>input_sequence_83662
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-ATGGCTGGGCTGCAGAGGTCTTCACTGACATTCAGGAGGTCAGGATCATCAGGCATGGTCTGGGGCGAGAGGCTCATGT
CGGATGAACATAGCCAGTGGACCTCAGGGGAACCAGAGTTCAGGGAGCTACGGCACTCCCGCAGCGTTGGGTCTGTCGGG
GCGCAGCGCAGGCGCAACGATGGCACCGAGCGAGGCAGCCAGGCGTTCCGGACACGGCGCGTAGCCCCGGCCATGGATCC
ACCGTCGCCCAAGGTTCCTGGCTGCATCTTCTGTGGGATTTTCAGGAAGACAGCACCTTCACAGCCATCTAAGGCCAGAA
GGTACCACTAG---------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G148000
TTGAGACTTTATATTGCTTTTACCATCCTAGTATCATTTTTCTTTGTAGTGCTCCTTTTTCTGTTTCATCCAGCACTAGC
TAGGCAGCATTCCATGGCTTGCAGATATCATATACGTGCCGACCACCTCTGCCAATTCAACCCAGAGTATACAATGCTCT
AGTCAGGTTGATGAATTAGCCCCTGGATCATGCTTAGGTCTGCTGGGCTGCTGGCTGAGTTTTAGTTTTCTTGGTTGCTC
CATGGGCTTGTAATACATGCCTTGACTATTTTCTCTAGTGTTTGGCAAGCAAAACTATCATGGATATGTCTGTTCCAGCA
TATCCTCTGTGATCGGGAGGACTTGATCAGGGCTGGTTAGGGTAGGTACAAATCAAATTGGTTTGATGTGCTGATGATGC
TAGTGGCAAGCAAAACTATCATGGATATGTTTGTTCCAGCTTATCCTGTGTGATCGGGAGGACTTGATCAGGGCTGGTTA
GGGTAGGTACAAATCAAATTGGTTTGATGTGCTGATGATGCCAGTGATGAGCAATAGCAGCATATATTCGCCTTAGAAAA
GAATCTGCAGCAGTACATAACACGTGCCTTGACCTTGAGCTTGAGGGCCATATTCAGAAGTAGAAAA--CAA-GTTGAGG
AGATGCCTGTGACGATCATGTTTTCACTCAAGAAATTACACACATCAGTAGTGTTCAAGT--------------------
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-----------------TTGAAATTCTACCGATGTTTTAAATAATTCAGTCAATTATTTTTGCCTCAATGATTGCTTCAT
GCCAACTCAGTGTACGGCCACGTCTTGTAAGCATCCTAATCCTCACCAGTATCTATATATGTGCCTGTCACCATCGTCTG
ACCCTTATCCAGC-AATTTTGCTGCATTTTCCAACCAGTGGATATGCATGCTATTTAGCTTTGCACATATCCATCACTCT
CCTGCACCCTCAGCCCTCATTGCACATCCATAAAACCCACCTAGAGACAAACCCAGAAGAAGGGCAGGGAAGATTACATC
CATGGCTGGGCTGCAGAGGTCTTCACTGACATTCAGGAGGTCAGGATCATCAGGCATGGTCTGGGGCGAGAGGCTCATGT
CGGATGAACATAGCCAGTGGACCTCAGGGGAACCAGAGTTCAGGGAGCTACGGCACTCCCGCAGCGTTGGGTCTGTCGGG
GCGCAGCGCAGGCGCAACGATGGCACCGAGCGAGGCAGCCAGGCGTTCCGGACACGGCGCGTAGCCCCGGCCATGGATCC
ACCGTCGCCCAAGGTTCCTGGCTGCATCTTCTGTGGGATTTTCAGGAAGACAGCACCTTCACAGCCATCTAAGGCCAGAA
GGTACCACTAGAGTGATCTGTGTATTCATCGACCATA-GTGTGACTGGGTTACCTGGTTCTGGAGCTTGTGAAGTTCAGG
TCCATCGAGTATATACATGCTACTGCCTCCGTTCCATATCAAGTGTCACTGATTTAGTACAACACTTGATTCCTCAGCTG
CCCACCTCTGTGCTTGTATCTGTAGCTGGTATCCCCAGTTTTATTTTCTGCTTTCTAGTTGTAATTTCCTGGCTGGTTGA
TGGCTTTGCTAATTCAAAGCCGGGCTCTGTCTCGAGCCTTTGTTATAAAAAAAAAGTACAACACTTGATATGGAATTGAG
GGAGTAGTACTCAGTGATATGCTCGTATAGTTGCATGCAGTTTGGATAAGTTTGAGCATATCTGTTTATTAAGGTGTTAT
GCATATTTTT-GCTGATTTCTCTACCACTTGATAGTTTG-TGATGCAACTGTTTTCTTGAGTGACCGCCTCGTCTAGCTT
GGGGTACATGATAGAAATTGTGCATCTCTGCTGCAGCACATATCTTGTATAAGTCGCTGTACATGAACATGATGTTTTCA
TTTGGTTCTGTATCTGAATCGTCTAAAGGTGACTATATTTGTAAATGTTGTCCGTGTATTTGTCTTGTTTGGAGGTCACT
ATATCCGTATGGTGCACATCCATGAGCCAATGTATGAATCGACCTACATTTGCGATGT---GAGGTATTTCATGAATTTG
ATTGGTTCTTATTATGTCTCTTAAAATGTTTTCCTCCCTTCCATATGAT------------TTTTCATCTCATAAAATTC
AACTGATTTTTTTTCCTGAACTGTCAGCACTTTTTTTCGGCTGG-CAAGCTCTGTGTTGCTTGGGATGGGATTCTAGGTT
GAGAATTGTTACCAAAGAGAAGTTGTTGAGAATTTGAGTGACATGAACACTGATTACGTAGGTAAAGTGGGTCTAATTGT
TGATTATGAAGGAGGCAAGGCGATGCCTAGACTGCGAGCAGGTTTAGCGGTTCTGGTGGCTTGCCTAAAC
>chr3D_1
TTGAGACTTTATATTGCTTTTACTATCCTAGTATCATTTTTCTTTGTAGCGCTCCTTTTTCTGTTTCATCCAGCACTAGC
TAGGCAGCATTCCATGGCTTGCGGATATCATATATGTGCCGACCACCTCTGCCAATTCAACCCAGAGTATACAATACTCT
AGCCAGTGTGATGAATTAGCCCCTGGATCATGCTT---------------------------------------------
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--------------------GGTTTGATGTGCTGATGATGCTAGTGATGAGCAATAGCAGCATATATTCGCCTCAGAAAA
GAATCTGCAGCAGTACATAACACGTGCCTTGACCTTGAGCTTGAGGGCCATATTCAGAAGAAGAAAA--CAAGGTTGAGG
AGATGCCTTTGACGATCATGTTTTCACTCAATAAATTACACACATCAGTAGTGTTCAAGT--------------------
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-----------------TTGTAATTCTACCGATGTTGTAAATAATTCAGTCAAATAGTTTTGCCTCAATGATTGCTTCAT
GTCAACTCAGTGTGCAGCCACGCCTTGTAAGCATCCTAATCCTCACCAGTATCTATGTATGTGCCTGTCACCATCGTCTG
ACCCTTATCCCAGAAATTTTGCTGCATTTTCCAACCAGTGGATATGCATGCTATTTAGCTTTGCACATATCCATCACTCT
CCTGCACCCTCAGCCCTCATTGCACATCCATAAAACCCACCTAGAGACAAACCCAGAAGAAGGGCAGGGAATATTACATC
CATGGCTGGGCTGCAGAGGTCTTCACTGACATTCAGGAGGTCAGGATCATCAGGCATGGTCTGGGGCGAGAGGCTCATGT
CGGATGAACATAGCCAGTGGACCTCAGGGGAACCAGAGTTCAGGGAGCTACGGCACTCCCGCAGCGTTGGGTCCGTCGGG
GCGCAGCACAGGCGCAACGATGGCACCGAGCGAGGCAGCCAGGCGTTCCGGACACGGCGCGTAGCCCTGGCCATGGATCC
ACCATCGCCCAAGGTTCCTGGCTGCATCTTCTGTGGGATTTTCAGGAAGACAGCACCTTCACAGCCATCTAAGGCCAGAA
GGTACCACTAGAGTGATCTGTGTATTCATCGACCATATGTGTGAGTGGGTTACCTGGTTCTGGAGCTTGTGAAGTTTAGG
TCCATCGAGTATATACATGCTACTCCCTCCGTTCCATATTAAGTGTCACTGATTCAGTACAACACTTGATTCTAAAGCTG
CCCACCTCTGTACTTGTATCTGTGGCTGGTATCCCCAGTTTTATTTTCTGCTTTTTAGTTGTAATTTCCTGGCTGGTTGA
TGGCTTTGTTAATTCAAAGCCGGGCTCTGTCTCGAGCCTTCGTTCTAAAAAGAAGTT-CAACACTTGATATGGAATTGAG
GGAGCAGCACTCAGTGATT-----------TTGTATGCAGTTTGGATAAGTTTGAGCATATCTGTTTATTAAGGTGTTAT
GCATA-TTTT-GCTGATTTCTCTACCACTTGATAGTTTGCTGATGCAACTGTTTTCTTGAGTGACCGCCTCGTCTAGCTT
GGGGTACATGATAGAAATTGTGCATCTCTGCTGCAGCACATATCT-----AAGCCGCTGTGCATGAACATGATGTTTTCA
TTTGGTTCTGTATCTGGATCGTCTAAAGGTGAC--TATTTGTAAATGTTGTCCGTGTATTTGTCTTGTTTGGAGGTCACT
ATATCCGTATGGTGCACATCCATGAGCCAATGTATGAATCGACCTACATTTACGATGTGAGGAGGTATTTCATGAATTTG
ATTGGTTCTTATTATATCTC----ATTTTTTTAATCTTTTCCATATGATCAATTAACTGAATTTTCATCTCATAAAATTC
AACTGATTTTTTTTTCTGAACTGTCTGCACTTTTTTTCGGCTGGGCAAGCGCTGTGCTGCTTAAGATGGGATTCTAGGTT
GAGAATTGTTACCAAAGAGAAGTCGTTGAGAATTTGAGTGATGTGAACACTGATTACGTAGGTAAAGTGGGTCTAATTGT
TGATTATGAAGGAGGCAAGGTGATGCCTAGACTGCGAGTAGGTTTAGCGGTTCTGGTGGTTTGCCTAAAC
>chr3A_1
TTGAGAATTTATATTGCTTTTACTATCCTAGTATCATTTTTCTTTGTAGTGCTCCTTTTTCTGTTTCATCCAGCACTGGC
TAGGCAGCATTCCATGGCTTGCAGATATCATATATGTGCCGATCACCTCTGCCAATTCAACCCAGAGTATACAATGCTCT
AGACAGGTTGATGAATTAGCCCCTGGATCATGGTTAGGTCCACTGTGCTGCTGGCTGAGTTTTAGTTTTCTTGGTTGCTC
CATAGGCTTGTAATACATGCCTTGACTATTTTCTCTAGTGTTTGGCAAGCAAAACTATCATGGAT---------------
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----------------------------GTTTGTTTAAGCTTATTCTGTGTGATCAGGAGGACTTGATCGGGGCTTGTTA
GGGTAGGTACGAATC-AATTGGTTTGATGTGCTGATGATGCTAGCGATGAGCAGTAGCAGCATATATTCGCCTCAGAAAA
GAAGTTGCAGCAGTACATAACACTTGTCTAGACCTTGACCTTGAGGACCATTTTCTGAAGAAGAAAAAACAA-GTTGGGG
AGATGCCTGTGACGGTCATATTTTCACTCAATAAATTACACACATCAGTACTGTCCAAATTTTTGTTGAACAATCACCGG
GGGGTGGGGGGGAGGCCTGCGTTACATCAGAGAGTACAATGAGAGGAGAGGAATAGGTGCCAAGACATGGCGGCGTCCCT
ACTAACAGGGTCTTTGAACCTAAAGATCGAAAGCATGAAATCAGAGATTACATTCTGTAAGGTATCTGCAGCTGAGCGAG
TCGCAGTAGTGTTCTAGTTTAAATTCTACCGATGTTGTAAATAGTTCAGTCAAATATTTTTGCCTCAATGATTGCTTCAT
GCCAACTCAGTGTGCAGCCACGCCTTCCAAGCATCCTAATCCTCACCAGTATCTGTGTATGTGCCTGTCACCATCGTCTG
ACCCTTATCCCAACAA-TTTGCTGCATTTTCCAACCTGTGGATATGCATGCCATTTAGCCTGTGACATATCTATCACTTT
CCTGCCCCCTTAGCCCTCATTGCACATCCATAAAACCCACCTAGATACAAACCCAGAAGAAGGGCAGGGAATATTACATC
CATGGCTGGGCTGCAGAGGTCTTCACGGACATTCAGGAGGTCAGGATCATCAGGCATGGTCTGGGGCGAGAGGCTCATGT
CGGATGAGCATAGCCAGTGGACCTCGGGGGAACCAGAGTTCAGGGAGCTACGGCACTCCCGCAGCGTTGGGTCCGTCGGG
GCGCAGCGCAGGCGCAACGATGGCACCGAGCGTGGCGGCCAGGCGTTCCGGACACGGCGTGTAGCCCCGGCCATGGATCC
AGCGTCGCCCAAGGTTCCTGGCTGCATCTTCTGTGGGATTTTCAGGAAGACAGCACCTTCACAGCCATCTAAGGCCAGAA
GGTACCACTAGAGTGATCTGTGTATTCATCGACCGTATGTGTGACTGGGTTACCTGGTTCTGGAGCTTGTGAAGTTCAGG
TCCATTGAGTATATACATGCTACTCCCTCCGTTCCATATTAAGTGTCACTGATTTAGTACAACACTTGATTCTTCAGCTG
CCCACCTCTGTGCTTGTATCTGTACCTGGTATCCCCAGTTTTATTTTCTGCTCTTTAGTTGTAATTTCCTGGCTGGTTGA
TGGCTTTGTTAATTCAAAGCCGGGCTCTGTCTCAAGCCTTCGTTCTAAAAT---AGTACAACACTTGATATGGAATTGAG
GGAGTAGTACTCAGTGATACGCTCGTATAGTTGCATGCAGTTTGGATAAGTTTGAGCATATCTGTTTATTAAGGTGTTAT
GCATA-TTTTTGCTGATTTCTCTACCACTTGATAGTTTGCTGATGCAACTGCTTTCTTGAGTGACCGCCTCGTCTAGCTT
TGTGCGCATGATAGAAATTGTGCATGTCGGCTGCAGCACATATCTTGTATAAGCCACTGTACATGAACATGATGTTTTCA
TTTGGTTCTGTATCTGGATCGTCTAAAGGTGACTATATTTGTAAATGTTGTCCGTGTATTTGTCTTGTTTGGAGGTCACT
ATATCCGTATGGTGCACATCCATGAGCCAATGTATGAATCGACCTACATTTGCGATGTGAGGAGGTATTCCATGAATTTG
ATTGGTTCTTATTATGTCTCTTGAAATGTTTTTATCTCTTCCATATGATCAATTAACCGAATTTTCATCTCATAAATTTC
AACTGATTTTTTT-CCTGAACTGTCTGCACTTTTTTTCGGCTGGGCAAGCTCTGTGCTGCTTGAGATGGGATTCTAGGTT
GAGAATTGTTACCAAAGAGAGGTCGTTGAGAATTTGAGTGCTGTGAACACTGATTACGTAGGTAAAGTGGGCCTAATTGT
TGATTATGAAGGAGGAAAGGCGATGCATAGACTGCGAGTAGGTTTAGCGGTTCTGGTGGTTTGCCTAAAC
>SNPs
-----------------------S--------------------------------------------------------
----------------------------------S---------------------------------------------
--S-------------------------------------SS---S----------------------------------
---S-------------------------------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-------S----------S-------------S-----S----
----------S----S-------------------------S-------------------------------S------
------------------------------------------------------------S-------------------
-------------------------------S------------------------------------------------
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------------------------------------S----------------S--------------------------
-------------S-S------S---------------------------------S-----------------------
----------SSS-------------------------------------------------------------------
-----------------------------------------------------------------------S--------
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-------------------------------------------------------------------------S------
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------------------------S--------------S--------------------------------S-------
------------------------------------------------------S-------------------------
--------S-------------------------------S---S------S----------------------------
-------------------S------------------------------------------------------------
-----S--------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
----------------S---------------------------------------------------------------
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----------------------S---------SS--S-------------------------------------------
-------------------------S------------------------------S------S----------------
-----------------------S-----------------SS-------------------------------------
--------------------------------------S--------------------S----------
>forward_1192
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----------------------------------------------------CCAGAAGAAGGGCAGGGAAG--------
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>reverse_2519
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--------------------------------------CAGGTTTAGCGGTTCTGGTG------------
