>input_sequence_83807
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-----------------------------------------------------------ATGGGCAGCGGGAGGCCGGCT
GCGTGGCGGACGTGCGCGGCGGTGGCGGTGGCTGCGTGCGCCTTGCCGGTGGCCTTGTCACTGGTGCTGCTCTGGCTGCC
CCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGACGAGGAGGAGGATGATGCAGATGTGCGGCGGCAGCACAA
GAAGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGAGGACCAGCTGGAG
CTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGACAAGTGCAGCGGTTGA-----------------
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>chr5B_1_TraesCS5B01G119100
CGGGAACGTCTCTAAAATAAATCCAGGAATAAATGCGAGCACCAGTATTTGAACCCTGGTGGGCTGGGATACCACAATCC
CTCTAACCATCCAACCACATGTTGGTTCGTCCTATTTTTTTTATTAGTAGGTATAGATATAGATAGACAAGTTGAAGCGA
TAAGCGCAGAAAATATCAAGTTTAAACGAGGGAAAGTATGAATATTCGGCAAATAAAATAAAATAAAATAAAGAGGGGTA
AAGTTATAAAGGCTGTCTATGGCGAACCTAAGTTTACACACAACATCTACAGTCTCCAAAACATTATAGAAGCACTCTGA
AACAGTTTTGATTGCTACGGATCTACCATGATTGTTGTGGCATGTACCCTGCACACCCTTTTCTTTAAAGAATATACAAA
AATCTGGCGATGGAATATTCTTATCATGATTAGGGTTTGACATGTTTACTAAAGAAAATTGTCATTC-------------
-------------------TCGTGACAACATAATTTGAGATAAAAAGGTTTGATTTGCTAAAGAAAATTGGCTCGCCACA
ACATAATTTACCATAAAAAACTTCTGATTTGGCATGATCAGAAAATTGTAGTTCGATTTATATTGGAGGTCCTTTTTTCG
ACAAAAAATATAGTTTTGTAGGATATCTTTTCTTACCGCGTGTAAACGCTCC----------------------------
---GTGGGGCGCAAAAAGAATGGAGAAAATATCATAACCACAACCTATACGTGTCACGCCCATTCCGATCCTGTCC---A
AGAAGTAAGAGAAAGGCGATCGATGACTCCCAGTAGCAGCATAAAAAGGTGGGAGAAGGTCA--C---------CACTGA
GTCGGACACGCCAACGCCTTCGGTCGAAGCAAAGCAACATCCGTCCATAATAAAAGCGGAAGCTTTGCTCTCACGGATAC
ACATCCCTTCTCCTCCCATCCAAATTCCAAACAAGCAAAAAGGCG-----GAGCAAGACCAAAGCGGCCAGTCTCTTGCA
ACCC---------TCGCCGCCGGCTGATCAGCTCCGGTGCGTGCGTGCG--------GGATGGGCAGCGGGAGGCCGGCT
GCGTGGCGGACGTGCGCGGCGGTGGCGGTGGCTGCGTGCGCCTTGCCGGTGGCCTTGTCACTGGTGCTGCTCTGGCTGCC
CCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGACGAGGAGGAGGATGATGCAGATGTGCGGCGGCAGCACAA
GAAGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGAGGACCAGCTGGAG
CTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGACAAGTGCAGCGGTTGACGGTCGCGCTTTCCTTG
TTCTTTTTGGAGGTCTGTAGGATGGCTAATGTGATACAGTACGCGTTTGGAAGAGGCCGAGACGATTTTGGTCGTGTTTT
GTGCTTGGTGAAATGAAACATCGAGAAATTAGAGACTACTGTACTACTTTTTTGTTTTTGCGAAATTAGAG---------
ACTACTGCTAGTATTTCTTGTCACCGTGATTAACAAGATGGGAAAGAAAGAGATCGGCTACTTAACTCA-----------
--------------TGTTCTTTCTTTTGCTGAAATCTGGGTATGCTGTTG--ACTTTCTAATCTGACTTGTGCCACTTGC
TTTGTTAAAATCCGCTCGCTTGTTGTGTCTTGTGCATCAAACGACTAGCCGCATCGCTTCTCTCCAAGTTGAAGCTACAC
GGAGGCATTTCTTTTGTAACAGCTGATCCAGATGCGATTAAAGTGAATTATCTTGAAATTTCCCTTTAAAACATTTGTTT
TCCCCTGAAACAGCTCATGAGGACGAGCTTAAACATACGCTTCTTGGCACATTGCTTCAAGCAAGAGCAAGCAAATCGCA
GGCAGCATCCATC-------------------------------------------------------------------
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-----------------------------CCATCCTGTAATTCCGGATAACGCAAGCCTTCCGTGGTTTGCGCGCTGGGT
TTAGATTCTACCGGTGCCAGGTTTCATCATCTCATCTCCCCGACGACGTGCCACGCGTCTCGTGAGGGAGAGTGCCGACA
TGACTGGAATCAACTCGCCTTGCGGGCCTTCACCGCACAAGCACAAACCACCCGCTCGGATAGAACCAGGGCACGTGAAT
GAACGTTCCGATGGATGCGCTCGGGCTGGACAAATCTTCTGTCCAGAATAATCCTACACTAATATCAGGATCGTAT--GA
CCAACTTTAGTACTAACCTAACGAATCTAAAATACCACAAAGATGCACGTACATCTTCGGTTGCTCCGTTAACCTTGAAC
CCTTTATTTATCTCTACATCGTGTCAAAGTCATACACTATTACTATATCACAAAGACGACAAATCAGGATTCAACTA
>chr5D_172
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-----------AATATCAAGTTTTAACGAGGGAAAGTATGAATATTCGGCAAACAAAATAAAATAAAAAT----GGGGTA
AAGTTAGGAAGGCTGTGTATGGCGAACCTAGGTTTACACACAACATCTACATTGTTCAAAACATTATAGAAGCATTCCGA
AACAATTTTGCTTGCTACGGATCTACCATGGTTGTTGTGGCATGTACCCGGCACACCCTTTTCTCTAGAAAATATATAAA
AATCTGACGATGGAATATTTTTATCAAGATTAGGATTTGACATGTTTACTAAAGAAAATTGTCATTCTCTTTTTTTTGCG
CAACAGAAAATTGTCATTCTCGTGACAACATAGTTTGGGGTAAAAAAGTTTGATTTGCTAAAGAAAATTGTCTCGCCACA
ACATAATTTACCATAAAAACTTTC-GATTTGGCATGATCAGCAAATTGTAGTTCGATTTATATTGGAGGTCCTTTTTTCG
ACAAAAAATATAGTTTTGTAGGATATTTTTTCTTACCGCGTGTAAACGCTCCTAGTGCCCACCCAAAACACATGGCGATG
GTGGTGGGGCGCTAAAAGAATCGAGAAAATATCATAACCACAACCTATACGTGTCACGCCCATTCCGATCCTGTCCAAGA
AGAAGTAAGAGAAAGGCGATCGATGACTCCTAGTAGCAGCATAAAAAGGTGGGAGGAATCACCACTGAGTCGGACACCGA
CTCGGACACGCCAACGCCTTCGGTCGAAGCAAAGCAACATCCGTCCATAATAAAAGCGGAAGCTTTGCTCTCACGGATAC
A----CCTTCTCCTCCCATCCAAATTCCAAAGAAGCAAAAAGGCGGAGCAGAGCAAGACCAAAGCGGCCAGTCTCTTGCA
AGCCTCGCCGCCGTCGCCGCCGGCTGATCAGCTCCGGTGCGTGCG------------GGATGGGCAGCGGGAGGCCGGCT
GCGTGGCGGACGTGCGCGGCGGCGGCGGCGGCTGCGTGCGCCGTGCCGGTGGCCTTGTCACTGGTGCTGCTCTGGCTGCC
CCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGGCGAGGAGGAGGATGATGCAGATGTGCGGCGGCAGCACAA
GAGGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGAGGATCAGCTGGAG
CTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGAACAGTGCAGCGGCTGACGGTCGCGTTTTCCTTG
TTCTTTTTGGAGGTCTGTAGGATGGCTAATGTGATACAGTACGAGTTTGGGAGAGGCCGAGACGATTTTGGTCGTGTTTT
GTTCTTGGTGAAATGGAACATCGAGAAATTAGGGACTACTAC-------TTTTGTTTTTGCGAAATTAGAGGAATTAGAG
ACTGCTGCTAGTATTTCTTGTCACCGTGATTAACAAGATGGGAAAGAAAGAGATCGGCTACTAAACTTGTGTCCTTTCCT
AAAAACTAAACTTGTGTTCTTTCTTTTGCTGAAATTTGGGTATGCTGTTG--ACTTTCTAATCTGACTTGTGCCACTTGC
TTTGTTAAAGTCCGCTCGCTCGT---------TGCATCAAACGACTAGCCGCATCGCTTCTCTCGAACTTGAAGCTACAC
GGAGACATTTCTTTTGTAACAGCTGGTCCAGATGCGATTAAAGTGAATTATCTTGAAATTTCCCTTTAGAACATTTGTTT
TCCCCTGAAACAGCT--------CGAGCTTAACCATACGCTTCTTGGCACATTGCTTCAAGCAAGAGCAAGCAAATCGCA
GGCAGCATCTATCGGAACTCTAACCTAACATGGTGAAGGAAAGTCACCGTGCTATAGTGTTTAGTGTAAAATGAAGAAGG
AAAGTTAGGGTCTGTTAGTAGATAATTAGTCAGTTGTTTACTGTTGGTAATTATATTTACTGTAGATATAAATAATTTAA
AATTAATTATGTTTCATCATCAATTTGTTTGTATGTAATTACTATAAATGTACACAGTAGATCATCAATTTACAAATTAA
TTTAAGTCGTTTTAACCATAATCATATGAATAGAAAGAAGAAAAATAAGTATATTATAGTTTCTCTAACTTTCCTTCACA
ATGTTAGAGGATTCGGTTCCGCATCTATTCCATCCTGTAATTCCGGATAACGCAAGCCTTCCGTGGTTTGCGCGCTGGGT
TTAGAGTCTACCGGTGCCAGGTTTCA-----TCATCTCCCCGACGACGTGCCACACGTCTCGTGAGGGAGAGTGCCGACA
TGACTGGAATCAGCTTGCCTTGCGGGCCTTCACCGCACAAGCACAAACCACCCACTCGGATAGAACCAGGGTACGTGAAT
GAAAATTCC-ATGGATGCGCTCAGGCTGGACAAATCTTCTGTCCAGAATAATCCTACACTAATACCAGGGTCGTATTTGA
CAAACTTTGGTAATAACCTAACGAATCTAAAATATCACAAAAATGCACGTACATTTTCGGTTGCTCCGTTAACCTTGAAC
CCTTTATTTATCTCTACATCATGTCAAAGTCATAC-------------CACAAAGACGACAAATCAGGATTCAACTA
>chr5A_720
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--------------------------------------------------------------TTCCGATCCTGTCC---A
AGAAGTAAGAGAAAGGCGATCGATGACTCCTAATAGCAGCATAAAAAGGTGGGAGAAGGTCACAC---------CACTGA
GTCGGACACGCCAACGCCTTCGGTCGAAGCAAAGCAACATCCGTCCATAATAAAAGCGGAAGCTTTGCTCTCAT------
------CTTCTCCTCCGATCCAAATTCCAAACAAGCAAAAAGGCG-----GAGCAAGACCAAAGCGGCCAGTCTCTTGCA
AGCCTCGCCGCCGTCGCCGCCGGCTGATCAGCTCCGGTGCGTGCGTGCGTGCGAGCGGGATGGGCAGCGGGAGGCCGGCT
GCGTGGCGGACGTGCGCGGCGGCGGCGGTGGCTGCGTGCGCCGTGCCGGTGGCCTTGTCACTGGTGCTGCTCTGGCTGCC
CCTGCTTTGCTGCGCCGTGGCCGTGGTCCGGTTCCGGCGGGCGAGGAGGAGGATGATGCAGATGTGCGGCGGCAGCACAA
GAGGCGGCGGGCGATTTGGGGCGGTTGACGCCGGCGATCGGCTGGGGCTGCTGCAGAAGTACCTCGAGGACCAGCTGGAG
CTCGTCGGCGCGGAGGCAGGGGGGCTCCTCCGCGACCTCAGACAAGGGAAGTGCAGCGGTTGACGGTCGCG-TTTCCTTG
TTCTTTTTGGAGGTCTGTAGGATGGCTAATGT--------------TTGGAAGAGGCCGAGACGATTTTGGTCGTGTTTT
GTGCTTTGTGAAATGAAACATCGAGAAATTAGAGACTACTAC-------TTTC-TTTTTGCGAAATTAGAGGAATTAGAG
ACTACTGCTAGCATTTCTTGTCACCGTGATTAACAAGATGGGAAAGAAAGAGATCGGCTACTAAACTTA-----------
--------------TGTTCTTTCTTTTGCTGAATTTTGGGTATGCTGTGTTCACTTTCTAATCTGACTTG---------C
TTTGTTAATACCCGCTCGCTCGTTGTGTCT--TGCATCAAACGACTAGCCGCATCGCTTCTCTCCAAGTTGAAGCTACAC
GGAGACATTTCTTTTGTAACAGCTGATCCAGACGCG-TTAAAGTGAATTATCTTGAAATTTCCCTTTAAAACAATT-TTT
TTTCCTGAAACAGCTCACGAGGACGAGCTTAAACATACGCTTCTTGGCACATTGCTTGAAGCAAGAGCAAGCAAATCGCA
GGCAGCATCTATC-------------------------------------------------------------------
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-----------------------------CCATCCTGTAATTCCGGATAACGCAAGCCTTGCGTGGTTTGCGCGCTGGGT
TTAGATTCTACCGGCGCCAGGTTTCA-----TCATCTCCCCGACGACGCGCCACGCGTCT--------------------
----------CAGCTCGCCTTGCGGGCCTTCACCGCACAAGCACAAACCACCCACTCGGATAGAACCAGGGCACGTGAAT
GAACATTCCGATGGATGCGCTCGGGCTGGACAAATCTTCTGTCCAGAATAATCCTACACTAATATCAGGGTCGTATTTGA
CCAACTTTGGT-ATAATCTAACGAATCTAAAATATCACAAAGATGCGCGTACATTTTCGGTTGCTCCGTTAACCTTGAAC
CCTTTATTTATCTCTACATCATGTCAAAGTCATACTAT-----TATATCACAAAGACGACAAATCAGGATTCAACTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS------------S-----------------------------S--------------SSSSSS------
------SS--------S-------------S--------------------S-S-S------------------S--S--
----S-----S-------------------S------------------S--------------S--S-S------S---
------S------------S------S-------S---------------------------------------------
--------------------------------S----S-S------S-----------------------S---------
-------------------SS---S----------------S--------------------------------------
--------------------------S-----------------------------------------------------
------------S--------S----------------------------------------------------------
------------------------------S-------------------------------------------------
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-SSSS---------------------------------------------------------------------------
-S------------------------------------------------------------------------------
----------------------S-------------------S-------------------------------------
----------------------------------------S---------------------------------------
--S-----------------------------------------------------------------------------
-----------------------------------------------S-----------------------S--------
-------------------------------------------S------------------------------------
----------------------------------------SSSSSSSSS-------------------------------
--------------------------------------------------------------S----S------------
-----------------------------------S--------------------------------------------
--------------------S---------SS------------------------------------------------
----S---------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
---------S----------------------------------------------------------------------
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--------------------------SSSSS-------------------------------------------------
------------S----------------------------------------S--------------------------
----S----------------------------------------------------------------S----------
--------S---S---------------------S-------------------S-------------------------
--------------------S--------------SS-SSSSS----------------------------------
>forward_831
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-----------AAAGGCGATCGATGACTCCC-------------------------------------------------
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>reverse_2427
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--------------------------TCATCTCATCTCCCCGACGA----------------------------------
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