>input_sequence_83646
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------ATGGTCAGGGCGATGGGTATTGCCGCGGCAAAAGGCTTCACCGCCGGTTCCATGCACTTCACGCCCAGCGGCG
TCGTGTGTCTAGCTTTCGCCTTCGTGGCTGCGGTTGCGATCGTGGCCGTCGCCGTGTTCGGCTGCGCCGGCCACAAGAGC
TCCGGCGGGAAGAAGCCTCGACGTGGTCATGGCGGCTCCTACTGGGCAGCTGGAGCGGGCGCAGGCGCAGGCGTCTATGT
TGGAGACAGCGGTGTTAGCACAGGCGGTGGTGGCTGTGGCGGCGGAGGGGGAGGAGGTGGTGGCTGTGGAGGTGGAGGAG
GCGGTGGAGGTTGCTGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>chr2A_1_TraesCS2A01G504800
CCTGCACACCACCGCCGCAGAACCGCCCCGTCCTGGTTTCACGTCAGCGTCCACATGAAGTTTAGCATGGTTTGCCAGAG
GGGCTCTTGGGCGAGTTCTTCTGTGTATGCCCCCGTCTACCCTTGAGATCCGAGCTGGTTTGCTTTCTTTAATACTTTCC
AGCTCTCCAATGAACCTTTTGGTGAAAGAGAGAAGTGATTGAGGTTTGGTGTCAAGTGCTCACTAGCGAGAGGCCGAACT
TGGTGTCGAGTGCCCAGTAGGCCCAATGGCGAGGCCGCCTCGAGGCCCAGCCGTGTTGCATGAATATTTGAGTACGATGT
CGATCCCAAAAAAAAGAGTACAACGTCTTCCTTCCGTCCAAACGAAGCAACTGGATAAAGTCAGAGGCAACGGCGTGCAT
ATACGCCCTGTCTAGAACAAATTTCCACGAACCTATCCTACCATGCATGTCGGTACGAAATTACCAGAAAGAAGAAATGT
TTGAAACTGAACGAGATGTTCCACGAGATTGACGGTGGTGTTCTTTCAAAAAAGATTGACGGTGGTGGGTGCTGACATGA
CGTTTCAACTCCGAGGCCCTCGCCCAGACGCGTCGGACGACTTGACGAGAATTCACGATCAGCGCCAATTAGCTTGGCAC
ACGCGTCCAAGGAAAGTTCCAATTTCAAAGATGCGCAACGTCGTCTATACTCGGCCGATACACAACACGATGGATAGTAT
TG-------TACTAGTAGTAATTGAACAAGTCAGCTGCCATTTCTATGGGCACCTCCTTTAATTAAGTACTCCCCGTCGT
CGCCAAC---------------------CCCAACGACAGACAATCAAGATGAGAATCACGATGGAACTACTACGTTGACA
ACACACGGTAGCAG----TGGAGTGCAGGACAGAGCAACCGCGTAAGACCGCTGACATTTTCTCCGGGCAAAGACTTTAA
GTACTGGTCGACCGGCATTCC-------ACAAACAAC--TGATCAAGAGGAGAAGCTCTCGATCGAGCAGCG------GC
AGCAAAGATGGTCAGGGCGATGGGTATTGCCGCGGCAAAAGGCTTCACCGCCGGTTCCATGCACTTCACGCCCAGCGGCG
TCGTGTGTCTAGCTTTCGCCTTCGTGGCTGCGGTTGCGATCGTGGCCGTCGCCGTGTTCGGCTGCGCCGGCCACAAGAGC
TCCGGCGGGAAGAAGCCTCGACGTGGTCATGGCGGCTCCTACTGGGCAGCTGGAGCGGGCGCAGGCGCAGGCGTCTATGT
TGGAGACAGCGGTGTTAGCACAGGCGGTGGTGGCTGTGGCGGCGGAGGGGGAGGAGGTGGTGGCTGTGGAGGTGGAGGAG
GCGGTGGAGGTTGCTGAGGAAAGAAATCAC--ACAGTGGATTATTACTGCAAGACC-ATGATATTGTTTC----GATAAA
TTTCACTTTATTCAAATATTTGTAAATAATACTTTCACTTTG---GATGATGTAAATGCACGCTCGCTTGTTCACATATT
C--ACATTCATTCATATATGATCTATAATATCATTGTTGGGGCCAGGGATATTTCATAGGGTGTGCCACCTCCATATTTT
TTTAGATTTTGTTTTTTGTTTTTTACACTCCCTCCGTTTCATAATATAGTGTGTATAGATTTTTTGAAAAATCAAATTTT
ATAAACTTTGACCAAATTTATAGAGAATATTATTTATATCTACAATACCAAATATGAACTATGCATCTAGCCCATACATG
TCTGTTGGATGCAAAATCAGCCGGTTTGGTAGGCTAGGCTCCATGCAAATACTAGCCCGCACGAACCCCAAAGCAGTCTC
GGACCAGGCTGAGTGGGAACTCCCGAATCAGCCGTTTTCCCCGAGCCAGGCCCAGGTGAGCCACGCGTGGCGGCCGCCTA
CACGCCCGGGGAAGCGCAGGAGACCGGTGTGGCGCTTCGTAATCCCTGTTGTTCTTTCCCCTCACCGCCACCCTCATATT
CACACCACACTCTTCACTCTCTCTCACCGCCGAACCTTCCTCCTTGCCCTCCCCCCTCCCCCTGCTTCGTGTCGACCCAC
GACTGGTGGGTCTAGTGGCGACCTTTCGGCCACAGCCGGTCGTCGTCGTCGTTCTGCTTCTAGCAAACGATGCAGTCCGC
GGTGAGCCACCGACTGCTTTCGGCGGTTCAGACGATGGGGGCCGGAGGGCATCTTCTTCGGCGGCGGTTGCGGGAGGCGC
ATCTGGTGAGCCCTAGGTGGCCATTTTTACCACCATTCGGGGGTTTTCTTCGGTCGCTCTGCACCAGGTGTTGGAGCTAA
ATCCAGCAGATCTCATATAGGAGGTCCCGAGCTGGTTGTCTCAGGTTGATGGAAACATGAAGTAGAGAG
>chr2B_533
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGATTGACGGTGGTGGGTGCTGACATGA
CGTTTCAACTCTGAGGCCCTCGCCCAGACGCGTCCGAGGACTTGCCGAGAACTCATGATCAGCGTCAATTAGCTTGG--C
ACGCGTCCAAGGAAAGTTCAAATTTCAAAGATGCGCAACGTCGTCTATACTCGGCCGATACACAACACGATGGATATTGT
ACAA--------TAGCAGTAATTGAACAAGTCAGCTGCCATTTCTATGGGCACCTCCCTTAATTAAGTACTCCCCGTCGT
CGCCGACCGACCTTCCATTCAGGTTCCACCCAACGACAGACAATCAAGATGAGAAGCACGATCGAACTGCTACGTTGACA
ACATACACACGATTACGTTGGAGTGAAGAACAGAGCAACCGCGTAAGCCCGTTGACATTTTCTCCGGACAAGACTTTTAA
GTACTGGTCGACCGGCATTCCCTGGCTTACAGACAAT--TGATCAAGAGGGGAGGCTCTCGATCGAGCAGCAGCAGCAGC
AGCAAAGATGGTCAGGGCGATGGGTATTGCCGCGGCAAAAGGCTTCACCGCCGGTTCCATGCACTACACGCCCAGCGGCG
TCGTGTGTCTAGCTTTCGCCTTCGTGGCCGCGGTTGCCATCGTGGCCGTCGCCGTGTTTGGTTGCGCCGGCCACAAGAGC
TCCGGCGGGAAGAAGCCTCGACGTGGTCACGGCGGCTCCTACTGGGCAGCTGGAGCGGGCGCAGGCGCAGGCGTCTATGT
TGGAGACAGCGGTGTTAGCACAGGCGGTGGTGGCTGTGGCGGCGGAGGGGGAGGAGGTGGTGGCTGTGGAGGCGGAGGAG
GTGGTGGAGGTTGCTGAGAAAAGACATCAC--ACAGTGGATTATTACTGCAAGACC-ATGATATAATTTGGTTGGATAAA
TTTCACTTTATTCGAATATTTGTAAATAATACTTTCATTTTCGGAGATGTTGTAAATGCACGCTCACTTGTTTACATATT
TATACATTCATTCATATATGATCTATAATTTCA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>chr2D_533
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGATTGACGGTGGCGGGTGCCGACATGA
CGTTTCAACTCTCAGGCCCTCGCCCAGACGCGTCGGAGGACTTGACGAGAACTCATGATCATCGTCAATTAGCTTGG--C
ACGCGTCCAAGGAAAGTTCGAATTTCAAAGATGCGCAACCTCGTCTATACTCGGCCGATACACAACACGATGGATATATA
TTGTACTACTACTAGTAGTAATTGAACAAGTCAGCTGCCATTTCTATGG-CACCGCCTTCAATTAAGTACTCCCCGTCGT
CGCCGACCGACCTTCCATTCAGGTTCCACCCAACGGCAGACAATCAAGATAAGAAGCACGATGGAACTACTGCGTTGACA
ACA----CACGATAGCGTTGGAGTGCAGGACAGAGCAACCGCGTAAGTCCGCTGACATTTTCTCCGGACAAAGACTTTAA
GTACTGGTCGACCGGCGTTCAATTG-TTACAAACAATTTTGATCAAGAGCAGAAACTCTCGATCGAGCAGCAGCAGCAG-
-----AGATGGTCAGGGCGATGGGTATTGCCGCGGCAAAAGGCTTCACCGCCGGTTCCATGCACTACACGCCCAGCGGCG
TCGTGTGTCTAGCCTTCGCCTTCGTGGCCGCGGTTGCGATCGTGGCCGTCGCCGTGTTCGGCTGCGCCGGCCACAAGAGC
TCCGGCGGGAAGAAGCCTCGACGTGGTCACGGCGGCTCCTACTGGGCAGCTGGAGCGGGCGCAGGCGCAGGCATCTATGT
TGGAGACAGCGGTGTTAGCACAGGCGGCGGAGGCTGT------------GGAGGAGGTGGTGGC---GGAGGCTGCGGGG
GCGGAGGCGGTTGCTGAGGAAAGACATCATATACAGGGGATTATTACTGCAAGACCCATGATATTGTTTC----CATAAA
TTTCACTTCATTCAAATATTTGTAAATAATACTTTCA-TTTCGATGATGTTGTAAATGACCGCTCACTTGTTTACATATA
C--ATATTCATTCATA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
-----------S-------------------------S-------------S---S--------S------------SS-
-------------------S--------------------------------------------------------S-S-
-S------------------------------------------------------------------------------
----S--------------------------------------------------S------------------------
---S--SSSS-SSS---------------------------------S-------------------S------------
------------------------------------S----------------------------------S--------
-----------------------------------------------------------------S--------------
----------------------------S---------------------------------------------------
-----------------------------S--------------------------------------------------
------------------------------------------------------------------------S-------
------------------------S-------------------------------------------------------
-------------------------------------S---S-------S---------------S------S-------
-----------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_413
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CGTGCAT
ATACGCCCTGTCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_1770
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGCAAAATCAGCCGGTTTGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
