>input_sequence_83717
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----------------------------------------ATGGCTAGCGGCAGTGGCTGGGCCAGCCTCTCCTCCTTCC
TCCCCTGGTCAAGATCCATGGTGAGACAGCTGCTTGCTTTCTTATATTTTGCTGGATCCGTTCTCACGCATGGGATGGCC
ACATTCGACAAA-ATGCATCTTCACTTTCAGGTTCATCCATGGGGTTGTTCTGGCATCGGCCAGGACGCCAGGTTGCGGT
GCGGCACCGATGCCATGTTGTTCGGGGCGATACATGGTGTGGTTCATATCGCGCATG-----------------------
-----------------CAGTTTGGAGCATGGGAACATGCAATGCAAAAATGTTGCGTTTTGTGTATAAAAAATACGAAC
TCATTTGA------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G319300
ATTCTTATTCTTCACACACCCTAAACCACAGCCCCGACCCACGAAACAAAAAGAGCAGGTCAACCCCGGCCCACGACCTC
GACCTCCTTCCTCCACCCACGAACTCTCCCCTCCACCCACTCCCTCCACCTCCTTCCTTCAGCCGGGGCCGCGCCCACCC
CCATCCCGCCCCACCTCCCCCTCGCGGCGCCGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACCCTCCCCCGCGCCGTCGCACCACCTCCCA
CCACCGCGCCGCACCACTATCCTCCCTCGCACTGTCGCACCACCTCCCACCACCGCGCCGCACCACCACCTCCCCCCACG
CCGCCGCCCACCTCCCACCACCGCGCCGCACCGGGAGCTCCCTCCCTCGCGCTGCCCGCCCCGGCCACCACGACGGATCC
GAGCAGCCCCCGCCATCCCGCGCCCAACCGGTGATGGATCCGAGCTCCTCCTCCACATGCCTCCTCCCAACCCCATGCTG
TTCATCTCGATGTATCCCCCAGATCCGGTGAGACCTCGCCCATTCAGGTGGTGCGGCTCCTGGTGGGGATGGGCCAGATC
GAGCCCGGCCATCAACGGTGACCCCTTTCGGCCTAGATACATGGCTAGCGGCAGTGGCTGGGCCAGCCTCTCCTCCTTCC
TCCCCTGGTCAAGATCCATGGTGAGACAGCTGCTTGCTTTCTTATATTTTGCTGGATCCGTTCTCACGCATGGGATGGCC
ACATTCGACAAA-ATGCATCTTCACTTTCAGGTTCATCCATGGGGTTGTTCTGGCATCGGCCAGGACGCCAGGTTGCGGT
GCGGCACCGATGCCATGTTGTTCGGGGCGATACATGGTGTGGTTCATATCGCGCATG-----------------------
-----------------CAGTTTGGAGCATGGGAACATGCAATGCAAAAATGTTGCGTTTTGTGTATAAAAAATACGAAC
TCATTTGAATGCAATTCACGCCTAGACATGTGTTCAGCAAATGCAGTTTGGAGTATCTGCGCATGCAGTGCAGACCG-TG
CTTTTTGTGTTTGAGGA-TTTTATGTATAAAAATTACAGGAACTCGTTTGATTGCAGTATGCGATGAAACATGGTGATGT
TTAGAGTTCAGCATGCAGTTTGGGCCATGTGG--------ACATGCAGTGCAGAATGGTGTTTTTCCGTGTTTGATGATT
TTATTTATGTATAAAAGTTATATGGACTCATTTGAAAATTGTTTACAAAGGAAGTTCATTTT-GAACTGTGTTGCGGCTC
ATTTCCCTT-ACCATGCGGTTCGC------------------CTCGCCAATGTGGAAACCCAAAACTCCAAACAGAAAAA
A-GAAAGAAGGAAATGAAGTGCAAAGATGTGTTAAATGAAAAATGGTAGAGAAACGACAAAAAAAT-TAATGATGTTCAC
TTGACCATTTGATGCAGTGCGGTTTTCTAACTGAAGCAGTGCGGTCGGGTGTCTGATGTTGTTCATCTTATAAGTGACCA
TTTGATGTCCGAAGTGAAAATAAAAATACACAAAATAGCAACTTAAAAAGAAATCATGAAGTTCGCTTGACTTTCTGATG
CAGTGTGGTTTTTCATTCTGAAGCAGTGCGGTCAGCCGTATGACATTGTTCATCCCGTAAGTGCAAAAAAAATTGTTACG
GAAGCGAAAAAAGTAATGCGGTTCACTTCTTGATAGTGTTGTGGTTCATTTACACCCGATGTGAAGTGCACTCTACTTTC
TCGTCCTTGAAAAAATTACGTTTGAATATAAGAAACCATGCAGTTCTCTTACCCGTTTGATGTAGTGCGGTTTTTCGTCT
GATGCAGTGCGGTTTTCAGTCGGATGAAGTACCCACATCGATTAGGGTGTCGCGAAAAACAGAGTGTCCGCATTTCAGTA
AATTCGAAATTCCTCTTAAATCGTAAAGAATTAGAGAGAGTGTTCTACATGAAAAAGTTGCGCCTCGTCGATATCTTTCC
>chr6B_727
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------CCCACCTCCCACCACCACGCCGCACCAGGAGCTACCTCCCCCGCGCCGCCCGCCCCGGCCACCGCGACGGATCC
GAGCAGCCCCCGCCATCCCGCGCCCAACCGATGATGGATCCGAGCTCCTCCTCTACATGCCTCCTCCCAACCCCATGCTG
TTCATCTCGATGTATCCCCCAGATCCGGTGAGTCCTCGCCCATTTAGGTGGTTGGGCTCCTGGTGGGGATGGGCCAGATC
GAGCACGGCCATCAATGGCGACCCCTTCCGGCCTGGATACATGGCTAGCGGCAGTGGCTGGGCGAGCTTCTCCTCCTTCC
TCTACTGGTCAAGATCCATGGTGAGACAACTACTTGCTTTTTTATATTTTGCTGGATCCGTTCTCACGCATGGGACGGCC
ACATTCGACAAGGATGCATCTTCACTTTCAGGTTCATCCATGGGGTTGTTCTGGCGTCGGCCAGGACACCAAGTTGTAGT
GCGGCGCCGCTGCCATGTTATTCGGGGCAATACATGGTGTGGTTCATGTCGTGCATG-----------------------
-----------------CAGTTTGGAGCACAGGAACATGCAGTGCAAAAATGTTGCGTTTGTGTGT--AAAAATACGGAC
TCATTTGAATGCAGTTCACGCCTAGACATGTGTTTAGCAAATACAGTTTGGAGTATCTGCACATGCAGTGCATACCG-TG
ATTTTTGTGTTTGAGGA-TTTTATGTATAAAAATTACAGGAACTCGTTTGATTGAAGTACGCGGTGAAGCATGGTGATGT
TTAGAG--------------------------------------------------------------------------
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>chr5B_754
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---------------------------------GGAGCTACCTCCCCTGCGCCGCCCGCCCCGGCCACCGCGACGGATCC
GAGCAGCCCCCGCCATCCCACACCCAACCGATGATGGATCTGAGCTCCTCCTCCACATGCCTCCTCCCAACCCCATGCTG
TTCATCTCGATGTATCCCCCAGATCCGGTGAGTACTCGCCCATTCAGGTGGTTCGGCTCCTGGTGGGGATGGGCCAGATC
GAGCATGGCCATCAATGGCGACCCCTTCCGGCCTGGATACATGGCTAGCAGCAGTGGCTGGGCAAGCCTCTCCTCCTTCC
TCTACTGGTCAAGATCCATGGTGAGACAGCTACTTGCTTTTTTATATTTTGCTGGATCCGTTCTCATGCATGGGACGGCC
ACATTCGACAAGGATGCATCTTCACTTTCAGGTTCATCCATGGGGTTGTTCTGGCGTCGGCCAGGACACCAGGTTGTAGT
GCGGCGCCGCTGCCATGTTATTCAGGGCAATACATGGTGTGGTTCATGTCGTGCATG-----------------------
-----------------CAGTTTGGAGCACAGGAACATGCAGTGCAAAAATGTTGCGTTTGTGTGT--AAAAATACGGAC
TCATTTGAATGTAGTTCACGCCTAGACATGTGTTCAGCAAATACAGTTTGGAGTATCTGCACATGCAGTGCATACCG-TG
CTTTTTGTGTTTGAGGA-TTTTACGTATAAAAATTACAGGAACTCGTTTGATTGAAGTACGCGATGAAGCATGGTGATGT
TTAGAG--------------------------------------------------------------------------
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>chr6B_763
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------------------------------------------TCCCCCGCGCCGCCCGCCCCGGCCACCGCGACGGATCC
GAGCAGCCCCCGCCATCCCGCGCCCAACCGGTGATGGATCCGAGCTCCTCCTCCACATGCCTCCTCTCAACCCCATGTTG
TTCATCTCGATGTATCCCCCAGATCCGGTGAGTCCTCGCCCATTCAGGTGGTGCGGCTCCTGGTGTGGATGGGCCAGATC
GAGCATGGTCATCAACGGCGACCCCTTCCGGCCTGGATACATGGCTAGCGGAAGTGGCTGGGCGAGCCTCTCCTCCTTCC
TCTCCTGGTCAAGATCCATGGTGAGACAGCTGCTTGCTTTTTTATATTTTGCTGGATCCGTTCTCACGCATGGGACGGCC
ACATTCGACAAGGATGCATCTTTACTTTTAGGTTCATCCATGGGGTTGTTCTGGCGTCGGCCAGGACACCAGGTTGTAGT
GCGGCGCCGCTGCCAT----------------------------------------G-----------------------
-----------------CAGTTTGGAGCACGGGAACATGCAGTGCAAAAATGTTGCA-TTTGTGTATAAAAAATACGGAC
TCATTTGAATGCAGTTCATGCCTAGACATGTGTTCAGCAAATACAGTTTGGAGTATCTGCACATGCAGTGCATACCG-TG
CTTTTTGTGTTTGAGGA-TTTTATGTATAAAAATTACAGGAACTCGTTTGATTGAAGTACGCGATGAAACATGGTGATGT
TTAGAGTTCAGCATGTAGTTTGG--------G--------ACATGCAGTGCGGAATGGTGTTTTTCCGTGTTTGATGAT-
---TTTATGTATAAAAGTTATATGGACTTGTTTGAAAATTGTTTACAAAGGAAGTTCATTTC-GAATTGTGTTGCGGCTC
ATTTCCCTCGACCATGTGGTTCGCCT-TTCGCACGTGCACAACTCGTCAATGTGGAAACCCAAAACTCCAAACCGAAAAA
AAGAAAGAAGGAAATGAAGTGCAAAGATGTGTTAAATGAAAAATGA-AGAGAAACGAC-AAAAA-AGTAATGATGTTCAC
TTGACCATTTGATGCAGTGCGGTTTTCTAACTGAAGCAGTGTGGTGGGGTG--TGATGTTGTTCATCTTATAAGTGACCA
TTTG----------------------------------------------------------------------------
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>chr4B_775
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------------------------------------------------------CCCGCCCCGGCCACCGCGACAGATCC
GAGCAGCCCCCGCCATCCCGCGCCCAACCGATGATGGATCCGAGCTCCTCCTCCACATGCCTCCTCCCAACCCCATGCTG
TTCATCTCGATGTATCCCCCAGATCCAGTGAGTCCTCGCCCATTCAGGTGGTTCGGCTCCTGGTGGGGATGGGCCAGATC
GAGCACGGCCATCAACGGCGACCCCTTCCGGCCTGGATACATGGCTAGTGGCAGTGGCTAGGCGAGCCTCTCCTCCTTCC
TCTACTGGTCAAGAGCCATGGTGAGACAGCTACTTGCTTTTTTATATTTTGCTGGATCCGTTCTCACGCATGGGACGGCC
ACATTCGACAAGGATGCATCTTCACTTTCAGGTTCATCCATGGGGTTGTTCTGGCGCCGGCCAGGACACCAGGTTGTAGT
GCGGCGCCGCTGCCAT----------------------------------------GTTATTCGGGGTAATACATGGTGT
GGTTCATGTCGTGCATGCAGTTTGGAGCACAGGAACATGCAGTGCAAAAATGTTGCGTTTGTGTGT--AAAAATACGGAC
TCATTTGAATGCAGTTCACGCCTAGACATGTGTTCAGCAAATACAGATTGGAGTATTTTA--------TGCATATCG-TG
CTTTTTGTGTTTGAGGA-TTTTATGTATAAAAATTACAGGAACTCGTTTGATTGAAGTACGCGATGAAACATGATGATGT
TTAGAGTTCAGCATGCAGTTTGG--------GCCATGTGGACATGCAATGCAGAATGGTGTTTTTCTGTGTTTCATGAT-
---TTTATGTAGAAAAGTTATATGGACTTGTTTGAAAATTGTTTACAAAGGAAGTTCATTTC-GAATTGTGTTGCGGCTC
ATTTCCCTCGACCATGTGGTTCACCT-TTCGCATGTGCACAACTCGCCAATGTGGAAACCCAAAACTCCAAACAG-AAAA
AAGAAAGAAGGAAATGAAGTGCAAAGATGTGTTAAATGAAAAATGG-AGAGAAATGACAAAAAA-AGTAATGATGTTCAC
TTGACCATTTGATGCAGTGCGGTTTCCTAACTGAAGCAATGTGGTGGGGTG--TGATGTTGTTCATCTTATAAGTGACCA
TTTGATG-------------------------------------------------------------------------
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>chr2B_1347
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---------------------------ATGTTTTCAGAAATTGTTGTTTGAAGTATCTGCACATGCAGTGCATACGC-TG
CTTTT-GTGTTTGTGGATGTTTTTGTATAAAGATTATAGGGACTCATTTGATTGCAGC-------GAAACATGGTGATGT
TCCGACATGAGCACGTAGTTTCGACCATGTGG--------ACATGCAGTGCAACCA----TTTTTTCATGTTTGATGAT-
---TTTATGTATAAAAGTTATATGGACTCGTTTGAAATTGTTGTACCAAAGAAGTTCATTTC-AAATTATGTTGCGGCTC
ATTTCCCTCGACCATGCGGTTCACTTCTTTGCACGTGTACAACTCGCCAATGTGGAAACCCAAAACTCCAAACAG-AAAA
AAGAAAGAAGAAAATGAAGTGCAAAGATGTGTTAAATGAAAAATGGTAGAGAAACGACAAAAAAAAGTAATGCCGTTCAC
TTGACCATTTGATGCAGTGCGGTTTTCTAACTGAAGCAGTGCGGTCAGGTGTCTGATGTTGTTCATCTTGTAAGTGATCA
TTTGATG-------------------------------------------------------------------------
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>chr6D_1347
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---------------------------ATGTGTTCAGAAATTGCAGTTTGCAGTATCTGCACATGCAGTGCAGACGC-TG
CTTTT-GTGTTTGTGGATTCTTTTGTGTAAAGATTATAGGGACTCATTTGATTGCAGC-------GAAACATGGTGATGT
TCAGACATGAGCACGCAGTTTCAACCATGTGG--------ACATGCAGTGCAACCA----TTTTTCCGTGTTTGATGAT-
---TTTATGTATAAAAGTTATATGGACTCGTTTGAAAATTGTTAACCAAAGAAGTTCATTTCATAATTGTGTTGCGGCTC
ATTTCCCTTGACCATGCGGTTCGCTTCATTGCACATGTACAACTCACCAATGTGGAAACCCAAAACTCCAAACAG-AAAA
AAGAAAGAAGGAAATGAAGTGCAAAGATGTGTTAAATGAAAAAAGGTAGAGAAACGACAAAAAA-TGTAATATTGTTCAC
TTGACCATTTGATGCAGTGCGGTTTTCTAACTGAAGCAGTGTGGTCGGGTGTCTGATGTTGTTCATATTGTAAGTGACCA
TTTGAT--------------------------------------------------------------------------
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>chr5A_1347
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---------------------------ATGTGTTCAAAAATTGCAGTTTGGAGTATCTGCACATGCAGTGCAAAATGTTG
CTTTT-GTGTTTGTGAATTTTTTTGTATGAAGATTATAGGGACTCATTTGATTGCAGC-------GAAACATGGTGATGT
TCAGACATGAGCATGCAGTTTCAACCATGTGG--------ACATGCAGTTCAACCA----TTTTTCAGTGTTTGATTAT-
---TTTATGTATAAAATTTATATGGACTCGTTTGAAAATTGTTTACCAAAGAAGTTCATTTC-GAATTGTGTTGCGGGTC
ATTTCCCTTGACCATGCGGTTCGCTTCTTTGCACGTGTACAGCTCGCCAATGTGGAAACCCAAAACTTCAACCAG-AAAG
AAGAAAGAAGGAAATGAAGTGCAAAGATGTGTTAAATGAAAAATGGTAGAGAAACGACAAAAAA-AGTAATGACGTTCAC
TTGACCATTTGATGTAGTGCGGTTTCCTAACTGAAGCAGCGCGGTCGGGTGTCTGATGTTGTTCATCTTGTAAGTGACCA
TTTAATG-------------------------------------------------------------------------
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>chr5A_1347
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---------------------------ATGTGTTCAGAAATTGCTGATTGGAGTATCTGCATATGTAGTGCAGACGC-TG
CTTTT-GTGTTTGTGGATTTTTTTGTATAAAGATTATAGGGACTGATTTGATTGCAGC-------GAAACATGGTGATGT
TCAGACATGAGCACGCAGTTTCAACCATGTGG--------ACATGCAGTGCAACCA----TTTTTCAGTGTTTGATGAT-
---TTTATGTATAAAAGTTATATGGACTCGTTTGAAAGTTGTTTACCAAAGAAGTTCATTTC-TAATTGTGTTGCGGCTC
ATTTCCCTTGACCATGCGGTTCGCTTCTTTGCACGTGTACAGCTCGCCAATGTGGAAACCCAAAACTTCAACCAG-AAAA
AAGAAAGAAGGAAATGAAGTGCAAAGATGTGTTAAATGAAAAGTGGTAGAGAAACAAC-AAAAA-AGTAATGCCGTTCAC
TTGACCATTTGATGCAGTGCGGTTTCCTAACTGAAGCAGTGCGGTCGGGTGTCTGATGTTGTTCATCTTGTAAGTGACCA
TTTAATG-------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----------------S---------S------S------S-----S----------------S----------
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--------------------------------S-----------------------------------------------
----S-------------S--------S------S----------------------------S----------------
--S-------------------------------------S----------------------------------S----
-----------S-------------------------------------------S-----------S--------SS--
-----S---S---------S--------S------------------S---S----------------------------
-----------------------------S-----------S-----------------------------------S--
-------------S----------------------------------------------S-------------------
-----------------------------------------------------------S--------------------
-----------------------S-------------------------------------------------------S
SSS--------------------------S-------------------------------S----S-------------
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-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_675
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---------------ACTATCCTCCCTCGCACTGT---------------------------------------------
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>reverse_2276
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-----------------------------------CATCGATTAGGGTGTCGCGA-------------------------
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