>input_sequence_83810
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----ATGCGCTGGCCGACGTCGCCCTCCTTCTCCGCGGTGGCGGCGAAGCGGGCGGCGGTGGTTCTGGCTATGGTGGTGC
TGGTGCTGGCGATGGCTGTCGTCCGTGCGCGCGGCGTGGAAGGCGCCCGCGTGCCGCGACCGTCGACGGTGGCGCCTCCC
TCGACGACGAACATGACCTCCGGCGGCGGCAACAACGAGGGCGTGGAGATGCGGCGGCTGGCCGGAGGCGGGGCCTCCGC
GGAGGACGAGGACTACGGGTACGTGGACCCTCCGCCGGACACGAACCGCCGAGGGGCCGGCGCTCCCATCCCGCACAAGC
ACAACTGA------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G365300
TTGGAGGATGGCCGATTGCAGGGACATGATTGCATGTAGTATTTTTTTAGAGGGACCTGGTTGCTTTTAAAATATTTGCA
GGGACATGAGAGCTTTTTAAAAACATTTGCAGGGGTTGTTCTATAAAAAATGAGGACACATTTTTAAATTTGTAAAAGAA
CTAGGGAATTGGAGAATTTTTTACATGTGGAATTTTGTGGGAGACTGACATTTGGGCCCAACCTATCATAATGTCCAACC
TAAAGTTCCAATCTAATGTTGTTGAGTTTTACGCCACATCCGACCTAACAAGTCGACCCGACCTAATCGTGCTTAAACTT
AATCAACACAGTCATTTGAGTTTATTGAATTCATGCACCAGTCAGTTGCTCCAAAACTCCGGACTGATGGACAGAGGTGG
GCAATATATTTCAACACTCCCGCTCACGTCTAGGCTATCAGGGTTTTCTTAAACGGTATGCCAAAAAGGTAATAAGTTTT
TTTGAAAAACTTGAAGTAGGTAGTTCCTTAAACCCTAACCACAATACCGGCTCTGCTTGCCGAGATGACCTTTTCTTGCG
ACCTATAAATTACTATAGTTGTCAGGAAGAAGCCTGAAAGTCGCATTTTCTTTCTTCTGTCAATCTTGTGGGGAGGCTTG
GGAGGTTTTTGTGTGTGCAT-------ATCTTCGATCAATTAAACCGCGGCTGTGTGCCCATGA------TTGGAAGCAC
ATAAGCAAATGAGAAATTGGTATAGGCAGGACGACACAGGATGCAGAAACGAAT-AGTGGGTTTGGTACGGAGGGAGGGG
GAAGCGTGGACGGCGCGATCACCACCCCGCATTCCGGTGGCATCGGGTAACAGCCTCCCCGACGCCCGCTGTCCGCCCTC
CCGCTTC----CGTCCCGCGCCATGACGTG--------------------------CGGTCGACGGTCGTTTCGTTGCAC
CACGCCCTTTCCATGACCCCCTCTCGACCCCTCTAGCAAAGCTCCATCGCCGCACTGCATTTACCGGGCACGCGTCCGTC
CATCATGCGCTGGCCGACGTCGCCCTCCTTCTCCGCGGTGGCGGCGAAGCGGGCGGCGGTGGTTCTGGCTATGGTGGTGC
TGGTGCTGGCGATGGCTGTCGTCCGTGCGCGCGGCGTGGAAGGCGCCCGCGTGCCGCGACCGTCGACGGTGGCGCCTCCC
TCGACGACGAACATGACCTCCGGCGGCGGCAACAACGAGGGCGTGGAGATGCGGCGGCTGGCCGGAGGCGGGGCCTCCGC
GGAGGACGAGGACTACGGGTACGTGGACCCTCCGCCGGACACGAACCGCCGAGGGGCCGGCGCTCCCATCCCGCACAAGC
ACAACTGATCAC----TCGATCGACTCACCAGCCACTAGCTACGTACCACGCGTCGCGCGCCGGCCGCCGGCCCAAGCTT
GATCGATCTTGATCTTCTTTCCCCCTTTTCTCTTTGGTTCCCAAGATATGGTTGTTACCTGCTGCACTAATTAAGAGAGA
G----------AACCGATCTTTGTACTACCACGTTTGTTCATCAAGATATATATTTA-----CAGCTCGATTAGCTTAAC
TGATTAAGCTCGATCGGACTACTCTACAACATACAGTATCGATGTAGGTCTGTACGTACGTACAGCTG------CTCCAT
GCATGCATGGTGGATTGGTAGCTGAGCTAGCTGTTGTCTGCACTATTAGATTTGCATAGTGAATCTATGCTATGTATGCA
-TGCGTTGCATACATAATAACATTGCCAAAAAAAAGATGTTTGGAGAGGGAGAGGCAGGCTCTCCAAGGCTGAATATGAA
CGACGCAACGGTTGCGGCGAGGCCGAGCCAGGGACGGGGACAACACAATTGCACAAGGACCTTTCCGATGGCGGGATGAC
ACGACGTAACAATGCATGCGGGG-CGGAGGTTCAGAGGCGCGCGCGGGTGGGGGCATTTTAAGTTTTGACTGCTGACGGA
GG------------------------------------------------------------------------------
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------------------------------------TTAAGTTTCGACTGGCGGTAGGTTTGGACTGAGCCCGAGCTCAA
AATGGGGATGCCACAGTTGGCCAAGGTGC---------------------------------------------------
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--------------CACCGTGCAGTGTGAGGATGAGGGTTCAGAGGTGCAGGT------GAGCCTTTTCGTTTTGAGTGT
GGATTTTCTATGCTGCCATGTACATATTATATCCATAGGCCATCCATCTTTGCATCAATATTC---ATGATGTCTTTCTA
TAGAAAATTCTCCTTTTTCTCTCTCTTCCAAACAAGAGAACATTTGACCTTGAAATTTTGCATATCCACGACACGCAAGT
GTCACTCTGTGCCTAAAATGTTTCTGATTTTTTATGCAACATAACTTTGTCAAATTATAAAATTTTGAATATTTTTTTCA
TTTTAAATATTTCTGGTGCACCA
>chr5D_531
CTCA----------------------------------------------------------------------------
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------------------------------------------------------GCTGGCAGAGATGACCTTTGCTTGAG
ACCAATAAATTA----------CAGTAAGAAGCCTGAAAGTCGCATTTTCTTTCTTTTGTCATG--TGTGGGAAGGCTTG
GATGGTTTTT-TGTGTGCAT-------ATCAATT----ATCAAACCGCGGCTGTGTGCCTATGAATATGATTGGAAGCGC
ATGAGCAACTTGG---------TAGGCAGGATGACACAGGATGCAGAAACGAATTTGTGGGTTTGGTACGGAGGGAGGGG
-AAGCGTGGACGGCGCGATCACCACCCCGCATTCCGGTGGCGTCGGCTAACAGCCGTCCCGACGCGCGCTGTCAGCGCTC
CCGCTTCCTTGCGTCCCGCGCCATGACGTGCCGCCGCGCCCCCCCTCTTTATAGGCCGGTCGACGGTCGTTTCGTTGCAC
CACGCCCTTTCCATGACCCCCTCTCGATCCCTCTAGCAA-GCTCGACCGCCGCACTGC-TTTACCGGGCACGCACGCGTC
CACCATGCGCTGGCCGACGTCGCCCTCCTTGCCTGCGGTGGCGGCGAAGCGGGCGGCGGTGGTTCTGGC---------GC
TGGTGCTGGCGATAGCTGTCTGCCGTGCGCGCGGCGTGGAAGGCGCCCGCGTGCCGCGACTGCCGATGG-----------
----------ACATGAGCTCCGGCGGCGGCAATAACGCGGGCGTGGAGATGCGGTGGCAGGCCGGAGGCGGGGCCTCCCC
GGAGGACGAGGACTACGGGTACGTGGACCCTCCGCCGGACACGAACCGCCGAGGGGCCGGCGCGCCCATCCCGCACAAGC
ACAACTGAGCGATCGATCGATCGAGCCACCTGCTGTCACTAGC-TACCACGCGTCGCGCGCCGGCCGCTGGCCCAAGCTT
GATCGATCTTGATCCCTTTGGTTCC------------------AGATATTGTTACTACCTGCTGCACTAATTAAGAGAGA
ACAACACGTTTGATCGATGTTTG---TACCACGTTTGTTCATCAAGATATGTATTTAGTTTACAGCTCGATTAGCTTAAC
TGATTAAGCTCGATCGGACTAC-----AACATACAGTATCGATGTAGGTCTGTACGTACGTACAGCTGCTCCACCTCCAT
GCATGCATGATGGATTGGTAGCTGAGCTAGCTGTTGTCCGCACTTGTAGATTTCCATAGAGAATCTATGCTATGTATCCA
TTGCATTGCATTCAT-ATAGCACCGCCAAGAAAAAT--GTTTG-------------------------------------
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>chr5A_535
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------------------------------------------------------GCTGGCTGAGATGACCTTTGCTGGAG
ACCTATAAATTA----------CAGTAAGAAGCCTGAAAGTTGCATTTTCTTTCTTTTGTCATC--TGTGGGAAGGCTTG
GATG-TTTTT-TGTGTGCGTATCTTTGATCAATT----ATTAAACCGTGGCTTTGTGCCTTTGA------TTGGAAGCAC
ATAAGCAACTTGG---------TAGGCAGGACGACACAGTACGCGGAAACGAAT-TGTGGGTTTGGTATG----------
---GCGTGGACGGCGAGATCACCACCCCGCATTCCGGTGGCTTCGAGTAACAGCCGCCCCGACGCGCGCTGTCCGCGCTC
CCGCTTC----CGTCGCGCGCCGCGCC---------CGCCCGCCCTCTTTATAGGCCGGTCGACGGTCGTTTCGTTGCAC
CACGCCCTTTCCATGACCCCCTCTCGATCCCTCTAGCAA-GCTCGACCGCCGCACTGC-TTTAACGGGCACGCGTACGTC
CATCATGCGCTGGCCGACGTCGCCCTCCTTGTCCGCGGTGGCGGCGAAGCGGGCGGCGGTGGTTCTGGCA---------C
TGGTGCTGGCGATGGCTGTCGGCCGTGCGCGCGGTGTGGGAGGCGCCCGCGTGCCGCGACCGCCGACAGTG---------
---ACGACGAACATGAGCTTCGGCGGCGGGAACGACGAGGGCGTGGAGATGCGGCGGCTGGCCGGAGGCGGGGCCTCCGC
GGAGAACGAGGACTACGGGTACGTGGACCCTCCGCCGGACACCAACCGCCGAGGGGCCGGCGCGCCCATCCCGCACAAGC
ACAACTGAGCGATCGATCGATCGACTCATCTGCTGTCACTAGC-TACCACGCGTCGAGCGCCGGCCGCCGGCCCAAGCTT
GATCGATCGTGATCCTTTTTTCCCGTTTTCTCATTGGTCCCCAAAATATTGTTACTACCTGCTGCACTAATTAAGAGAGA
G----------GACCGATCTTTG---TACCACGTTTGTCCATCAAGATATGTA-------------------AGCTTAAC
TGATTAAGCTCGATCGGACTAC-----AACATACATTATCGATGTAGGTCTGTACGTACGTACAGCTGCTCCACCTCCAT
GCATGCATGGTGGATTGGTAGCTG-------TGTTGTCCGCGCTTGTAGATTGGCATACGGAATCTATGCTATGCATGCA
TTGCAT-------AC-ATAACATTGCCAAAAAAAAC--GTTTGGAGAGGGCGAGGCGGGAG-------------------
---------------------------------------------------------------TCTGATGGCGGGATGAC
ACGATGTAACCGTCCATGCGAGGACGGACGTTCAGAGGT----GCGGGTGGGGGCATTTTAAGTTTCGACTGCTGAGAGC
CTCTCTAGCAGACCTTGCATCCCGCCGGCCCGCAAAACGCGTTTGCAGTTCGCAAAAAAACGGCTTATGGACCGGTGCGG
ACGGTCGCAGATGCAGACCCTGCATAACGGACCCGTAAAAAAGATATTCACGTATATTCTTTCCCGTGTCTTCTTCTTCC
TCTGGCCTATGTTCATAATCAGCTCCCGTCGCCTATGGTAGTCGCCGAATCGATTCAGGAGCCAGCTGCCCCGTTGCCGG
ATGAATCCGGGAGCTAGCTAGCTATTCCATGGCCGGCTGGATCGAGGAGCTTGCTAGCTATAGCTCGTTCGTGGCCGGAT
GGATCAGGAGCTTGCTAGCTAGCTCGTTCGTGCCCGGGTAGCTGCTCGAGTCTCCAGTCACTGCTCCTGCGATCTACTCC
GCAAGCCAACGCCGCAGCAGCGGTAAACGGCGAGTTTCCAGCGAGATTCCGGCGAGTTCCATGGCGGAAGGTTATCGGAG
CCCGTGTGCGCACGGCAAAATTTCCTTGTCGCGTAGCGTTGACTGGTTTGCAGTTTCCTTTATATTTTGCCTCCAAATCT
GCAAATTAAAGGGTCGCGGGGATGGATTCTCAGGGGCCTGCAAATTTTTTACGGGTTTGACCATTTTTGCGGGGTTTATT
GGGGACGTTTTCTGACACCACGAAACTGAAAACGCGGATTTTTACGGGTTTGACCGCTTTTGTGGACTCTGCTACAGATG
CTCTGACGGAGGTTCAGAGGCGCGGGTGAGGGCATTTTAAGTTTCGACTGGCGGTAGGATTGGATTGAGATCGAGCTTAA
AATGGGGATGCTACAGTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCTCCCCGCGAGATGG
GGACGACGTGGCGTCACCATGAAGTTTAAGAATGAGGGTTCAGAGGTGCAGGCAGGCGAGAGCCTTTTAGTCTTGAGTGT
GGATTTTCTATGCTGCCATGTACATATTATATCTATAGGCTATCCATCTTTGCATCAAGATCCATGATGTTGTCTTTCTA
TAGAAAATTCTCTTTTTTCCA---CTTCCGAACAAGAAAAGATTTGACGTTGAAATTTTGCATATCAACGACACACAAGT
GTCACTCTGTGCGTAAAATGTGTCTGTTTTTTTATGCAACATAACATTGTCAAATTATAAATTTTGAATGTTATTTATCA
TTTTAAATATTTCTGATGCACCA
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S------------S----S-
------------SSSSSSSSSS---S------------------------------S-----SSSS------S-------
-SS-------S-------------------SSSSSSSS---------------------S--------------------
--------S-SS-SSSSSSSSS---------------------------------S------------------------
S----------------------------------------S-------------S---------S----------S---
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---------------------------S-----------S----S-S-----------S----------------S----
------------------------------S--------------------------------------SSSSSSSSS--
---------------------S----------------------------------------S--------SSSSSSSSS
SSS-------------S---------------------------------------------------------------
---------------------------------------------------------------S----------------
--------S-SS------------------S--SSSS-SSSS-S------------------------------------
--------------S-S---S-----------S-----S----------S---SS-------------------------
-----------S-----------SSS------------------------S-----------------------------
----------------------SSSSS-----------------------------------------------------
--------------------------------------S-----SS-------------S--------------------
----S------S---S-------------------SSS------------S-----S--SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------
----S-----SS-S------S-------S---------SSSSS-----------------------S---------SS-S
SS------------------------------------------------------------------------------
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----------------------------------------------------------S-----S----SS------S--
-----------S------S--SSSSSSSS---------------------------------------------------
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------------------S--S---S-S--S---------------------S---------------S--S--------
---------------------------------S------S-----------------S--S-------S----------
------------S------SSSSS-----S-------S--S-------S-----------------S-------S-----
------------S--------S----S------------------S---------------S---SS-SSS-S---S---
---------------S-------
>forward_387
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-----------------------------------------------GCTCCAAAACTCCGGACTGA-------------
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>reverse_1873
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--------------------------------GACGGGGACAACACAATTGC----------------------------
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