>input_sequence_83761
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----------------------------------------------------------ATGGCCGGTGGCAGCCTGGAGA
CGGCGTGGGAGCTCGCCGAACTTTTCGTCCTCCGTCCCGTCCTGGCCGTCACCTTCGTCCTGTCATTCATCCTCCTGAGT
ACGACGGCCATCCCTTCACCTTGGCTCGTTCCCCTTTAATTTCGGCTCGTCCGTCTTGGTCAACTGACGAG-CCTCAGGC
TGGTATGTGGCGTGGAGGACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGT
CAAGCCCAAGCCCCCAAACCGCGGTCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGA----------------
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>chr1D_1_TraesCS1D01G172100
AAAATACAATTTACTCTGCAAATTTTTTGTTGGCTATAAATCAAACGTTGGA--TTTTTAGCATGGCAAATACAATG-TT
TTTGCCGGTAAATTAGATTGTCACGAGGATTGGCAATTTATGTCAGCAAGCATGCCAAATCCTTGTCATATTCATTTTTT
TTGCTAGAAATTGTCATTTGCATGCTAAAGAAAATTGCCATCCTCGCCACAACAT-------------------------
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---------------------------------------------------------------------AGTTTGCCCTA
AAAAATGTTCTATTTGCCATGCTTAAAAAAATCATTAGAAAAGGGATGAGATTTTTTTTGAAGCGGGGACATAACGAAAA
TACAACCATGTACAGAGGGAAAAAAACGGATGAGATAACTCTGGATCTAATTTGAACGAGTTAT-TT-TTTATACCATCT
GTGAATGTATTGATAG---GTATAGGATTATGTGTGAATGTGATTTGATCAGCATACAATTTGAATCCTACTCCCTTGGT
CCGAAAATACTTGTCACCAAAATGATAAAAAGGATGTATCTAGAACTAAATATGTCTAGATACATCTTCTTTTATTCATC
TTGATGACAAGTATTTTTGGACGGAGGGTTATTCGTTTACGGTCTACTTCCTCTCTCCCACAAGCAATCTCGTTTGCTTC
TTTTTCTTTTCTTTTTCTGAAACTGGAAACTGATTCCATTAAACATCAAGCACAGCTAAGTCGCTGGCCACAAGGTCACA
TACTCACATATATCATTCGGCACGTCCTCCAACCACAG-GC---------------------------------------
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-----------------------------GGTGGGGATCATTGCCATTAGCTCCAATTGCAGCAAGAGCATGAGCTACAG
AGTTGCAGCTACGAGGAGCGAACGATACAGAAACAGCAATCTCCTTTTGCTTTTTTTTTGAAAAAAAGAAGAAAAAAAG-
----TCTCCTTTGCTTCAACGATTGAGCAACCAGCAATCTTA--GTTTAGGTCCGACATGTCATAGACTCATGGACCTCC
CCTCAACCCTCATCGCACAGAACGAGATTCCTTTCTCCCCCCGAAGGCCGTCGGCGCCATGGCCGGTGGCAGCCTGGAGA
CGGCGTGGGAGCTCGCCGAACTTTTCGTCCTCCGTCCCGTCCTGGCCGTCACCTTCGTCCTGTCATTCATCCTCCTGAGT
ACGACGGCCATCCCTTCACCTTGGCTCGTTCCCCTTTAATTTCGGCTCGTCCGTCTTGGTCAACTGACGAG-CCTCAGGC
TGGTATGTGGCGTGGAGGACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGT
CAAGCCCAAGCCCCCAAACCGCGGTCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGACGGCTCTAACCTCCCC
AAGTCTCCTTTTACTTCTGTTCCCATTTGGATGTGCTGCTGTTGTGTTCTGCGGCAATTAATCTTCACCCACTTTTGCTC
AATTCTAGCCAAGATTTCTATTCCGCTGTGGGCACAGCTGAGATACTCGTGCTGTGGAATGTAGATTGGGTTGGTGTATT
CATGGATAGCTTTATTTTGATGTTCGCAATTGCTCACGAGATTTTGATTATCATTGCAGTTTTCCTTTTATCGAAACTGA
TCTGTGAAATGTTAGTTTAAGCTATCTATTGCCTACCCGTGGCCTTGATGTTTGCTGCATTGGTTGCGTCCTTCTCTGCA
ACTACACTGCAGTCTTTTAGTTTGATCTTGGTGCAGTGGTAGAACTGTTAAATGCTTTGGAGAATTTGTGAACGGTAGAA
TGGTGAAACACTCGTGTTTAAATTCAAAGGAAACTTGTTGAGTAAATCAGACAACCATATGTTAAGATTAGCCGCTGGCT
GTTTCGGAGCTGCATTAGAGGGATTAGAGTACGATTCTAATCACTCCTAAGAAGCAGAACTATTTAACGGCTGGCACTGC
AAATACCTGCAGCCGTATTGTTTCAAAACTTTTTATCCCTTCTACCAAATTTGTGGGAAATATGGTTGGAGAGCAATGAG
--------------TATTAAGTTTCATGCATCAACCAGTAGAACCAAAAGTCCAAACTGACGCAGAAGGTTGGGCAAGTC
CACGTATACTTCAACAGAAGAAAATATCTGTAAAGCCTGTTTTGTTCATAGAGAGTTCAGATTAAAAGTGCCTATGAAAT
TTTCTATATTTTATCACTATTAATTGAAAATTGAACATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTAGAGA
GTAATTATTTGAAAAGAGGAAAGATATTTGTAAAGTATTATGATGTGTATATTCTAGCATCTGAGTTATGTTTTGTTGTC
TCCGT-AGAGTCTTCTTATTTTACTTTCACGCGTAGACC
>chr1A_2
-AAATACAATTTACTCTGCAATTTTTTTGTTGGCTATAAATTGAATGTCAGATTTTTTTAGCATGGCAAATACAATG-TT
TTTTACGGCAAATTATACTGTCACGAGGA-TGGCAATTTATTTTAACAAGCATGCCAAATCCTTGTCATTATTCTTTTTT
TTGCTAGCATTCGTCATTTGCTTGCTAAAGAAAATTTTCATCCTCGCGACAACAT-------------------------
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---------------------------------------------------------------------AGTTTGCCCTA
AAAAATGTTCTATTTGCCATGCTTAAAAAATTCAATAGAAAAT-------------------------------------
---------------------------GGATGAGATAACTTTGAATCTAATTTGAACGAGGGTTATT-TTTATCCAATAT
GTGAATGTATTGATAG---GTATAGGATTGGGTGTGAATGTGATTTGATCAGCACACATTT-GAACCC------------
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-----------------------------TATTTGTTAATAGTCTACATCCCCTCTCCCGCAAGCAATCTCCTTTGCTTC
TTTTTCTTTTCCTTTTTAGAAACTGGAAACTGATTCCATTAAACATCAAGCACACCTAAGTCGCTGGCCACAAGGTCACA
TAC--------ATCACCCAACACATCCTCCAACCATAGGGC---------------------------------------
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-----------------------------GGTGGGGATTATTGCCAT---------------------------------
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>chr1B_2
-AAATACAATTTCTTTCCAAAAAAATTTGTTGGCTATAAATTGAACGTCAGATTTTTTTAGCATAGCAAATACAATGTTT
TTTTACGGCAAATTATATTGTCACGAGGA-TGGCAATTTT----AGCAAGCATGCCAAATCCTTGTCATATTCAATTTTT
TCCTAGGAATTATCA--TTGCATGCTAAAAAAAATTGCCATCCTCGCCAGGGACGAAGCTAGAAAAAAAAGTTCAATGGG
GTCAATGTCTATGACAGTGGGGTCATCTTCTATTAATGAATAGTGATTAGTACTTAGTTTCTGAAGGCTTTGCTGATTTC
ATTGGGGTCAATTGACCCCAATCCTTACAAGGCAGATCAGGGATCCGTCCTTGATCCTCGTGACAGCAAAGTTTGCCCTA
AAAAACGTTATATTTGACATGCTTAAAAAATCATTAG-------------------------------------------
----------------------AAAACGGATGAGATAACTCTGAATCTAATTTGAACGAGGGTTATTTTTTATCCAATCT
ATGAATGTATTGACAGGTAGTATATGATTAGGTGTGGATGTGATTTGATCAGCACACAATTTGAATCC------------
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-----------------------------TATTCGTTTACGGTCTACATACCCTCTCCCGCAAGCAATCTCCTTTGCTTC
TTTCTCTTTTCTTTTTTTGAAACTGGAAAGTGATTCCATTAAACATCAAGCACAGCTAAGTCGCTGGCCACAAGGTCACA
TAGTACAGCACAGGCGGTGGGGATCAGTGGCGTAGCTAGGGGGTGGCCAGGGTGGTCCGTGGACCACCCTGGAATTTCCC
CATAACTTGTATATAGTGTAGTAAAGAAATATTTCTTTGAAACTAAATAAATATATTTAAATATTTTCATCAATTGACCA
CCCTGGAGTATTGGTCTGGCTACGCCACTGGTGGGGATCATTGCCATTAGCTCCAATTGCAGCAAAAGCATGAGCTACAG
AGTTACAGCTACGAGGAGCGAACGATACATAAGCAGCAATCTCCTTTTGCTTTCTTTTTGGAAAAAAAAAGAAAAAAAAG
AAGTTCTCCTTTGCTTCAACGATTGAGCAACCAGCAATCTCTTGGTTTAGGGCCGACATGTCATAGACTCATGGGCCTCC
CCTCAACCCTCGTCGCACAGAACGAGATTCCTTTCCCCCCACGAAGGCCGGCGGCGCCATGGCCGGTGGCAGCCTGGAGA
CGGCGTGGGAGCTCGCCGAACTTTTCGTCCTCCGCCCCGTCCTGGCCGTCACCTTCGTCATATCATTCATCCTGCTGAGT
ACGCCGGCCATCCCTTCACCTTGGCTCGTTCCCTTTTAATTTCGGCTCGTTCGTGTTGGTCAACTGACGAGCCCTCAGGC
TGGTATGTGGCGTGGAGGACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGT
CAAGCCCAAGCCCCCCAACCGCGGGCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGAAGGCTCTAACCTCCCC
AAGTCTCCTTTTACCTCTGTTCCCATTTGGATGTGCTGCTGTTGAGTTCTGCAGCAATTCACCTTCACCCACTTTTGCTC
AATTCTACTCA-------------------------------------GTGCTGTCGAATGTAGATTGGGTTGGTGTATT
GATGGATAGCTTTATTTTGATGTTCGCAGTTGCTCACGAGAATTTGATTATCATTGCAGTTTTCCTTTTATCGAAACTGA
TCTGTGAAATATTAGTTTAAGCTATCTATTGCCTACCCGTGGCCTTGATGTTTGCTGCATTGGTTGCGTCCTTCCCTGCA
ACTACACTGCAGTCTTTTAGTTTGATCTTGGTGCAGTGGTAGAACTGTTAAATGCTTTGGAGAATTTGGGAACGGTAGAA
TGGTGAAACACTCGTGTTTAAATTCAAAGGAAACTTGTTGAGTAAATCAGACAACCATATGTTAAGATTAGCCGCTGGCT
GTTTTGGAGCTGCATTAGAGGGATTAGAGTAGGATTCTAGTCACTCCTAAGAAGCAGAACTATTTAACGGCTGGCACTGC
AAATACCTGCAGCCGTATTGTTTCAAAACTTTTTATCCTTTCTATAAAATTTGTGGGAAATATGGTTGGAGAGCAATGAG
--------------TATTAAGTTTCATGCACCAACCAGTAGAACCACAAGTCCAAACTGACGCAGAAGGTTGGGCAAGTC
CACGTATACTTCAACAGAAGAAAATATCTGTAAAGCCTGTTTTGTTCATAGAGAGTTCAGATTAAAAGTGCCTATGAAAT
TTTCTATATTTTATCACTATTAATTGAAAATTGAACATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTAGAGA
GTAAGTATTTGAAAAGAGGAAAGATATTTGTGAAGTATTATGATGTGTATATTCTAGCATTTGAGTGATGTTTTGTTGTC
TCCGT-AGAGTCTTCTTGTTTTACTTTCACGCGTAGACC
>chr1A_758
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------------------------------------------------AGCTCCAATCGCGGCAAGAGCATGAGCTACAG
AGTTACAGCTACGAGGAGCGAACGATACAGAAACAGCAATCTCCTTTTGCTTTTCTTTTTGGAAAAACA------AAAG-
----TCTCCTTTGCTTCAACGATTGAGCAGCCAGCAATCTCTTGGTTTAGGGCCGACATGTCATAGACTCATGGGCCTCC
CCTCAACCCTCGTCGCACAGAACGAGATTCCTTCCTCCCCCCGAAGGCCGGCAGCGCCATGGCCGGTGGCAGCCTGGAGA
CGGCGTGGGAGCTCGCCCAACTTTTCGTCCTCCGCCCCGTCCTGGCCGTCACCTTCGTGCTATCATTCATCCTCCTGAGT
ACGGCGGCCGTCCCTTCACCTTGGCTCGTTCCCTTTTAATTTCGGCCCGTTCGTCTTGGTCAACTGACGAGCC-TCAGGT
TGGTATGTGGCGTGGAGGACGGTGCTGGTGCACGTCCCGCTCGTGCAGGAGATCGCCGGGCTGCGCCGGAAGAAGCCCGT
CAAGCCCAAGCCCCCCAACCGCGGGCGCATCGCCAGGTTCTACGAGTCGCAAGCCCAGAGGTGAAGGCTCTAACCTCCCC
AAGTCTCCTTTTACTTCTGTTCTCATTTGGATGTGCTGCTGTTGGGGTCTGCGGCAATTCACCTTCACCCACTTTTGCTC
AATTCTACTCA-------------------------------------GTGCTGTCGAATGTAGATTGGGTTGGTGTATT
GATGGATAGCTTTATTTTGATGTTCGCAATTGCTCACGAGAATTTGATTATCATTGCAGTTTTCCTTTTATCGAAACTGA
TCTGTAAAATATTAGTTTAAGCTATCTATTGCCTACCCGTGGCCTTGATGTTTGCTGCATTGGTTGCGTCCTCCTCTGCA
ACTACACTGCAGTCTTTTAGTTTGATCTTGGTGCAGTGGTAGAACTGTTAAATGCTTTGGAGAATTTGTGAACGGTAGAA
TGGTGAAACACTCGTGTTTAAATTCAAAGGAAACTTGTTGAGTAAATCAGACAACCATATGTTAAGATTAGCCGCTGGCT
GTTTCGGAGCTGCATTAGAGGGATTAGAGTACGATTCTAATCACTCCTAAGAAGCAGAACTATTTAACGGCTGGCACTGC
AAATACCTGCAGCTGTATTGTTTCAAAACTTTTTATCCCTTCTACAAAATTTGTGGGAAATATGGTTGGAGAGCAATTAG
--------------TATTAAGTTTCATGCATCAACCAGTAGAACCAAAAGTCCAAACTGACGCAGAAGGTTGGGCAAGTC
AACGTATACTTCAACAGAAGAAAATATCTGTAAAGCCTGTTTTGTTCATAGAGAGTTCAGATTAAAAGTGCCTATGAAAT
TTTCTATATTTTATCACTATTAATTGAAAATTGAGCATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTAAAGA
GTAAGTATTTGAAAAGAGGAAAGATATTTGTAAAGTATTATGATGTGTATATTCTAGCATCTGAGTTATGTTTTGTTGTC
TCCGTAAGAGTCTTCTTGTTTTACTTTCACGCGTAGACC
>chr1B_1813
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-----------------------------------------------------------------------CCGCTGACT
GTTTCGGAGCTGCACTTGAGGGATTAAAGAACACCTCTAGTCACTCCTAATAAGTTGAACCATTTCACGGCTGGCACTGC
AAATACCTGCACCCATATTGTTTCAAAACTTTTTATTCCTTCTACAAAATGTGTGGGAAATATGGTTG-AGAGCACTGAG
TTGATGATTGAAGATATTAAGTTTCATGCGCCAATCAGTAGAACCAAAAGTCCAAACTGACGCAGAGGGTTGAGCAAATA
CACGTATACTTCAACAGAAGAAC------GTAAAGCCTGTTTTGTTCATAGAGAGTTAAGATAAAAGTGCCG-ATGAAAT
TTTCTATATTTTATCACTATTAATTGAAAATTGAACATGATAAATGTGATTGTCAATTCGGGCATTTTTATCCGTGGAGA
GTAAGTATTTGAAAAGAGGAAAGATATTTGTAAACTATTGTGATGTGTATATTCTAGCATCTGAGTTAGGTTTTGTTGTC
TCCGT-AGAGTCTTCTTGTTTTACATTCACGCGTAGACC
>SNPs
S----------------------------------------SS-----SS------------------------------
---SS---S------S-------------S-----------S-S------------------------------------
---------S-S--------------------------------------------------------------------
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------------------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------------------S----------------SSS----------S-S----
------------------------------S-----------------------S-------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S---S-------S-----------S--------
----------------S---------------------------------------------------------------
----SSSSS-S----SS------S--------------------------------------------------------
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----S-------------------------------------------------------S------S------------
----------------------------------------SS---------S----------------------S-----
-----------S--------------------------------------S-----------------------------
----------------------------------S--------------------------S------------------
---S-----------------------------S----------------S-----------------------------
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---------------S--------S---------------------------------------S---------------
--------------------------------------------S--------------S-S------------------
-------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------------------------
S----------------------------------------S--------------------------------------
----------S---------------------------------------------------------------------
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---------------------------------------------S----------------------------------
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----S---------------------------------------------------------------------------
-----------------S---------------------
>forward_645
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-----------------------------------------------------------------TCCTACTCCCTTGGT
CCGAA---------------------------------------------------------------------------
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>reverse_1790
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-----------------------------GGGCACAGCTGAGATACTCG-------------------------------
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