>input_sequence_83771
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---------------------------------------ATGGTGGCGCCCAAGGGGTGCGTGACGGTGCGCGTGGGGGC
GGAGGGGGAGGAGCAGCGCCGCTTCGCCGTGCCGCTCGACCACCTCAAGCACCCGCTCTTCGGGGCGCTGCTCGACGAGG
CCGAGCGCGAGTACGGCTTCAGGCACCAGGGCGCCATCGCCATCCCCTGCCGGGTCGACCGCTTCGTCCACGTCGAGCGC
CTCATCGACCGCGACCTCGGCGCGCACGGCCACCAGCTCGTCGACCTCGACTGCGGCGCCGCCACCGCCCACGGCCACGG
CCACATACATCTGCCGCGCTTCGTCGGCTGCTTCCGCGCCTGA-------------------------------------
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>chr1B_1_TraesCS1B01G201800
ACAGGCCGCCTCCTCCTCCTCGCAGCCAAGTCAACCCCAAACC--GAGAGAGAGAGAACAAACAGTACACGCGAGAAAAG
A----------------------------CCGAGCCAAGCAAATCGTAACCGC---CGCCAGGCCTGCATCCTCATCTGA
ACCCAGATCGGCCGCCCCTGGCCCCAACCGCAACCGCAGCCGCAGCGGCCACGCG----CA------------CGCCCTG
CCTGACCTGACCTGACCTGACCACCTCACCACCCCTTCCTTCCTTCTCCCCAAAGAAACGACCGCCCCGCCCACGCCCAA
CCGCGCGCGCCCACGCGTGGTCGGTCGCGTCTCCACGGGTCCGGTTCGTCCCTTCGCTCGGGTAACGGAGACGGGACGGG
CACGGGAAGGAAACGGC---CACC---AGGTTACCAACCCCGCACCGCACCGGGGCT-------------CCTGGGCTGC
TATAAAAGGCGGGGCTCCCTCGCCTCCCAACCCCCCCTCTTTCTTCCTCGCCAACAACGACCT----CCTCCA---CATC
AGAAAAAAAAAAAGGAAAGCAGGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTCCTCCCTCACCGT
CTTCCGCCTCGCCATCTCCAGCTCCGACCCCTGGCCCTTCTCTTCCTAACCCCAAACCCCTCCATCCCCCTCTCGAGCTC
CGCCGTCCGATCTCCCTCCCCCCTC-TCCTCCTTCCTCGCAACAGCCACAAGACTCGTCCGGTCCT---CGCCTCCGATG
CACCTCAGGCAGCAGCAGCAGCACCACCAGAGGGCGGATATGGTGGCGCCCAAGGGGTGCGTGACGGTGCGCGTGGGGGC
GGAGGGGGAGGAGCAGCGCCGCTTCGCCGTGCCGCTCGACCACCTCAAGCACCCGCTCTTCGGGGCGCTGCTCGACGAGG
CCGAGCGCGAGTACGGCTTCAGGCACCAGGGCGCCATCGCCATCCCCTGCCGGGTCGACCGCTTCGTCCACGTCGAGCGC
CTCATCGACCGCGACCTCGGCGCGCACGGCCACCAGCTCGTCGACCTCGACTGCGGCGCCGCCACCGCCCACGGCCACGG
CCACATACATCTGCCGCGCTTCGTCGGCTGCTTCCGCGCCTGACGAT---GATGGCGACGCGTCGTCGACCGGCGGATCT
CTTGCTGTTTCTTTGTTAGGGTTGGTT----GAGTAGTTCTCTCCCGTATGCTGCTGGCTAGTTTGTTTCGCCCTCCGGT
CGCG-----------------ATGGGTTTGTTATGCATGGTTGTTCTCCATTGGTTTGGTTTGT----GCTGGGAGAATC
GATCGGAGGACGAATTCGATGTT---GATGACGACGAAAAATTATGATCCAAGTGTAAAGAGATAATA--TTATTGTTAG
TAGCTTATTAATCCTGTACTTTTTTCCTTTTGTCAATTTGATGCTCTCCGCAGAAAAAGTAGA-----------------
AGAATATATTGTTGCTTGTCTACGTGAAACATCT-----------TACTCCTCGGTCTATTGACGGGAAAT---AACGAA
ATTTGCCGATAAATGCATCTGAATAGATTGAAAGCAAGCAAATAATTTGTTGAAAGTAG---TATCTCGCACCAATATAT
ACATGTCAGACGGCACAATTCACAACACAAAATTGATATGCATACGAGGTGGAGAATGATGCGATACCAAGTTTCGACAT
ATATTCCCTTCTCCACCTTGGTGAGCATATCCAAGTAATATTCCGGGGTTCGTTCTTAA---TAATTGAGTAGTTCTTAG
TTATTAGTATTATCCTAGATTAGATCTAGGTGCCAAAATTAGTTAAATGACAAGCAATTCTTGTCACCTCGGAAGGATGA
TTAAAGGCTTCACTAACGTTATTACTACATGAAATATCTTACGCTTAAAAACAAATAATAATATTGCAAAGAGTACCAAA
GACCCCCCCTCTA----TCTTTCTATCTTCTTCCTT--------------------------------------------
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---------------------------------------------------------------------------TGTTT
TTCTTTTCGATA--------------------------------------------------------------------
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------------------AAGGATGAACTTTATTATCTCAAAATGAAGCATCAAATGAATGCAAAC--ATATTGACCATA
CACCCG--GCATCTGCATAACTAAGATGCACAC-----------------------------------------------
----------------------------------------------------------AATCAACACTAATACACACACA
AAAAACTCGCTGGCAAATAGCAAAGCCTACAAGATCAAAGTTATGCCCAAGCGAGGAAAGAGAAAAGAATC
>chr1D_1
ACAGGCCTCCTCCTCCTCCTCGCAGCCAAGTCAACCCCAAACCGAGAGAGAGAGAGAACAAACAGTACACGCGAGAAAAG
AATACGTAACAAACTCTCGAGTCCCAAGACCCAGCCAAGCAAATCGTAACCGC---CGCCAGGCCTGCATCCTCATCTGA
ACCCAGATCGGCCGGCCCTGGCCCCAACCGCAACCGCAGCCGCAGCGGCCACGCGCGCGCA------------TGCCCGG
CCTGACCTGACCTGACCTGACCTGACCACCTCCCCTCCCTTCCTTCTCCCCAAAGAAACGC------------CGCCCAA
CCGCGCGCGCCCACGCGAGGTCGGTCGCGTCTCCACGGGTCCGGCCCGC----TCGCTCGGGTAACGGAGACGGGACGGG
CACGGGAAGGAAACGGAGGACACC---AGGTTACCAACCCCGCACCGCACCTCACCGCAC----------CCGGGGCTGC
TATAAAAAGCGGGGCTCCCTCGCCTCCCAACCTCCCCTC-TTCTTCTTCGCCAACAACGACCTACGACCTCCTCCTCACC
AG-AAAAAAAAGAAGAAAGCAGGCAAGGTGGAGTAG----GAACCATGTCCAACGTGCCCACCTCCCTCCGC--------
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---------------------------------------------------------------GACTCCTCCCTCACCGT
CTTCCGCCTCGCCATCTCCAGCTCCGACCCCTGGCCCTTCTCTTCCTAACCCCAAACCCCTCCTCCCGCCTCTCGAGCTC
TGCCGTCCGATCTCCCTCCCCCGTC-TCCTCCTTCCTCGCAACAGCCAGAAGACTCGTCCGGTCCT---CGCCTCCGATG
CACCTCAGGCAGCAGCAGCAGCAGCACCACAGGGCGGAGATGGTGGCGCCCAAGGGGTGCGTGACGGTGCGCGTGGGGGC
GGAGGGGGAGGAGCAGCGCCGCTTCGCCGTGCCGCTCGACCACCTCAAGCACCCGCTCTTCGGGGCCCTGCTCGATGAGG
CCGAACGCGAGTACGGCTTCAGGCACCAGGGCGCCATCGCCATCCCCTGCCGCGTCGACCGCTTCGTCCACGTCGAGCGC
CTCATCGACCGCGACCTCGGCGCGCACGGCCACCAGCTCGTCGACCTCGACTGCGGCGCCGCCACCGCCCACGGCCACGG
CCACCTCCACCTGCCGCGCTTCGTCGGCTGCTTCCGCGCCTGACGAT---GATGGCGACGCGTCGTCGACCGCTGGATCT
CTTGCTGTTTCTTTGTTAGGGTTGGTT----GAGTAGTTCTCTTCCGTATGCTGCTGGCTAGTTTGTTTCGCCCTCCGGT
CTCGATC----TCCCGTACGTATGGGTTTGTTATGCATGGTTGTTCTCCATTGGTTTGTTTTGT----GCTGGGAGAATC
GATCGGAGGACGAATTCCATGTTGATGATGATGATGAAAAGTTATGATCCAAGTGTAAAGAG--AATA--TAATTGTTAG
TAGCTTATTAATCCTGTCCTTTTTTCCTTTTGTCAATTTTATGCTCTCCGCAGAAGAAGTAGCTGTGGTTGTGCCTTGGG
AGAATATGTTATTGCTTGTCTACGCGATATATCATCAAACATGTATACGCCTCACTCTTTTGACGGGAAACTACAAAGGA
ACTTGTCGATAAATGCATCTGGAGTA---GATAGAAAGCAAATAATTTGTCAAAATTAGTACTATCTCGCACCAACAAAT
ACATGCCAGACGGCACAATTCACAACAC-AAATTGATATGCATACGAGGTGGAGAATGATGCGATACCAAGTTTCGACAT
ATATTCCCTTCTCCACCTTGGTGAGCATATCCAAGTAATATTCTGGGGTTCGTTCTTACTAGTAATTGAGTAGTTCTTAG
TTATTAGTATTATCCTAGATTAGATCTAGGTGCCAAAATTAGTTAAATGATAAGCAATTCTTGTCACCTCGGAAGGACAA
TTAAAGGTTTCACTAATGTTATTACTACATGAAATATCTTGCTTATAAAAACAAATAATAATATTGCAGCAC-TACCAAA
GACACCCCCTCCCCCTCTCTTTCTATCTTTCCACTT--------------------------------------------
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---------------------------------------------------------------------------TGGTT
TTTTTTTATAAAGGGTGAACTTTATTAACTCA------------------------------------------------
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---------------------------------------AAAATAAAGCATCAAATGAATACAAAC--ATATTGAGCATG
CACCTG--GCCTCTACATAACTAAGATGCACCTCAGCCTTGTGGCCTGATGGGGTGCCAGACTTTGTTCATGCGATGATT
GCCAGCGATTTGGCTGGTTGTTCTGGTTAATGGAATAGAGAGTATTCCGGCTAAAAAAAA----CACTAATACACATTAA
AAAAACTCGCTGGCAAATAGCAAAGCCTACAACATCAAAGCTATGCCCAAGCGAGGAAAGAGAAGAGAATC
>chr1A_76
-----------------------------------------------------------------------------AAG
A----------------------------CCGAGCCAGGCAGATCGTAACCGCCAGCGCCAGGCCTGCATCCTCATCCGA
GCCCAGATCGGCCGCCCCTGGCCGCAACCGCAGCCGCAGCCGCAGCGGCCACGCG----CCCGCCCGCCCGCCCGCCCGG
CCTGACCTGACCTGACCTGACCCGACCACCTCCCCTCCCTTCCTTCTCCCCAAAGAAACGC------------CGCCCAG
CCGCGCGCGCCCACGCGAGGCCGGTCGCGTCTCCACGGGTCCGGTTCGTCCCTTCGCTCGGGTAACGGAGACGGGACGGG
CACGGGAAGGAAACGGC---CACCACCAGGTCACCAACCCCGCACCGCCCCGCACAGGGGCTCCTCCCGGCCTGGGCCGC
TATAAAAGGCGGGGCTCCCTCGCCTCCCAACCTCCCCTC-TTCTTCCTCGCCAACAACGACCT----CCTCCTCCGCACC
AGAGAAAAAGAAAGGGAAGCAGGCAAGGTGGAGTAGCTAGGAACCATGTCCAACGTGCCCACCTCCCTCCGC--------
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---------------------------------------------------------------GACTCCTCCCTCACCGT
CTTCCGCCTCGCCATCTCCAGCTCCGACCCCTGGCCCTTCTCTTCCTAACCCAAACCCCGCATC----------------
------CCGATCTCCCTCCCCCCTCCTCCTCCTTCCTCA--------ACAACTCTTCTCCGGTCCTCGCCGCCTCCGATG
CACCTCAGGCAGCAGCAGCAGCAGCAGCACAGGGCGGAGATGGTTGCGCCCAAGGGGTGCGTGACGGTGCGCGTGGGGGC
GGACGGGGAGGAGCAGCGCCGCTTCGCCGTGCCGCTCGACCACCTCAAGCACCCGCTCTTCGGGGCGCTGCTCGACGAGG
CCGAGCGCGAGTACGGCTTCAGGCACCAGGGCGCCATCGCCATCCCCTGCCGCGTCGACCGCTTCGTCCACGTCGAGCGC
CTCATCGACCGCGACCTCGGCGCGCACGGCCACCAGCTCGTCGACCTCGACTGCGGCGCCGCCACCGCCCACGCCCACGG
CCACCTCCACCTGCCGCGCTTCGTCGGCTGCTTCCGCGCGTGACGGTGACGATGGCGACGCGTCGTCGGCCGCTGGATCT
CTTGCTGTTTCTTTGTTAGGGTTGGTTCGTTGAGTAGTTCTCTCCCGTATGCTGCTGGATAGTTTGTTTCGCCCTCCGGT
CTCGATCGATCTCCCGTACGTATGGGTTTGTTATGCATGGTTGTTCTCCATTGGTTTGGTTTGTGCTGGCTGGGAGAATC
GATCGGAGGACGAATTCCATGTTGATGATGATGATGAAAAATTATGATCCAAGTGTAAAGAG--ATAATGTAATTGTTAG
TAGCTTATTAATCCTCTCCTTTTTTCCTTCA-TCAATTTGATGCTCTCCGCAGAAAAAGTGGA-----------------
AGAATATGTGGTTGCTTGTCTACGCGATT--TCATCAAACATCTATACTACTCACTCTTTTGACGGGAAAT---AACGAA
ATTTGCCGATAAATGCATCTGAATAGATTGAAAGCAAGCAAATAATTTGTTGAAAGTAGAACTATCTCGCGCCAATATAT
ACATGTCAGACGGCACAATTCACGACAC-AAATTGATATGCATACGAGGTCGAGAATGATGCGATACCAAGTTTCGACAT
ATATTCCCTTCTCCACCTTGGTGAGCATATCCAAGTAATATTCCGGGGTTCGTTCTTACTACTAATTGAGTAGTTATTAG
TTATTACTATTATCCTAGATTAGATCTTGGTGCCAAAATTAGTTAAATGACAAGCAATTTTTGTAACCTTGGAAGGGTGA
TTAAAGGTTTCACTAAGGTTATTAGTACGTGAAATATCTTACGCTTAAAAACAAATAATAATATTCGAAANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTT
TTCTTTGATAAAGGGCAAACTTTATTAACTCAAACAACCAACACTAATACACATAAAAAAGCTGGCAAATAGCAAAGCCT
ACAAGATCAAAGTTATGCCCAAGCGAGGAAAGAGAAAAGAATCAAAAGTGAAAGCAACAATCAACAAGCACCAGCCATCT
GTGACACCACATGGGCACGACATTCTTCGGCAACAATGTCTTTAGGAAGGGAACAGCTCTCCAACACCGCCATCATCGGA
TCCAATGACCAAAGTCAAGATTCTAGGTTTTCATCCTGAAGAACAAGTCCGAGCATCTTCGAGCAATGTCTTCAACAAGG
TAACGTTTCATTTCCCCTTCTTCGGCGGCACGGCTGGCCGAGTGCCTGGATTTACCATGACAACAACTTGTGACATGATA
TTGCGGAGGAAGTTGCGGGAGCGGGCGAGCAACTACTGGTAGTAAGTGACGCTCTTGGTCATGGCGCTTCAATTTGCTGG
ATCCTGACGTGGATGCTGGCGTCATCGTTGATGCCCCTATAAATGAGAGCCATTTGAGCTCTATTTAGCCCAAGTCCGGG
AAAGGTTGGTGTGTCTACGTCTCTCTACTCCCATTGAATCTTTTGGTCGAACGACAACCATGGGACTCCAGCGTTCGTTG
GCAATAGAATGATGGTGAGGCGTTCTCCATTGGTTTGGTTTGTGCTGGGAGAATCGGTGGGAGGACGAATTCTATGTTGA
TGATGATGAAAAATTATGATCCAAGTGTAAAGAGATAATATAATTGTTAGTAGCTTATTAATCCTCTCCTTTTTTTTTCA
TTTTGTCAATTTGATGCTCTCCGCACAAAAAGTGGAAGAATATATTGTTGCTTGTCTACGCGATTTCATCAAACATCTAT
ACTCCTCAGTCTATGGACGGGAAATAACGAAACTTGCTGATAAATGCATCAGAATAGATTGAGAGCAAATAATTTGTTGA
AAGTAGAACTATCTCGCGCCAATACATACATGTCAGACGGCACAATTCACAACACAAATTGGTATGCATACGAGGTGGAG
AATGATGCGATTCCAAGTTTCGACATATATTCCCTTCTCCACCTTGGTGAGCATATCCATGTAATATTCCGGGGTTCATT
TCTACTAATTGAGTAGTTCTTAGTTATTAGTATTATCCTAGATCAGATCTAGTTGCCAAAATTAGTTAAACGGCAAGCAA
TTCTTGTCATCTTGGAAGGATGATTAAAGGTTTCATTAAGGTTATTACACATGAAATATCTTACGCTTAAAAACAAATAA
TAATATAGCAAGACTATCAAGGGTGAACTTTATTAACTCAAAATGAAGCATCAAATGGATACAAACCAATATTGAGCATA
CATCTGTCGCCTCTACATAATTAAGATGCACAC-----------------------------------------------
----------------------------------------------------------AA----CACTAATACACAT-AA
AAGAACTCGCTGGCAAATAGCAAAGCCTACAAAATCAAAGTTATGCCCAAGCGAGGAAACAGAAAAGAATC
>SNPs
-------S------------------------------------------------------------------------
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------------------------------------------------------------------------------S-
----------------------SSSS----S-----S-----------------------SSSSSSSSSSSSS-------
-----------------S--------------------------------------------------------------
----------------------------------------------------SSS-S-----------------------
--------------------------------S------S--------------------------------S-----S-
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
---------------------------------------------------------------SS--S------------
S-------------------------------------------------------------------------------
-----------------------S-----S--------S-----------------------------------------
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----------------------------------------------------S---------------------------
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----S-S--S--------------------------------------------------------------SS------
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-S------------------------------------------------------------------------------
-----------------S-------------S--S---------------------------SS-------S--------
-----------------S--------------------------------------------------------------
-------S----------------S--S-S---S-------------------SS---S---------------------
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----------------------------S---------------------------------------------------
----------------------------------------------------------S---------------------
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-------S--------S-----------------------------------------------------SSS-------
---S-------SS----------------SSSS-----------------------------------------------
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-------SS-S---------------------------------------------------------------------
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----------------------S------------S------------------------S--------------S----
----S-----S---S-----------------------------------------------------------------
------------------------------------------------------------SSSS------------SSS-
--------------------------------S--------------------------------------
>forward_304
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--------------------------------------------TCTCCCCAAAGAAACGACCG----------------
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>reverse_1433
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------------------------------------------------------------------------GCGGATCT
CTTGCTGTTTCT--------------------------------------------------------------------
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