>input_sequence_83729
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-ATGAGGCAGCTGATCCGGCGGCTGTCACGCGTGGGTGACGACTCCTCCTCGCCCCCCGCGTCGC---CGTCGTCGAAGC
GGCGGGGCGGGGGCGGGGGCGGGAGGGCGGT---GGTGCCGGAGGGGCACGTGCCGGTGCACGTCGGGGACGGGAGCGAG
GCGGAGCGGTTCCTGGTGCGGGCGGAGCTGCTGGGGCGGCCGGCGCTGGCGGAGCTTCTCGGCCGCGCGGCGCAGGAGTA
CGGGTACGACCACCAGGGCCCGCTCCGCATCCCCTGCTGCTCCCCCGCCGCCTTCCGCCGCGCGCTCGCCGACGTCGCCG
CCGACTGCTGCTA-----------G-------------------------------------------------------
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>chr4B_1_TraesCS4B01G016500
GCTCCCGGCGCTCGACACGTCCGC----TCCAGACTGGGAAATGGTGACGGGCCCACTCCTCTCCTGCCGGAGTGGCCGT
TGTTGTA-------CCTGGGGTGACAGTGGCACCC------CACATGCGCGCACAGTGCTCGCGTACCGGCAGAGGTAGA
TGGCCGGCCGGGCGGCCATGATGAACTTGTTCGACGGGTTGCGCGGAACGCACGTAGCCCAAGCACCGGAGCGGCGGCGG
CGGCACGCCGACGCTGCCGGGCTCTTTGGCACAGAGCAGAGCATTTCAACGTGCACTCTCCCACGTTTACAATT-AAAGA
TGGAACAGAGAAAATGGGAGACACCGTGAATTCCGCACGCCCGAGCACCTGTCGAGAGACAGGAAAGAGATA--------
------------------------------------TCCTGGCATGGGCATGCCATGGAAGCAGTCCCACTTGAGCCTGT
GCCCTCCACCCGCGGCTAAATTTCGTGTTTTGACCTTTTCGGATATCTATTCGAGATCTGACCCTAGTCTGATAAAATTT
CGAGATCTGATCATTTTGCTACCGCCAAGGTCCATGACAGTAGGGTTGCATGTCCTACCGTAAATTTCTTCTAAGTGTTG
AACACAGTGCGTGCTCGTGCCTACCGCCAAGCACCTTAACGGTAGGGTTGTACAGGCTACCGTCAGTATGTTTGGCGGTA
GGGATATTTTCTACCGCCAAGGACCCTAACGGTAGGCTGTTACACCCTACCGCCATAGACCCTGACGGTAGTAAAAGAGT
TAGATTTCGAAAAGAATTTAAACTAGGGTCAGATCTCGAATAGGTTTCAGAAAAAGGTCAAAACACTAAATTTTGCCTCC
ACCCGCACCCGCCCACGACCCGACCGGACAATCCCCACTGCGATCCGGGGCCCAGACAGACCTG---------------C
CCGGCGCTATAAATAAGCGCGG---------------CGTCTCTGTCCGTGTGTCCAACCCCGCTCGCTGGTCAGCTCCA
CTCACTCGCGCACGCACAGGAGAGCACGACGGC-----------------------------CGACGCTCGAATCGTCGG
GATGAGGCAGCTGATCCGGCGGCTGTCACGCGTGGGTGACGACTCCTCCTCGCCCCCCGCGTCGC---CGTCGTCGAAGC
GGCGGGGCGGGGGCGGGGGCGGGAGGGCGGT---GGTGCCGGAGGGGCACGTGCCGGTGCACGTCGGGGACGGGAGCGAG
GCGGAGCGGTTCCTGGTGCGGGCGGAGCTGCTGGGGCGGCCGGCGCTGGCGGAGCTTCTCGGCCGCGCGGCGCAGGAGTA
CGGGTACGACCACCAGGGCCCGCTCCGCATCCCCTGCTGCTCCCCCGCCGCCTTCCGCCGCGCGCTCGCCGACGTCGCCG
CCGACTGCTGCTAGTAGCTACCGCGCCATG---CAGCTGACC--GGAGACCTCGGC-------CTGAACCCAGCCCAGGC
ACGGCCCG--------------------------------------------CCTGGAAGATGATT-ATTAGCTTTGGGT
TTGGCCTTTTTTTTTTCTTCTTCCTTTTCCG---------TTATTATCGTTCGG-----------TGTAATGTACCACCT
GAAACGACGGGTAGTGTACTACGTAGAGTA-------C-------------------------------CAGTAGTTGTA
CTCTACAGAACTGGAAGG-CTACTGGTTTATGATGAAGCACTCTGTAG--------------------------------
----------------------------------------------------------TTCTTCTCAAAAAAACAAAAAT
CACTCTGCAGTTTCCCTTCAAATTCAGTGTTGCTGTTCTCCCTTCTGTATTACGGGAGTGGTTGTGAATGTTTTTTTTTA
CTAAAAACTAATGGGCATTTTGGGGTGTAGCATGAAGCAGTCGAGACTCGAGAACGC------------AGAGTCTCGTC
AAAAATACAGTAAAAATATGAGAAACACATGGGCAAAATTCGATACAGAGGCTCTTGTGTTTGGATT-------------
-------TGAGTGGCATGCATGGCTCTTGGTTCTTGGGTGTGTGGAG----------------------CAGCGGTTGGC
CCTAGCTAGTG------AGTCCGGTCCAAATA----TCAAAGCGACTCCTCGAGCGGTGAGAGGCAGCGAGGG-------
-CTAGTAGCTA-TCTTTGGGAGGAGCCAACAAC---TGATCTTGGCCGGTGGCTCCGGTCACC----GACGGGTCTTGTC
A-----CTTTGCTTGCGACCGTCGCTAGCGAGCGCGGAAAGTAACCACGACGTCCGAGGCAGCAGCGCATATACAGTTTT
GG------TTGGGTGGGCTGGTTTTTTATTTTC----------GACC---------CGTAGCTTTCGACGAACTGTTTTT
GATCATGGCCGCCTTTCCACTTGTCTGTCTAACCCTAATGCCTAATGGCGCGGCTTAAAGTAGTAAGAGATTACTACCGT
GCACCCAATGCGCTCCCTTCTTTCCATCGTGCATAAGATG------AGATGCACCA--------TCACCATTAGTACGAA
TTTACGACCTCACTCTCACTCTCACGGGATGACGGGAATGGAGGAAGACGAAAGCGACTGCTCG
>chr4D_1
GCTCCCGGCGCTCGACACGCACGCCTGTTCCAGATTGGGAAATGGTGATGGGCCCTCTCCTGTCCTGCCGGAGTGGCCGT
TGTTGTAGAGTATACCTGGGGTGACAGTTGCGCTCGCTCTTCACATGTGCGCACAGTGCTCGCGTACCGGCAGAGGTAGA
TGGCCGGCCGGCCGGCCGGTCCCCGTGA----------TTGCGCGGAACGCACGTAGCCCAAGCAC--------------
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----------------------CGGAGCTGCTGGGGCGGCCGGCGCTGGCGGAGCTCCTCGGCCGCGCCGCGCAGGAGTA
CGGG-ACGACCACCAGGGCCCGCTCCGCATCCCCTGCTGCTCCCCCGCCGCCTTCCGCGGCGCGCTCGCCGAC-------
-----TGCTGCTA-----------GCCACC---CAGCCAACG--GGGGAGCTCGGTCTCAAGTCTGAACCCAGCCCAGGC
-------------------GCACGG-----------------------GCCGGCTGGAAGATGATTAATTAGCTTTGGGT
TTAGCCCTGTTTTCT---------TTCTTTTACGTTGTTATTA---CCGTTCGG-----------TGTAATGTACCACCT
GAAACGACGGGTAGTGTACAG----GAGTG-------CCAGTAGTTGTA------------------------------A
CTTTACAGAATTGGAAGGGCTACTGGTTTATGG---AGCACTCTGAAG--------------------------------
----------------------------------------------------------TT--------------------
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>chr4A_46
-------------------------------------------------GGGCCCTCTCCTCTCCTGCGGGAGTGGCCGT
TGTTGTA-------CCTGGGGTGACAGTGGCACTC------CACATGTGCGCACAGTGCTCGCGTACCCGTAGAGGTAGA
TGGCCGGCCGGCCATGTCT--------------------------------------CCCAAGCACTCG-----------
-GGCACGCCGACGCTGCTGGACAA----------AGCAAAGCATCTGGACGTGCAGTCTCCCACGTTTACAATGAAAAGA
AGCCGCAAAGACAATGGGAGACACCGTGAATTCCGCACGCCTGAGCACCTGTCGAGAGACGCAAAAAGTAATAATCCCCG
ACGATCAACGAAAAGAGGAGATCGTACCGGAGCACGTCCGGGCATGGCCATGGCATGGCAGCAGTCCCACTTGAGCTTGT
GCCCTCCA------------------------------------------------------------------------
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-------CCCGCCCCCGACCCGAGCAGACAAACCCAGCTGCGCGCATCAGCCGACCCGCCCAAACCCAACCTCCCCTTCC
CCGCCGCCATAAATAAGCTAGCCAGCCGCGGCGTCTCCGTCTCCGTGCGTGTGTTCCACTC----CGCTGGTCACCTCCG
CTCACTCTCGCGCGCGCGCAGGGCACTGAAGCAGCAGAGCCAAGTGGAGACGCAGCGGGGAACGACGCTCCGATCATCGG
GATGAGGCAGCTGATCAGGCGGCTGTCACGCGTGGGCGACGACTCCTCCCCTCCCG------CGT---CGTCGTCGAAGC
GGCGGGGAGGGAGCGGGAGCGGGAGCGGGATGCCGGTGCCGGAGGGCCACGTGCCGGTGCACGTCGGGGACGGGAGCGAG
ACGGAGCGGTTCCTGGTGCGGGCGGAGCTGCTGGGCCGGCCGGCGCTGGCGGAGCTCCTCGGCCGCGCCGCGCAGGAGTA
CGGCTACGACCACCAGGGCCCGCTCCGCATCCCCTGCTGCTCCCCCGCCGCCTTCCGCCGCGCGCTCGCCGAC-------
-----TGCTGCTA-----------GCCATCCAGCAGCCAACGGAGGGGAGCTCGGT-------CCGAACCAACCCCAGGC
-------------------GCACGG-----------------------GCCGGCCG---------------GCTTTGGAT
TTGGCCCTGTTTTCTTTT-------------ACGTTGTTATTATTACCGTTCGG-----------TGTAATGTACCACCT
GAAACGACGCGTAGTGTACTACGTAGAGTA-------CCAGTAGTTGTA------------------------------A
CTCTACAGAACTGGAAGG-CTACTGGCTTATGG---AGCGCTCTGTAG--------------------------------
----------------------------------------------------------TT--------------------
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>chr4A_995
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---------------------------------------------------------------------------GTCGG
GATGAGGCAGCTGATCCGTCGGCTGTCACGCGTGGGCGACGACTCCTCGCCGCCCG------CGTCGCCGTCGTCGAAGC
GGCGGGGCGGGGGCGGGGGCGGGAGGGCGGT---GGTGCCGGAGGGGCACGTGCCGGTGCACGTCGGGGACGGGAGCGAG
GCGGAGCGGTTCCTGGTGCGGGCGGAGCTGCTAGGCCGGCCGGCGCTGGCGGAGCTCCTGGGCCGCGCGGCGCAGGAGTA
CGGCTACGACCACCAGGGCCCGCTCCGCATCCCCTGCTGCTCCCCCGCCGCCTTCCGCCGCGCGCTCGCCGAC-------
-----TGCTGCTA-----------GGCA---------------------------C-------CCGAACCCAGCCCAGGC
ACGGCCCGATTTAGTCCTCGCACGG-----------------------GCCGCCTGGAAGATTATTAATTAGCTTTGGGC
CTGGCCTTGTTTTCT---------TTTTCCG---------TTATTATCGTTCGG-----------TGTAATGTACCACCT
GTAAGGACGGGTAGTGTACTAGAGTACTGCCAGTACTCCAGTAGTTGTA----------------------------GTA
CTCTACAGAATTGGAATG-CTACTGGTCTATGATGAGTGTGATGCTTGGAAGAAATATATGTCGTTGCACAATTGGCAAA
GCAATGGCAGTGAGTCTATGCATGGCCGTCTTGCTCTGTTTTTGCAATGGCACTTGGCTTCTGCTCAAACTACGA-----
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--------------GCAGTTTGGGGTCCATCATGCAGCGGTCAAGACTCGACAACGCTCGTAGACTCGTAGTCTCTCATC
AAAATAAAATAAGAAAC--------CATATCGACAAATTTGGATACAGAAACCCTTTTTTTAGGGGAACACTGTCACTGT
GACGCTGTGAGCGGCATG---------------------GTGTTTGG----------------------GAGTCGTTGGC
CCGGTCCACCCCCAC----------------A----TCAAAGCGACTCCTCGAGCGGTGAGAGGCAGCGAGGGAGGCTAG
GACCTAGCTTTGGCTTTGGGAGGAGCCAACAACCGATGATCTTGGCCGGTGGCTCCGGTCACC----GACGGGTCTTGTC
ACTTCGCTTTGCTTGCGACCGTCGCCAGCGAGCGCGGAAAGTAACCACGACGTCCGAGGCAGCAGAGCAAAGCATACAGT
ATCACACTTTGGGTGGGCAGATTTCTTATTTTT----------GATGATGATCCGTCGTCCCTTTCCACGAACTGTTTTT
GATCAGGGCCGCCTTTTCTCTTGTCCGGCTAACCCTAATGGT-------GCAGCTTAAAGTAGTAGTACGATATTGCCAT
GCACCCAATCTGCTCCCTTCTTTCCATCGTGCATAGGATG------AGATGCACCA--------TCACCAT---TACGAA
TTTACGACCTCACTCTC-----------------------------------------------
>chr4D_995
GTCG----------------------------------------------------------------------------
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------------------------------------------------------------------------------GG
GATGAGGCAGCTGATCCGGCGGCTGTCCCGCGTGGGCGACGACTCCTCGCCGCCCG------CGTCGCCATCGTCGAAGC
GGCGGG------------GCGGGAGGGCGGT---GGTGCCGGAGGGGCACGTGCCGGTGCACGTCGGGGACGGCAGCGAG
GCGGAGCGGTTCCTGGTGCGGGCGGAGCTGCTGGGCCGACCGGCGCTGGCGGAGCTCCTCGGCCGCGCCGCGCAGGAGTA
CGGGTACGACCACCAGGGCCCGCTCCGCATCCCCTGCTGCTCCCCCGCCGCCTTCCGCCGCGCGCTCGCCTCCGTCGCCG
CCGACTGCTGCTAATGGTAGCCGCC---------------CG--GGAGAGCTCGGC-------CTGAGCCCAGCCCAGGC
-------------------GCGGCCCTATTTAGCAGTTCTTGCACGTCGCCGCCTGGAAGATTATTAATTAGCTTTGGGC
TTGGCCTTGTTTTATTTTTTCCCG--------------TAGTATTATCGTTCGGTGTACGTACTATGTAATGTACCACCT
GAAGCGACGGGTAGTGTACTAAGAGTACCA-------CCAGTAGTTGTACTCACCCCTCAAAAAAGAAACAGTAGTTGTA
CTCTGCAGAATTGGAAGG-CTACTGGTTTATGATGATGCGCTCTGTAGCATGAAGAAATGGCTACTGGTTTATTA-----
----------------------------TCTTGCTCTGTTTATGCAATGGCACTTGGCTTCTGCTCAAACTACGA-----
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--------------GCATTTTAGGGTGCAGTTTGAAGCAGTCAAGACTCAAGAACGCTCATAGACTCAG----------C
AAAATTAAATAAAAAAA--------CATATCGACACGGAAACAAAAAAAAAATCCAGGGACGTACTGTCA----------
----CTGTGAGTGGCAAG---------------------GTGTGTTTGGGAAATTACTGCAGGCATGCAGAATCGTTGGC
CCTAGCTAGCTACTAGTAGTCCGGTCCATGAAGGGTTCAAAGCGACTCCTCGAGCGGTGAGAGGCGACGAGAGCTAGTAG
CCTAGTAGCTA-GCTTTGGGAGGAGCCAGCAACTGATGATCTTGGCCGGTGGCTCCGGTCACCGACGGACGGGTCTTGTC
ACTTCGCTTTGCTTGCGACCGTCGCTAGCGAGCGCGGAAAGTAACCACGACGTCCGAGGCAGCA-----AAGCATACAGT
ATTACAGTTTGGGTGGCCTGGTTTTTTATTTTCTATTTTTTATGATC---------CGTCCCTTTCCGCGAACTGTTTTT
GATCAGGGCCGCCTTTCCTCTTGCCTGGCTAACCCTAATGGT-------GCAGCTTAAAGTAGTAAGATATTACTACCAT
GCACCCAATCTGCTCCCTTCTTTCCATCGTGGATAAAAGTGAGCCAAGATGCACCATCAGTCCGTCACCAT---TACGAA
TTTACGACCTCACTCTCACGGAG---------CGGGAATGAAGGAGGACGAAAGCGACTGCACG
>SNPs
-------------------SS-------------S-------------S------S------------------------
---------------------------------S-------------S--------------------------------
-----------S-----S-SSSSSSSSSSSSSSSSSSS----------------------------SS-SSSSSSSSSSS
S----------------S--S-SSSSSSSSSSSS----S-----S-SS-------S-----------------S------
S-SSS--S---S-----------------------------S------------------SSS---SSS-SS--------
---------------------------------------S-------S----S-----S-----------------S---
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------S--------S-S-----S---SS-----SS-SSSS---S-SS-SSS-SSS----------------
---S---S----------SS-S---------------------S--S-------S-S--S-SSSS---------S----S
-------S---S---S-SSSS-SSSSS--S-SS-------------------------------------SS--------
------------------------------------S------------S-----SSSSSSS--S---------------
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-------------S-S-SSS---------S-------SS--S-------S------------------------------
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--------S----S--S--SSS-S--------------------------------------------------------
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--------------------------------------------------------------S------SS-SS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------------S--------------S----------------------------SS----S--
----S--S-SS-----SSSSSSSSS--S--S-S----S--S--------SS----------S--S-S-------------
------------------SSSSSSSSSSSSSSSSSSSSS-----SS-----------------------S--SS------
---------SS-----------------SSS-------------------------------------------------
------------S-------------------------------------------------------------------
-----------------------------------------------------------------S---S-SSSSSSSS-
SS-------------------------------------------S-------------SS-----S-------------
-----S------------S--------S------------SSSSSSSSS--S----------------S---------S-
---------SS------------------------------------------------------------SSS------
-------------------SSSSSSSSSSSSS--------S----S---------------S--
>forward_679
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-------------------CCTACCGCCAAGCACCTTAA-----------------------------------------
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>reverse_2605
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--------------------------------------------ATGGCGCGGCTTAAAGTAGT----------------
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