>input_sequence_83799
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---------------------ATGCTAATAATTTTGAGCATCGAAATGTATTTCCACCATGC------------------
-------------GGGGAGAGAGAGAAGCAAGAACATCT-TCAGAACTAACCGAGATTTAGTCTCAGAGGTGGTCGCCAC
TGTTGGGGGAGCCGGAGGTAGGCGGAAGATGGCGGGGCCGGTAG------GGAAGGTGCTGCGCGAGCAAGGGTGGGTTG
GAGAAATAGC-----CGCGCCGTTCCTGTTGCAGCAGCAGTCAGCAGGCAGGGGCGCAGA----------CGGCGAGCAC
TGCAACTCCGGCAATGTCG---GGGGGCGAGGTTACCACAAATGCGAG-AAGGAG--------------CCCATGTTTCT
GACGAGGCTTGCTTGA----------------------------------------------------------------
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>chr4B_1_TraesCS4B01G131300
ATGCGTAGAAGTCCCAATCCTCAATCCAGCCCCGTGTTGTGCAGAGAGCCAGTGATTATACTTGTACAGTATTAAAATAA
GGAAGGCACTTTTTTTTTGAGGGAAAAATAAGGAAGGCACTTAGTAATACCCTGAACTGTGAGATACTGTGTAAACCTTT
CTCCATACAGAGGACTATTTTACGACCCAGCATCATGTGCCCTTGT-CTGTTGCAACC---ATTTCGCTTTCTCCCACTA
AGCATAAGCATAAATCGATCGCATTGTCCCTCGTAAGTAAATACGTGAAACCCAAACGCCACCTGCTCATCTTATTTCAA
CCGTGGCGGAGTTGTGATAATCATGCAAAAAACAAGAACTTCGCATAAGATTACCCAAGTAAACATCCAATGTGGGATGG
AAATGGTAATCACCAAACAAGAATGACGAAAAGTAGTATTTTGCAAAACATGTAAGCTCAAGAAAATACCATGAGTGATG
AAGGCTTGCACAAATCATCCATGCTTAGCAATACCCATTCTGATGCCTATCAACACCCTTTTCCGCGAAAAGCAAACTAC
AAAATTGTCTTGTCCTTCAGCTCATCTGGAAGATGCCAAGCCTGGTCCAGGCATGACATCAGCAAAATTAAGTACGAAAA
CTGCATAGGTGAGAGTTTATGGAAAACTAACAACGTTCAATGTTTCAATTAGTGAAGTATAT------------------
-----------------CACCAACTATCATGTAAGAATGTCTGCAAATGATTAACAGCAACACATGACAAACATCTGACC
TCTGAAGTCTGAAACATAGCTGATGGAAGTTCAGAGCTCTATCATTCTGATACACTCTGGGCTTATAATTCAGAAATGAC
GCTCACTACCAATCATACAACCTCCCGATTGTTAAAGAAACCAATGAATACTATGGAA-----------------TATCG
ATACCGCAAAGAAAGCGAGCACATCCAATTTTGTGT-CGATCTGAATTTGCCTTAAGTAGTAGGTAAAACAGACATGGCC
TTACCTAAAG----CTTGTAAATGCTAATAATTTTGAGCATCGAAATGTATTTCCACCATGC------------------
-------------GGGGAGAGAGAGAAGCAAGAACATCT-TCAGAACTAACCGAGATTTAGTCTCAGAGGTGGTCGCCAC
TGTTGGGGGAGCCGGAGGTAGGCGGAAGATGGCGGGGCCGGTAG------GGAAGGTGCTGCGCGAGCAAGGGTGGGTTG
GAGAAATAGC-----CGCGCCGTTCCTGTTGCAGCAGCAGTCAGCAGGCAGGGGCGCAGA----------CGGCGAGCAC
TGCAACTCCGGCAATGTCG---GGGGGCGAGGTTACCACAAATGCGAG-AAGGAG--------------CCCATGTTTCT
GACGAGGCTTGCTTGACGGG-CCGCGA-----------CCTCCTCAGAGCCCACGTGGGAGGCGGCCCGGCCCATCTAAG
AGGGTGCTCCCGTCCGTCCGTCCGTCCGTCCGTCCTTCCTCAAAACCCTGGGGATGGAGCTGAGCGGTGCCGCCGCCAAT
TAATCTGCGCCTCCGTCTCCTCCAACTCCGGCCACCACCGCCT------------GCAGAC-------------------
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--------------------------------------------------------------CTCAGCCTTAGCGTCCTC
CTGATGGGTCGCACGGTCAAGAAGGCCGGCAAGTCCAAGTCGAAGAAGGGCAAGGCACGCGATTCCGCAGCGCCTCTTCT
TATTTCCCTTCCCCTTTTCTCACCGATGATGATAAGCTTTCCCTAATATTCGTGTTTTCTTGGGCGGCGTTTGTTTGGTT
AGGGAGCGAAGAAGGCTGATGCTTCATCGTCTGCTGCCGCTGCGGTGGCTTCTGGTCCGGCAAAGGTGAGGGA-CCACTA
AATCCTTCGTTTCAATGCTATTTTATTCTTCTTTGATTGATTGATTGATTGATTGGAGCGTATAGATGCCTGCCTGGACG
----AGTTACTCCTATGATTAAATTGTTTTCT-----------------------TTCTGTTCTCATGCTAAGGATGCTG
CTGAAAACTGTGTATGTGGAATTACATATGTAAATGGTGGGTTTTGTTGTTAGGTGTGGCAACCAGGCGTAGATGCACTG
GAGGAGGGAGAGGAGCTCCAGTTTGATCCCGAGGCTTACAACTATCTCCGAGGATTTAGTATTGGCTGGCCTTGCTTGAG
GTGAAGCTATATTCTCCTTATCCGCAGGGAGGCATTGTTCGTGTTGTAATTTCAGACTAGGAAATTCTCTCTTCTCAACG
GGTTTCACTTTGCTTTGCAGCTTTGATGTTGTGCAAGATCAACTTGGGCTTGTCCGATCAGAGTTCCCACACACATTATA
TGGCGTTGCTGGAACTCAGGTTGCGTTCTCTCTTTACCCTTTTTAAAATTTACACAGAAAGGACTACTTCATGCTTTGTC
TTACCAGCAAACCTGAGATTGCAATTCAT
>chr4D_1
ATGCGTAGAAGTCCCAATCCTCAATCCAGCCCCGTGTTGTGCAGAGAGCCAGTGATTATACTTGTACAGTATTAAAATAA
GGAAGACACTTAGTATGATATACTGAATATGCATCCTTAAT--GTAATACCCTGAACTGTGAGATACTGTGTAAACCTTT
TTCCATACAGAGGACTATTTTACGACCCAGCATCATGTGCCCTTGT-CTGTTGCGACC---ATGTCGCTTTCTCCCACTA
AACAT------AAATTGATCGCATTGTCCCTCCTAAGTAAATACGTGAAACCCAAACGCCACCTGCTCATCTTATTTCAA
CCGTGGCGGAGTTGTGTTAATCATGCAGAAAACAAGAACTTCGCATAAGATTACCCAAGTAAACATCCAATGTGGGATGG
AAATGGTAATCACCAAACAAGAATGACGAAAAGTAGTATTTTGCAAAACATGTAAGCTCAAGAAAATACCATGAGTGATG
AAGGCTTGCACAAATCATCCATGCTTAGCAATACCCATTCTGATGCCTATCAACACCCTTTTCCGCGAAAAGCAAACTAC
AACATTGTCTTGTCCATCAGCTCATCTGGAAGATGCCAAGCCTGGTCCAGGCATGACATCAGCAAAATTAAGTACGAAAA
CTGCATAGGTGAGAGTTTATGGAAAACTAACAACGTTCAATGTTTCAGTTAGTGAAGTATGT------------------
-----------------CACCAACTATCATGTAAGAATGTCTGCAAATGATTAGCAGCAACGCATGACAAACATCTGACC
TCTGAAGTCTGAAACATAGCTGATGGAAGTTCAGAGATCTACCATTCTGATACACTCTGGGCTTATAATCCAGGAATGAC
GCTCACTACCAATCATACAGCCTCCCGATTGTTAAAGAAACCGATGAACAGTATGTAA-----------------TATCG
ATACCACGAAGAAAGCGAGCACATCCAATTTTGTGTTCGATCTGAATTTACCTTACGTAGTAGGTAAAACAGAGATGGCC
TTACCTAAAG----CTTGAAAATGCTAATAATTTTGAGCATCGAAATGTA------------------------------
------------------------------AGAACATAT-TTAGAACTAACCAAGATTTAGTCTCAGAGGTGGTCGCCAC
TGTGGGGGGAGCCGGAGGTAGGCGGAAGACGGCGGGGCTGGTAG------GGAAGGTGCCGCGCGAGCAGGGTTGCGTTG
GCGAAATAGCCGCGTCGCGCCGTTCCTGTTGCAGCAGCAGCCAGCAGGCGGGGGCGCAGA----------CGGCGAGCAC
TGCAACTCCGGCAATGTCG---GC--GCGAGGTT---ACAAATGCGAGGAAGCAGGTAGGCAGAAAAAGCCCAAGTTTCC
-ACGAGGCCTGCTTGACGGGGCCGAGATGAATAAATG---TCCTGAGAGCCCACGTGGGAGGCGGCCCGGCCCATCTAAG
AGGGTGCTC------------CCGTCCGTCCGTCCTTCCTCAAAACCCTGGGGATGGAGCTGAGCGGTGCCGCCGCCAAT
TAATCTGCGCCTCCGTCTCCTCCAACTCCGACCACCACCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCAGACCTCTCAGCCTTAGCTTTCC-
--GATGGGTCGCACAGTCAAGAAGGCCGGCAAGTCCAAGTCGAAGAAGGGCAAGGCACGCGATTCCGCAGCGGCTCTTCT
TATTT-CCTTTTTCCCAC--------TGATGATAAGCTCTCCCTAATTTTCGTGTTATCTTGGGCGGCGTTTGTTTGGTT
AGGGAACGAAGAAGGCTGATGCTTCATCGTCTGCTGCCGCTGCGGTGGCTTCTGGTCCGGCAAAGGTGCGGGA-GCACTA
-GTCGTTCGTTTCAATGCTATTTTATTGTTCT----TTGATTGATTGATTGATTGGAGCGTATAGATGCCTGCCGAGACG
----AATTGCTCCTATGATTAAATTGTGTTTTGTACCTGCTTAAGTTGTGCTTTCTTCTGTTCTCATGCTAAGGATGATG
CTGAAAACTGTGTATGTGGAATTACATATGTAAATGGTGGATTTTGTTGTTAGGTGTGGCAACCAGGTGTAGATGCACTG
GAGGAGGGAGAGGAGCTCCAGTTTGATCCCGAGGCTTACAACTATCTCCGAGGATTTAGTATTGGTTGGCCTTGCTTGAG
GTAAAACTATATTCTCCTTATCCACAGGGAGGCATTGTTCGT-----------AGACTACGAAATTATCTGTTCTCAAAG
A--TTCACTTCGCTTTGTAGCTTTGATGTTGTACAAGATCAACTTGGGCTTGTCCGATCAGAGTTCCCACACACATTATA
TGGCGTTGCTGGAACTCAGGTTGCGTTCCGTCTTTACCCTTTTTAAAATTTACACAGAAAGGACTACTTCATGCTTTGTC
TTG-CAGCAAAACTGAGATTACAGTTC--
>chr4A_1
ATGCGTAGAAGTCCCGATCCTCAATCCAGCCCCATGTTGTGCAGAGAGCCAGTGATTATACTTGTACAGTAGTAAAATAA
GGAAGACACTTAGTATGATATACTGAATATGCATCCTTAAT--GTAATACCCTGAACTGTGAGATACTGTGTAAACTTTT
TTCCATACAGAGGACTATTTTACGACCCAGCATCATGTGCCCTTGT-CTGTTGCGACC---ATTTTGCTTTCTCCCACTA
AGCAT------AAATTGATCGTATTGTCCCTCCTAAGTAAATACGTGAAATCCAAACGCCACCTGCTCATCTTATTTTAA
CCGTGGCGCAGTTGTGATAATCATGCAAGAAACAAGAATTTTGCATAAGATTACCCAAGTAAACATCCTATGTGGTATGG
AAATGGTAATCACCAAACAAGAATGAAGAAAAGTAGTGTTCTGCAAAACATTTAAGATGAAGAAAATACCATGAGTGACG
GAGGCCTGCACAAATCATCCATGCTTAGCAC-GCCCATTCTGAT-CCTATCAATGCCCCTTTCCGCGAAAAGGAAACTAC
AACATTGTCTTGTCCATCAGCTCATCTGGAAGATGCCAAGCCTGGTCCAGGCGTGACATCAGCAAAATTAAGTAGGAAAA
CTGCACAGGTAAGAGTTTATGGAAAATTAACAACGTTCAATCTTTCAATTAGTGAAGTATAT------------------
-----------------CACCAACTATCATGTAAGAACCTCTGCAAAGGAGTAACTGG---------CAAACATCTGACC
TCTGAAGTCTGAAACATAGCTCATGGAAGTTGAGAGCTCTATCATTCTGATCCTCTCTGGGCTTATAATCCAGGAATGAC
GCGCACTACCAATCATACAACCTCCCGATTGTTAAAGAAACCGATGAA---------------------------TATCG
ATACCATGAAGAAAGCGAGCACATCCAATTTTGTGTTCGATCTGAATTTGCCTTAAGTAGCAAGTAAAACAGAGACGACC
CTACCTTGAG----CTTCAGAATGCTAATAATTTTGAGCATCGAAATGTATTTCCACCACGCGGATTCACTCAGTGCAGA
GCTTGCATGCCTGGGGGAGAGAGAGAAGCAAGAAAAATCCTCAGAGCTAACCAAGATTTAGTCTCAGAGGTGGTCGCCAC
TGTAGGGTAAGCCGGAGGTAGGCGGAAGATGGCTGGGCTGGTAGTGGTAGGGAAGGTGCCGGGCGAGCAGGGGTGGGTTG
GCGAAATAGC-----CGCGCCGTTCCTGTTGCAGCAGCAG-------GCGGGGGCGCAGATGGGAGATAGCGGCGAGCAC
TGCAACTCCGGCAATGTCGTCGGC--GCGAGGTTACCACAAATGCGAGGAAGAAG--------------CCCATGTTTCT
GACGAGGCTTGCTTGACGGG-CCGCGATAAATAAATATCCTCCTCAGAGCCCACGTGGGAGGCGGCCCGGCCCATCTAAG
AGGGTGCTC------------CCGTCCGTCC----TTCCTCAAAACCCTGGGGATGGAGCTGAGCGGTGCCGCCGCCAAT
TAATCTGCTCCTCCGTCTCCTCCAACTCCGACCACCTCCCCCTCCCCTCTCTCCGGCAGAC-------------------
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--------------------------------------------------------------CTCAGCCTTAGCGTTCTC
CTGATGGGTCGCACAGTCAAGAAGGCCGGCAAGTCCAAGTCGAAGAAGGGCAAGGCACGCGATTCCGCAGCGGCTCATCT
TATCTCCCTTTTTCTCAC--------T-ATGATAAGCTCTCCCTAATTCTCGTGTTTTCTTGGGCGACGTTGGTCTGGTC
AGGGAGCGAAGAAGGCTGATGCTTCATCGTCTGCTACCGCTGCGGTGGCTTCTGGTCCGGCAAAGGTGAGGGGGGCACTA
-ATCTTTCGTTTCAATGCTATTTTATAATTCT----TG--------GATTGGTTCGAGCGTATAGATGACTGCCGTGATT
AGTTAGTTACTCCTATGATTAAATTGT------------------------TTCCTTCTGTTCTCATGCTAAGAATGATG
TGGAAAACTGTATATATGGAATTACATATGTAAATGGTGGATTTTGTTGTTAGGTGTGGCAACCAGGTGTAGATGCACTG
GAGGAGGGAGAGGAGCTCCAGTTTGATCCCGAGGCTTACAACTATCTCCGAGGATTTAGTATTGGCTGGCCTTGCTTGAG
GTAAAACTATATTCTCCTTATCCGCAGGGAGGCATCCTTCGTGCTGTAATTTCAGACTAAGAAATTCTCTCTTCTCAACG
A-TTTCACTTTGCTTTGTAGCCTTGATGTTGTGCAAGATCAACTTGGGCTTGTCCGATCAGAGTTCCCACACACATTATA
TGGCGTTGCTGGAACTCAGGTTGCGTCCCGTCTTCACCCTTG-TAAAATTTGCACAGAAAGGGCTACTTCATGCTTTGTC
TTA-CAGCAAAACTGAGATTGCAGTTCAT
>chr5A_124
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-------------------------------------------GTAATACCTTGAACTGTGAGATATTGTGTAAACTTTT
TCAGATGCAGAGGACTATTTTACTTGCCTGCATCATGTGCAATTGCCCTCTTGCAACCATTATTCCGCTTTCTCCCACTA
AACAT------AAATTAATTTCACTATCTGTCCTAAGTAAATACGTGAAACAAAAACGTCACCTGCTTATCTTCTTTTAA
GCAAGATGGAGTTGTGATAATTATGCAAAAAAGAAAAGTTCA-CATAAGATTACCCAAGTAAATGTCCTATGGGGTATAG
AAAGGGCAATCACCATACAAGAATGACGAAAAGTAGTATTTTGCAAAACATGTAAGCTCAAGAAAATACCATGAGTGAAG
GAGGCATACACAAATCGTCCATGAATAGCAATGCCAATTCTGATGCCTATTAACATCCTTTTCTATGAAAATGAAGCTAC
GACATTTCTTTGTCTTTCAACTCATCT-GAAGTTGCCAAGCCTTACAGCCTTGACATGA---------------------
--------------------GGAAAAATAACAACATTCATTGTTTCAATTAGTAAACTATAAACTATAATGCTAGGAGCC
TAGGAGTTTCTATAAACCACCAACTATCATGTAAGAACGTATGCAAAGGATTAACGACAAGGCATGACAAAACCAT-ACC
TCTGAACTCTCAAACATAGCTCATGGAAGTTGAGGCTTG-ATCTTTTTAGTACACTCTAGGCTCATAATTCGGGGATGAG
ACACGCTACCAACCATATAACTTTCCAATTGTTAAAGAAACCGACGAAGATTGTTGATTGTTGATACCACGGCACTATCG
ATGCCATGAAGAAAGTGAGCACAGTCAATTTTGTGTTCTGTCAGAATTTGCCTTCAGTAGCAAGTTCAATAGAGATGGCC
TTAATTACCTTCAACTTGAAAATGCTAATAATTTCAAACATCGAAATATATTTCCAC-----------------------
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>SNPs
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-----S-----SS-S-SSS-SSSSS--SSSSSSSSSSS-S-SS-------------------------------------
S-------------------------------------------------------------------------------
-----SSSSSS----S----------------S-----------------------------------------------
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--S-----------------------------------------------------------------------------
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-------------------------------------------------------------S------------------
-------------------------------------------------------------------------S------
------------------------------------------S-----S-S-----------------------------
-----S-S-----------------------------------------------------------------S------
------------------S----------------------------------------S--------------------
-------------------------------------S--------------S---------------------------
---S----------------------------------S--------------------S---------S----------
-S--------------------------------------S--------S------------------------------
-----------------------SSS--------------------------S---------------------------
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---------SSSSSSSSSSSS-----------------------------------------------------------
------------------------------S-------------------------------------------------
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----------------------------------------------------------------------------S---
--------------S---------------------------------------------------------S-------
----------SSS--SSSSSSSSSSS------------S--------S--------------------------------
--------------------------------------------------------------------------S-----
S---S----------------------S----SSSS--------------------------------------SS----
---------------------------S--S----------------------------------------------S--
----------------------------------------S--------------------------S------------
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--S--S-------------------------------------S---------------S--------------------
SS---------------S--------------------------------------------------------------
----------------------------SS--------------------------------------------------
---S-------S-----------S-----
>forward_273
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-------------ATCGATCGCATTGTCCCTCG-----------------------------------------------
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>reverse_1386
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-------------------------GGCGAGGTTACCACAAATGC-----------------------------------
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>forward_1282
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----------------------------------------------------------------GAGCAAGGGTGGGTTG
GA------------------------------------------------------------------------------
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>reverse_2884
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---CCAGCAAACCTGAGATTGCA------
