>input_sequence_83827
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----------------------------------------------------ATGAGGTTGCTAGGTGGGATTGTGAGGC
TTGTTGCTCTGGTGTTGATGTTGGTCGTCGGTTCGTCGGTTCACCAGGCGGTGGGAGTTGGTAAGTCATCTGTCATACTT
TCTTTTGCTGGATTCTGAAGTGTTGATGTTTGCGATTTGCTTGGTGATGAGTGTGCTCTGAAACTTGTTTT-----GTTC
TTGTGGATGGTGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATG
AGGTCCTACATGACCATGGACTACACCCGCGTCAAGCGCCGCACGCCCAAGCACAACTGA--------------------
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>chr2A_1_TraesCS2A01G322900
AAGCTACAGAGAG----TAGCTACCCAATGATGCCCGCGTTCATGAGTGCCATGCCGATCTTGACGACAAGGTAAAGAAA
GGCCAAGGAAACCAAATCCCCAAAAAATGTTTGCCCTCGATCAAGGCATGATCCATCCTTCCTAACCATCACTGTCAATC
TAGCTA-CTAGCTCTAGGTGGCCACTTTCACGAACTATCAGGGTACTTAAAGCGGCGTCAGCATTCAGTAGGCAGTAGCC
GCCGCCTCTTTTTCGGCTTAAAAACTGCCCTGAGGACACCCAATCCCATGAGGCTAAGCTAGCGTTAGCACAGCAATCAA
CCAATGGCATGCACAACAAATGCAATTTCAAATCCCAGTGAGGCTTGGCAAATCAGCATGGGAATCTTGAGCAGATGATA
TTCAGGCTACCTAGCTAGCTAGGCCCAGAGGCCATGAGGCTACTGAAGAATCAAGTTCAAAT------------------
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-------------------------------------------AGTGCTAACTAAACAAAACCCATGCTTAGCAACACCT
TTCATGGTTTCATTCAAAACCACACCCACCACTCC--------ACTACTCCATGTAGTTAGTACTTAGTAGTACCAATCA
CTAGTTAATCGCGGCTTCGGTATTCGCGTGACCGAGCTGGTTAAACAAATCCCATGTGGCGCGGCCGAGTGGAGCTCACG
TGAGGCGCCATTAAACTAGCTGATCATCAGCTCACGGCCCCAGAAAGAAAGGCAGGGAGGGGAGGTTAAACAAGGCC-GG
GAGCTCCAGGAACTATAGATTCTTCCCGTGGGATGCCATGCGAGGACCAAGGCAAGGAGGAGGAGGAGGGAGGGGGACAG
GACGGACGCAGGTATTAAAA--TTCAGAGCCGTGTAAATCTCCTGTCCTTTGACCTGCGAGC------TGTCTTCGCTCC
AATGCCCTTGATCGGCTATATATATGCACCGA------ACATACATAGACACTCAGGTGCAGCAG---GTTAGCTGGATT
GAGGTGAGAATCAGTTGAGAGGAGCAGAGCGCGCAACGGGTGTGGAGAAGGCATGAGGTTGCTAGGTGGGATTGTGAGGC
TTGTTGCTCTGGTGTTGATGTTGGTCGTCGGTTCGTCGGTTCACCAGGCGGTGGGAGTTGGTAAGTCATCTGTCATACTT
TCTTTTGCTGGATTCTGAAGTGTTGATGTTTGCGATTTGCTTGGTGATGAGTGTGCTCTGAAACTTGTTTT-----GTTC
TTGTGGATGGTGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATG
AGGTCCTACATGACCATGGACTACACCCGCGTCAAGCGCCGCACGCCCAAGCACAACTGATTCAGCTA-----TAGCTAG
CTAGAAGAAAGCCTCTTGTCTCCGGGCTCTG--GCTCCTTCAGCAGCGACCGTCTGCTCAAATGTGTTAGCAGGGGAAGC
TCTGGATTCAGCTAGCGATCGAGAAGAAGCTCTCAGCTCCCCTAATCCTCCTTCTTACTTCTTTAGTAGTATGT-----G
TGTGTATGTATGCGTCCGGCGTGCAGATCCATCTGTGCACGCAAATTTTGCCCCCTGACCAAATGTTATTACTACTAGCT
TGATTAATTTAGGATATATACTTACGCAGTTATTATGGTAGC-------------ACTAGCAGTGTTCATCTTTCAGTTA
CACTTTTGTAAGAAGGTACTGTAGTAATGTGGATTCGTTTGGTGAAGTCCTGGTTATTTCCCCTGTAAGTGAGGAGTGAT
CATGCACTACTGTAACATCTCAATCGTAATGGAACCAGACGAGCCCACTGAGCAGCATATGTTTGCTATATTGATTGATT
GTCTCTATGGCCGT--TCGATTGGTGCAGTTTTCATGCGCGCGCTTC-------CTCACGATGGATCACATTCGCCAACG
CTCTATGGATCGGCAGTTTGTAACTAGCACCTCTCAGAAGACGACATGCAG----GCAAATGCACTGTTTGACGAACGTT
CAGAATATTGGTTCTGCCCCAAAGATGACATATAAGCAAATGCTAAAGATTGCTATCAGCGACTGTTGCATTGCGGTGAT
GATAATATGGTCCATATCCATTCGTGCGGATAGTATTTTGAATCTTCTG---AGGGGATCAGGGATGTCGCATCAGATGG
CATTCTGCTTAAAGTTTGAACAGTATGAGCGCGCGTGCTGTGCTAACAGCCTATCAGATACAAGAAGCGGCCATATATTT
GTGCGTGTTTTTTGAAATGCTCAACTGCTCACGAGACACTTAAATTAAAGGTCTTCATAGCTCTCCTCTACACCCTATCA
GTATCAATATACTCCCTCCGTCCAATAATATAAAAACGTTTTTGACACTACACTAGTACCA
>chr2D_1
AAGCTACAAAGAGTAGCTAGCTACCCAATGATGCG-GCGTTCATGAGTGGCATGCCGATCTTGACGACAAGGTAAAGAAA
GGCAAAGGAAACCAAATCCCCAAAAAATGTTTGCCCTCGATCAAGGCACGATCCATCCGTCCTAACCATCACTGTCAATC
TAGCTA-CTAGCTCTAGGTGGCCACTTTCACGAACTATCAGGGTACTTAAAGCGGCAACAC-------------------
--------------------------------------CCCAATCCCATGAGGCTAAGCTAGTGTTAGCACAGCAATCAA
CCAATGGCATGCACAGCAAATGCAATTTCAAATCCCAGTGAGGCTTGGCAAATCAGCATGGGAATCTTGAGCAGATGATA
TCCAGGCTACCTACCTGGCT--------AGGCCATGAGGCTACTGAAGAATCAAGCCGCTTGG-----------------
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-----------------------------------------------------AAACAAAACCCATGCTTAGCAACGCCA
GCCGTTCATGAATTCAAAACCACATCCCCCACTCCGCCAG------------------------TACT-------AATCA
CTAGTTAATCGCGGCTTCGGTATTCGCGTGACCGAGCTGGTTAAACAAATCCCATGTGGCGCGGCCGAGTGGAGCTCACG
TGAGGCGCCATTAAACTAGCTGATCATCAGCTCACGGCCCCAGAAAGGAAGGCAGGGAGGGGAGGTTAAACAAGGCCGGG
GAG-------------------TTCCCGTGGGATGCCATGCGAGGACCAAGGCCA--------AGGAGGGAGGGGGACAG
GACGGACGCAAGTATTATAA--TTCAGAGCCGTGTAAATCTCCTGTCCTTTGACTTGCGAGC------TGTCTTTGCTCC
AATGCCCTTGACCGGCTATATATATGCAG--TAAACATACATACATACACGCTCAGGTGAAGAAGCAGGTTAGCTGGATT
GAGGTGAGAATCGGTTGAGAGGAGCAGAGCAC--AACTCA-----AGACGGCATGAGGTTACTAGTTGGGATTGTGAGGC
TTGTTGCTCTGATGTTGATGTTGGTCGTCGGTTTGTCAGTTCACCAGGCGGTAGGAGTTGGTAAGTCATATGAGCATCTT
GCTCTTGCTTGATTCTGAAGTGTTGATGTTTGCGATTTGTTTGATGACGAGTGAGTTCTGAAACTTGTTTTGCTTTGTTC
TTGTGGGTTGAGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATG
AGGTCCTACATGACCATGGACTACACCCGCGTCAAGCGGCGCACGCCCAAGCACAACTGATTATTCAGCTAGCTAGCTAG
CTAGAAGAAAGCCTCTCATCTCCGGGCTCTG--GCTCCTTCAGCAGCGACCATCTGCTGAAATGTGACAGCAGGGGAAGC
TCTCGATTCAGCTAGCGGTCGAGAAGAAGCTCCCAGCTCTACTAATCCACCTTCTTACTTCTTCAGTAGTATGT-----G
TATGTA----TGCGTCCGGCGTGCAGATCCATCTGTGCACGCAAATTTTGCCCCCTGACCAAATGTTATTACTACTAGCT
TGATTAATTTGTGATATATACTTACGCAGTTATTATGGTAGC-------------ACTAGCAGTGTTCATCTTTCAGTTA
CACTTTTGTAAGAAGT-----TAGTTATGTGGATTCGTTTGGTGAAGTTCTGGTTATTTCCCCTGTAAGTGAGAAGTGAT
CATGTACTAGTGTAACATCTCAATCGTAATGGAACCAGACGAGTCCACTGAGCAGCATATGTTTCCTATGTTGATTGCTT
----CTATGGCCGT--TCGATTGGTGCAGTTTTCATGGGCGCGCTTTT------CTCACGATAGATTACATTCACCAACC
--CTATGGATCGGCTCTCC-------GCTCCTGTCAGAAGATGACATGTAG----GCAAATGCACTGTTTGACGAACGTT
CAGAATATTGGTTCTGCCCCAAAGATGGCATATAAGCAAATGCTAAAGATCGCCATCAACGACAGTTGCATTGCGGTGAT
GATAATATGGTCCATATCCATTCGTGCGGATAGTATTTTGAATCTTCTCAACAGGGGATCAGGGGTGTCGCATCAGATGG
CATTCTGCTTAAAGTTTGAACAGTATGAGCGCGCGTGCTGCGCTAACAGCCTATCGTATACAAGAAGCGGCCATATA---
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>chr2B_4
---CTACAAAGAG----TAGCTACCCAATGATGCG-GCGTTCATGAGTGGCATGCCGATGTTGACGACAAGGTAAAGAAA
GGCAAAGGAAACCAAATCCCC-AAAAATGTTTGCCCTCGATCAAGGCATGATCCATCCATCCTAACCATCACTGTCAATC
TAGCTAGCTAGCTCTAGGTGGCCACTTTCACGAACTATCAGGGTACTTAAAGCGGCAACAC-------------------
--------------------------------------CCCAATCCCATGAGGCTAAGCTAGTGTTAGCACGGCAATCAA
CCAATGGCATGCACAGCAGATACAATTTCAAATCCCAGTGAGGCTTGGCAAATCAGCATGGGAATCTTGAGCAGATGATA
TCCAGGCCACCTAGCTAGCTAGACCCGGAGGCCATGAGGCTACTGAAGAATTAAGCTACTACTCCCTCCGTCCCGAAATT
CTTGTCTTAGATTTGTCTAGATACGGATGAATCTAATACTAAAACGTGACTTGATACATCCGTATTTAGACAAATCTAAG
ACAAGAATTTTGGGACGAAGGGAGTACTTCAAAGTTCAAACACAGTGCTAACTATGCAAAACCCATGCTCAGCAACACCT
TTCATGGTTTCATTCAAAACCACACACCCCACTCCACTACGGCACTACTCCATGTAGTTAGTACTACT-------GAACA
CTAGTTAATCGCGGCTTCGGTACTCGCGTGACCGAGCTGGTTAAACAAATCCCATGTGGCGCGGCCGAGTGGAGCTCACG
TGAGGCGCCATTAAACTAGCCGATCATCAGCTCACGGCCCCAGAAAGAAAGGCAGGG--GGGAGGTTAAACAAGGCCGGG
GAGCTCCAGGAACTATAGATTCTTCCCGTGGGATGCCATGCGAGGACCAAGGCAAGGAGGAGGAGGGGGACA--------
---GAACGGAGGTATTAAAATTTTCAGAGCCGTGTAAATCTCCTGTCCTTTGACTCGCGAGCTGTCGATGTCTTTGCTCC
AATGCCCTTGACCGGCTATATATACACACGCTAACCATACATACATACACTCTCAGGTGCATCAG---GTTAGCTGG-TT
AAGGTGAGAATCGGTTGAGAGGAGCAGAGCGC--AACGGGCGTGGAGAAGACATGAGGTTACTAGTTGGGATTGTGAGGC
TTGTTGCTCTGGTGTTGATGTTGCTCGTCGGTTCATCGGTTCACCAGGCGGTAGGAGTTGGTAAGTCATCTGTCATACTT
TCTTTTGCTGGATTATGAAGTGTTGATGCTTGTGATTTGTTTGATGATGAGTGAGTTCTGAAACTTGTTTC-----GTTC
TTGTGGATGGTGAAGGTGCTATCAGGCTGCACGACAGAAGGACGCACGGGGAGCAGTGGGCGGAGGAGAGGATGCAGATG
AGGTCCTACATGACCATGGACTACACCCGCGTCAAGCGGCGCACGCCCAAGCACAACTGATCC-------AGCTAGCTAG
CTACAAGAAGCTCTCAACCCTCTTTACCTCTATGCTCCGGCAGCAGCGACCATCTGCTGA--------------------
---------------------------------------------TCCACCTTC-TACTTCTTCAGTGTGTGTATGTTAG
TATGTA----TGTATCCGGCGTGCAGATG----TGTGCGCGCAAATTTTGCCCCCTGACCAAATGTTATTACTAGCCTAA
TCAC-----TAGGATATATACGTACGCAGTTATAGTAAGTGAGTAGTAAGTACTTACCAGTAGTGTTCATTTTG------
---------------------------------TTCTTTTGGTGAAGTTGTGCTTATTTACCAA----------------
-------------------TCAATCATAATGGAACCGGAAAAGTCCACTGAAGGAGCATTCGCTGCACTACACTGCTTGT
CTCTTGGCTGATGGTGTTGATCGATTTGGTGTTCATGCGCGCGCATTTGCTCATCTCACCATGGATTTACTAGCCGCGCT
--------------TCTCT-------GCTCCTCTCAGAAGATGACATGTAGCTAGGCAAACGCATTGTGTTAGGATTGCA
TTCGCCTACCCTA-------------------------------------------------------------------
-----------CCATATCCATTCGTGCGGATAGTGTTTTGAATCTTGAG---AGTGGATTGGAGATGTCGCATCAGATGG
CATTCTGCTTAAAGTTTGAACAGTATGAGCGCGCGTGCTGTACTGTCAGCCTATCAGACACCAGAAGCGGCC--------
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>SNPs
--------S-------------------------SS-------------S------------------------------
---S------------------------------------------------------S---------------------
--------------------------------------------------------SS--SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S-----------------
---------------S----------------------------------------------------------------
-S--------------------S---S----------------------------S-SSS-S------------------
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---------------------------S-------------------------------------SSSSSSSSSS-----
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------------------------------------------------------S-------------------S-----
-----------S-----------------SSS---------------S--S-----------------------------
------------S-------------------SS------S-------------------S----S--------------
----------------------------------------------------S---------------------------
---------------------------------------S---S---------S-S------------------------
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--------------------------------------S------------------------SS-SS------------
----------------SS---------------------------------S------S-------SS------------
---S-------------S--------------S------SS-------S--------------S----------------
-S----SSSS----------------------------------------------------------------------
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---------------SSSSSS----S----------------------S------------------------S------
----S----S---------------------------------S---------------------------------S--
S---------------------------------------------S-------------------S------S-----S
SS------------SS-S-SSSSSSS--S------------S------S-------------------------------
---------------------------S----------------------S--S----S----S----------------
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-----------------------------------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1052
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------------------------------------------------------------------------TTCGCTCC
AATGCCCTTGAT--------------------------------------------------------------------
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>reverse_2211
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--------------------------------------------------TGCTATCAGCGACTGTTGCA----------
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