>input_sequence_83740
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---------------------------------------------------------------------------ATGCC
GGCGTCGCCGCCCTCCC---GGTCCCCGGAGATCACCAGCGTTTGCTCTGACTCCGACT------CCGAGGAGCCGTCGC
CTGTGATCACCAACAGCGGCGGCGGCGGCGGGTTCGTGGTGCAGCTGGTGTCGAGGGACGTCTTGGACGGGCTCCTGGGC
AAGTTCGCGGACACCAGCGAGTTCGACTTCGACTACGGGAGGAGCGGGCTCTGGTCGCCGCTGGTGCTGCGGCCTGAGGT
CCTGCTCCTCGCCCAGGCGTCGGCGTCG---TCGGCCCGGCGCCGGCAGCGGCGGTGGCGGTGGCGGAAGCGGAGGAAGG
TGAGCACCGGTTGA------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G354500
TGCTCCCCACGCCGATTCCTCTTTACTCCATCGAGCGTTGACAGATGGGATTATCCGCTGAAAAGGGCGCACAGAGATTA
GCCGGAAGCTCTCTCTTGGCCGTGGCCGTGAGGTGAGGCGTGATCCCCACCCAAACTGATTAGATCTTGGATCTAATCAG
CCCCACCATGGATGGACCCGATCAATCCTCAAGGACCAACCTGCCCGGATCGATCCGTTTCGGAAAGGTCGCCCGTCTAA
TGGTAGGTGGCTCACGACGGTGTCCCAGCGTTGCCTGCCTGCCTGCGGCTGGTAGCATCCCCTTCCCCCACGTTCCAT--
----ACGGAAAAGCTCGGCTTCATTGCTACTGCTCTGTATATCTC-GGCGAACGAACCCGCGGCCGGCCGGGGTGCCGGA
TCAAGATCCGTTCTAATAAACCCGCCCATAATTGCGGCGAATTATGCAGCAATCGGGTATGGGGTTGCCAATAAAGACCA
AGCAGTGGT---ACTGCGCCCGCCCAGAGAGGTACGTACGAGCACGATCTTTTGCTGCTCGAGTTAACATGGCATGTTGC
C-----------ACGGAACCTTCTCTGCGTCGCAGCATCGTCC-TGGTGCATGAGATGGATGCGAGGCCTATGTTATGTT
ACGTGGAGGCATCGCCACATGACGGAGAGGTGCGCGGTCGGTTGCCAGAG--------AGAGACGAGAGAGAGATCAGCT
GCGCTGTGCTTGT--TGCGAGAGGAGAGGGCCTGCCGCCATTAAAGAAAGGGAGG---AGGAGGAGATGGCCTAGTCGTG
GCCCCCCTCGACGCGGCTGTCTCTTGCGGGCGGCCACGATCCCAACAGGGAGCGGGTCCAAACCGAGTCATTTTCTCCCT
CCAACCTCCACAGGATCCGCGGCGAAATTCTTTCTTCTTTCCTGTCCGCGGACAGGGCGATGCTGCAAGTGCAACAGCCC
ACCAGCCGTTCTCCGGCCGCGTATTTCTCCGCTCGATCATCCTATTCCTAGCTGCTGCCCTGCCCGCGCGCGACAATGCC
GGCGTCGCCGCCCTCCC---GGTCCCCGGAGATCACCAGCGTTTGCTCTGACTCCGACT------CCGAGGAGCCGTCGC
CTGTGATCACCAACAGCGGCGGCGGCGGCGGGTTCGTGGTGCAGCTGGTGTCGAGGGACGTCTTGGACGGGCTCCTGGGC
AAGTTCGCGGACACCAGCGAGTTCGACTTCGACTACGGGAGGAGCGGGCTCTGGTCGCCGCTGGTGCTGCGGCCTGAGGT
CCTGCTCCTCGCCCAGGCGTCGGCGTCG---TCGGCCCGGCGCCGGCAGCGGCGGTGGCGGTGGCGGAAGCGGAGGAAGG
TGAGCACCGGTTGACGG-CCAAACCTTGCATTTCGTGCATGTG-----------ATTTGCAATGGGGCAGGCATGGATTT
ACTTGTCTCTTCTTCCGGTGCAGATGCTCTGCCGCTGCTTCTGACGC------------GACGTTCGCTTT-------GG
ATGCTTCGTCCGAGAAGCAACTGTAGTTCCTCCATGGTTTGCTCTGCAGACCGCTGTACATCCGCATGTAGCATACGATG
ATGATCGAAGACCAACCAGTAGCAAGAGAGCATGTAAATACGTACGTGGTTACTCTGCACTGTGCACTGCTTTGTGGTTG
GTGATGATCCCGGGAAGCACCCCA---GGTGCGCTGTAATTGCTACAGGATTCTTCTGATGATTGTACTCTTGTGGTTGG
TAATGTTCCACGCGATGTTTGTTCATGTGCTCTACCTATACCTACTGATTTGAGACCAAATCCATGGGCCATGGCCGTGC
CTCG------TTGTACTGGTGGAGGAAAGTAAGGTGGACCTTATTATCGATCATGTGCAGCGCGCAACAAAAGTTTCATC
TTTTTTTTCTTTTGAGACAGAAAAGTTTCATCTTTGAATAGAGCCGAAAGGAATAA-TGCATTGTGGGTATGCCCTAAGC
ATGTTTATTATATATATAGGGAAGGGAGGTGACTGACAGCACATTGACATGATCGTCTCTACAACTAATTAATTCAGCTG
CAAGACAGACAAATTAGATCGTCCTTCATTCCTTGGTGGGTGCTATAA----TATTGAATAAATCTCCTATTAGCCTAAA
GAAGCAGCTAATGCTTTCAAACAACAGCCACCAAGAAATGGAGCACTGGGTTATGCCGACACAGGAGCAGCTTTATAAAA
CACAGTAGGGAAACCTCATTTGATCACGACAGTAAAATCACAGGCTACAGGATCGCCAATTTAGGAGTACACACAACAAG
GTCGAATCGTAAAACAAAGAAGGCACGGGCGCGGCCAACAGAATTTAAAAGGAATAGCTGCTATTACTCCCTCCGTTTCA
TATTACTTGTCACAGAAAT
>chr7D_1
TGCTCCCCACGCCGATTCCTCTTTACTCCATCCAGCGTTGACAGGAGGGATTATCCAGTGAAAAGGGCGCACAAAAATTA
GCTGGAAACTCTCTCTTGGTCGGGCCTGTGAAGT-----GTGATCCCCACCCAAACTGATTAGATCTTGGATCTAATCAG
CCCCACCACGGATGGACCCGATTAATCCTCAAGGACCAACCTGCGCCGATCGATCCGTTTCGGAAAGGTCGCCCGTCTAA
TGGTAGGTGGCCCACGGTGT---------------------------------------------CCCAACGATCTATAC
GGAAACGGAAAAGCTCACCTTCATTGCTACTAC-----ATCTCTCAGACGAACGAACTCTCGGCC-------GTGCCGGA
TCAAGATCCGTTGTGATAAAGCCCCTCATAATTGCGGTGAATTATGCAACAATCTGATATGGGGTTGCGAATAAAGACCA
AGCAGTGGTGGTACTGCGTCCGCCCAGAGAGGTAC----GAGCACGATCTTTTGTTGCTCGAGTTAACATGGCATGTTGT
CACGGAGCTGCGACGGAAGCTTCTCTGCGTCGCAGCATCGTCC-TGGTACT--AGATGGATGCGAGGTCTATGTTATGTT
ACGTGGAGGCACCACCACATGACGGAGAGGTGCACGGTCGGTTGCTACAA--------AGAGA-GACAGAGAGATCAGCT
GCGCTGTGCTTGT--TGCAGGAGAAGAGGGCCTGCCACCATTAAAGAAAGGAAGGA--AGGAGGAGACGGCCTAGTCGTG
GCCCCCCTCGACGCGGC--------------GGCCACGATCGAG-CAGCGCGGGGGTCCAAACCGAGTCGTTTTCTCCCT
CCAACCTCCACAGGATCCGCGGCAAAATTCCTTCTTCTTTCTTGTCTTCGTACAAGGCGATGCTGCGGCCGCAGCAGCCC
ACCAGCCGCTCTCCGGTCGCGTGTTTCTCCGCTCGG---CCCTGCTCCTAGCTGCCGC----CCTGCGCGCGGCAATGCC
GGCGTCGCCGTCTTCTC---GGTCCCCGGAGATCACCAGCGTCTGCTCTGGCTCCGAGTCCGAGCCCGAGGAGCCGTCGC
CTGTGACA------------GGCGGCGGCGGGTTCGTGGTGCAGCTGGTGTCGAGGGAAGTCTCGGACGGGCTCCTCGGC
AAGTTCGCGGACACCAGCGAGTTCGACTTCGACTACGGCAGGAGCGGGCTCTGGTCGCCGCTGGTGCTGCGGCCCGAGGT
CCTGCTCCTCGCGCACTCGTCGGCGTCCTCCTCGGCCCGGCGCCGGCAGCGGCGGTGGCGGTGGCGGAAGCGGAGAAAGG
TGAGCACCGGCTGACGATCGAAACCTTGCATTTTGTAGCACATGTGTGCGAAGAATCTGCACTGGGACAGACATGGATTT
ACTTGTCTCACTTCTGAC-GCAGATGCTCTGCCGCTGCTTCTCATAATCTGATGTGATTGACATTCGCTTT-------GG
ATGCTTCTTCTGAGAAGGAACTGCTCCTCATGG-TGGTCTGCTCTGCAGACTGCTGTACATAC----------------G
ATGATCAAAGACCAACCAGTAGCAAGAGGGCGTGTAA----GTACGTGGTCACAGTACAGCAA-CACTGCTTCGTGGTTG
GTGGTGATCCTGAGAAGCGCCCCAGGTGGTGCGCTGTAATTGCTACAGGATTTTGCTGATGATTCTACTGTTGTGGTTGG
TAATGTTCCATGAGATGTTTGTTCATGTGCTGTATCTACT----------------CAAACCCATGGGCCATGGCCGTGT
TGTGGTTAATTTGTACTGGTAGAGCAAAGTAAAGGTGGACT--TTATCGATCATGTGCAGCGCGCA--------------
------------------AGAAAAGTTTCATCTTTGAATAGAGCCGAAAGGAATATTTGCATGGTGGGTATGTCGTG-GC
GTGTTTATTAT---------GAAGGGAGGTGACTGACAGCACATTGACATGATCATCTCTAGAACTAATTAATTCAGCTG
CAAGACAGACAAAACAGACCGCCTTTCATTCCTGGGTGGGTGCTATAATACGTATTGAATAAATCTCATATTAGC-----
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>chr7B_1
TGCTCCCCACGCCAATTCCTCTTTACTCCATCCAGCGTTGACAGATGGGATTTCCCGCTGAAAAGGGCGCACATAAATTA
GCTGGAAACTCTCTCTTGGTGGTGCCTGTGAAGT-----GTGATCCCCACTCAAACTGATTAGATCTTGGATCTAATCAG
CCCCACCACGGATGGACCCGATTAATCCTCAAGGACCAACCTGCGCCGATCGATCCGTTTCGGAAAGGTCGCCCGTCTAA
TGGTAGGTGGCTCACGGTGT---------------------------------------------CCCAACGATCTAT--
----ACGGAAAAGCTCAGCTTCATTGCTACCAC-----ATCTCTC-GACGAACGAACTCTCGGCC-------GTGCCGGA
TCAAGATCCGTTGTGATAAAGCCGCTCATAATTGCGGTGAATTATGCAGCAATCTGGTATGGGGTTGCCAATAAAGACCA
AGCAGTGGTGGTACTGCGTGCGCCCAGAGAGGTAC----GAGCACGATCTTTTGCTGCTCGAGTTAACATGGCATGTTGT
CACGGAGCTGCGACGGAAGCTTCTCTGAGTCGCAGCATCGTCCCTGGTACT--AGATGGATGCGAGGTCTATGTTATGTT
ACGTGGAGGCACCACCACATGACGGAGAGGTGCACGGTCGGTTGCTACAGAGAGAGACAGAGA-GAGAGAGAGATCAGCT
GCGCTGTGCTGGTGTTGCGAGAGAAGAGGGCCTGCCACCATTAAAGAAAGGAAGGAGGAGGAGGAGACGGCC-AGTCGTG
CCCCCCCTCGACGCGGC--------------GGCCACGATCGAG-CAGCGCGGGGGTCCAAACCGAGTCGTTTTCTCCCT
CCAACCTCCACAGGATCCGCGGCAAAATTCCTTCTTCTTTCTTGTCTTCGTACAAGGCGATGCTGCGGCCGCAGCAGCCC
ACCAGCCGCTCTCCGGTCGCGTGTTTCTCCGCTCGG---TCCTGTTCCTAGCTGGTGCCCTGCCTGCGCGCGGCAATGCC
AGCGTCGCCGTCCTCTCGGTGGTCCCCGGAGATCACCAGCGTCTGCTCTAACTCCGAGTCCGAGCCCGAGGAGCCGTCGC
CTGTGATC------------GGCGGTGGCGGGTTCGTGGTGCAGCTGGTGTCGAGGGACGTCTCGGACGGGCTCCTCGGC
AAGTTCGCGGACACCAGCGAGTTCGACTTCGACTACGGGAGGAGCGGGCTCTGGTCGCCGCTGGTGCTGCGGCCCGAGCT
CCTGCTCCTCGCGCAGTCGTCGGCGTCCTCCTCGGCCCGGCGCCGGCAGCGGCGGTGGCGGTGGCGGAAGCGGAGGAAGG
TGAGCACCGGTTGACGATCGAAACCTTGTATTTTGTAGTACATGTGTGTGAAGAATCTGCACTGGGACAGACATGGATTT
ACTTGTCTCCCTTCTGAC-GCAGATGCTCTGCCGCTGCTTCTCATAATATGATGTGATTGACATTCGCTGTGGAATTCGG
ATGCTTCTTCTGAGAAGGAACTGCTCCTCATGG-TGGTTTGCTCTGCAGACTGCTGTACATAC----------------G
ATGATCAAAGACCAACCAGTAGCAAGAGGGCGTGCAA----GTACGTGGTTACAGTACAGC-A-CACTGCTTCGTGGTTG
GTGATGATCCCGAGAAGCACTCC----GGTGCGCTGTAATTGCTACAGGATTTT-CTCATGATTGTACTGCTGTGGTTGG
TAATGTTCCATGCGATGTTTGTTCATGTG---------------------------------------------------
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>SNPs
--------------------------------S----------------------------------------S-S----
--S----S-----------S----S-S----S--SSSSS-----------------------------------------
--------S-------------S---------------------S-S---------------------------------
----------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S--S----
----------------S--------------S-SSSSS--S------S---------S-S-----SSSSSSS--------
------------S-S-----S----S-----------S----------------S-------------------------
------------------S----------------SSSS----------------------------------------S
------------------S-----------------------------S-SSS--------------S------------
-----------S-S-------------------S-----------S-S---------------S----------------
-----------------------S------------S--------------S---------------S------------
-----------------SSSSSSSSSSSSSS----------SSSS---S-S-S----------------S----------
-----------------------S------S----------S----SS--S---S-----------SSSS---S------
--------S-------S-----S------------SSSS----S--------------------S-------S-------
----------S----S--------------------------S--------------S----------------------
--------SSSSSSSSSSSS-------------------------------------------S------------S---
--------------------------------------------------------------------------S-----
------------S---S----------S----------------------------------------------------
----------------S--S-------------S--SSSSSSS-------------S----S----S---S---------
---------SSS-SSSSSS-----------------------S-SSS---------------S-----------------
-------S--S------S-----SSSS--S-SSS-----------------S---------S-SSSSSSSSSSSSSSSS-
------S---------------------S--S-----SSSS------------SS-S--SSSSS--------S-------
------------S---------------------------------------S-S--------------S----------
----------S--------------------S--S---SSSSSSSSSSSSSSSSSS----S------------------S
SSS-----------------S---S-------S-SS-SS--SS-----------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-------------------------------------S------S---------S-S-SS--
S----------SSSSSSSSS----------------------------------S------S------------------
-------------SS---S--S-S---------S---------------------------------S-------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_704
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--------------------------------------------GTCGGTTGCCAGAGAGAGAC----------------
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>reverse_1811
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--------------------------------------------------TGAGACCAAATCCATGGGCC----------
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