------------------------------S----------------
----------S--S-----------------------------------------------------------------S
--------------S---S------------------------S-----S---SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SS-------------S------------------
-----------------S--------SSSSSSSS---------------------------------S-S----------
--------------S-----------------------------------------------------------------
------------S-------------------------------------------------------------------
----------------------------------------------------------S--SSS------------S---
S-----------SS---------------------------------S--------SSSSSS------------------
----------------SS---SS---S---------------S----------S------------------S-------
--------------------------------S---------S-------------------------------------
---------------S----------S-----------------------------------------------------
------S-------------S---S-------------------------------------S-----------------
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-----------------------------------------------------S---------------------S----
-SSS---SSSS---SSSS-SSSSSS-----SS------------------------------------------------
-----------------------------------------------------------SS--S-S---SS---------
SS--------------S---------S-----------------------------------SSSSSS-S-S--------
---------S-----------SS-SSSS-SSSSSSSSSSSSSS--S--S---------S--S------------------
------------------------S------------S--S------S--SS----------------------------
-------------S----------S--SS----------SSSSSSSS-SSS---SS--SSSSSSSSS-S---SSSSS-SS
-SSS-S---S-S-SSS--S-------------S---SSSSSS-----S-------SSS-SSS-SSS-S------------
---------------------------------------SSSS-----S---S---S-S-S--SS-SSSSSSSSSSSSS-
S-------------------------------------------------------------------------------
----------------------S-----------SS------S----SS-S-----------------------------
-----------------------------S--SS------------S--S----------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_391
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---------------------------------------------------TACTCCCTCCGTCCCGAAAT---------
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>reverse_2359
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--------------------------------------TTCACCTGCTCACGAGACAC----------------------
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