>input_sequence_83610
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--ATGGCGATGGTCCATGAGGCGAGGCAGGGCCGGCGAGGGCGCCGGGTGCGGCACGTTCGGCTGGGGTCGCTGCTCCGG
CTGCGGGTGCGGCTGTTCCGGCTCGCCGGCCTCGTCGTCCGGTGCATGGAGGAGCTCAGGTGCTGCCCTGGGATAAGGAG
GCGGCCCGCGCCGAGATCAGCGGCACGGCCGGCGGCGCTGCGGGGGAGGCAGAGCTCGGCTTCCTTCCATGCCGACCAGG
CCATTGCTGACTGCTTGGAGTTCATCAAGAGGTCCTACCTGCAGCAGCAGCAGCAGCCTGTGCAGGATGACGACCATACG
ACTTTTAGCTCGTAG-----------------------------------------------------------------
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>chr6D_1_TraesCS6D01G157100
GGCACTATCTCTTTATTTTGTCTGAATATCCAGAGAGGTCAAATCAATGTCGAGACAGCCCGATTATTTCCTAGCAAATA
AAGAACCTTGAAGGCATTTAGATTCTCCAAATAATACGCAAGTGC----ACAAAACAAAACGTGACTTGATGCAAGTGGG
TACATGACACATTGGATCAAGTATTTTAGTCATGGCAAGCTGCCATTGGCAACAGCTCGCATGACCTTTGTTTGCTCGTA
TATAAAAATTAAAAAGCATGATTTTCGTCCATGGATCTCTATTACATTGCTGCAAACTTTCTCAGGTCCTGTCAAGGCCC
ACAACAGGGTACAGAAGAAGAAAA---CGACGAAACCGAAGCCATCATTGTTGCCATTTGGGCCTTGTTTCCTGAAGGGT
CTTGATGCAT--------GCAGGACGGGACAGATCAGGCGTGTCAAAACCCACAAGC-----------CCAAGATTTTGA
ATAATTTGTGTGCGTGTGCGCGTGCGCGCGTGTGTGGTTGTCCTCTTAAAGCTATTATTATTGT----------------
-------------ACTCTCCATCTTGCTGGATTAAC--------------------------------------------
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-TAACAAGCACGAACGAAACCGTGGAGGGGCACACGGATTCCGTTCTGATTCAGATAGCGGTGCAATCTAC-------AA
CGCATCAGCATTCAGCAGCAGCCTGGTGCACGACAGGATCAAGGGCCGCACAGCATGACATGACGAGAGCATTCCTCCGA
AAGAGGATGGAGCCAAGAGAAATTTTCCAGGCGAGTAGTTTATGCAGGCGATAACGTATTAAAAACAGCGGCTCTGGCCG
CACCCCTGCGTCACACGGTGTCTTACTTACTGTACCACCTGACCGGCGCCATTTTTCCATCCACAAGGC--TTGAGCGAA
CGAGAAAACGACGGGCAAACACTCGGCGCTTACCGGTG---CGCCGGCGCCGCGCCTATATAAGAGGCCGCGCACACATG
GTGGACTTTACAT-----ACACCACATAGA-----GTTCCGGTCAGGCCAGCGGTAGTGAAGATACCAGGTGCAGCCACC
CGATGGCGATGGTCCATGAGGCGAGGCAGGGCCGGCGAGGGCGCCGGGTGCGGCACGTTCGGCTGGGGTCGCTGCTCCGG
CTGCGGGTGCGGCTGTTCCGGCTCGCCGGCCTCGTCGTCCGGTGCATGGAGGAGCTCAGGTGCTGCCCTGGGATAAGGAG
GCGGCCCGCGCCGAGATCAGCGGCACGGCCGGCGGCGCTGCGGGGGAGGCAGAGCTCGGCTTCCTTCCATGCCGACCAGG
CCATTGCTGACTGCTTGGAGTTCATCAAGAGGTCCTACCTGCAGCAGCAGCAGCAGCCTGTGCAGGATGACGACCATACG
ACTTTTAGCTCGTAGTGGACTCTGAAAACGTCTTATAAAAAG---TTACAGAGGGAGTAGTTAGTTGGTAGTTACCCTTC
TGGTGGTGGGTGCACAAGTTGACTTTGTATATCTCACTTTTGCTGCCTGCTGCCACTTTCTTGTAATGCTACTCCTACTT
ATTTCAAACATGGACACATGTTCTTTTTTACGCCCAAAAGCAAATGAACATATGT-CAAAAGGCGTGTCTGGAACTGATT
CTTGTCACATTCCTATAAGAGAAGAAAAAAAAA-----------CTGTGAAACTCCTACCAGAATAGTTAATGTTCTGTG
CCATCGAAATGTCA-TTTTCTTGGTCAATGCCTTGAGCGTTGATGGCTCGTTGGGCGGTAGTTTTCAGCAAGGAAGTCGG
TGAACTTGAGTCATGGATAGTGATCTAAGTGTGT-TATATATCCAACCTTCGCTTTCCAGAGCAGTTAGCTACTTAGCAA
TAACACAAAAGAATTACAGGATGAGAGCAGCTTGTGTCATACACCTACCCTCCCTTTCAGAAATTTCTATTTCGTTTTAA
ACCACATTATTCATCTATTTCGATTAAGAGCTAAATCCTCATGTTTATGGCGATGTAGACACGGTGATCGCAATTCAAAG
ATGGCAGAAAGATTGGGAAA-AAGGAAGAACTTGATAGATGAGACTCTTTATTTTAGTCTTGGTTCAAAAGAAAACCCTA
TACAAGGCTGTTGTCAAA-----AGGGAAAAGAAAGGCTACATCCCAAAATTTTGGTCACTGGTGAACA-------CCCT
TGTAGAAGTACTCCATAGCTGTTGATGCAGGACCTCCAAGTCAGACATACTTTGTTGCAATATATCCATTTGCCTTCAAT
GCCAGCGGGCGTCGACGATAACCCCCATGAATTGAAATTAATGTTATGAAAGAAGGGCAAATGCCCTTCAAAAGGTCTCC
TCCCTCCAGGTATCTGAGTCGATGTTACATG-------ATGCTGCAACACTGACAAGAGTATATTAATATCCTGCTCTAT
GCTTGAAAATAA
>chr6B_1
GGCACTATCTCTTTATTTTGTCTGAATAACCAGAGATGTCAAATCGTTGTCGAGACAGCCCGATTATTTCCTAGCAAATA
AAGAACCTTGAAGGCA-TTAGATTCTCCAAATAATACGCAAGTGCCATGACAAAACAAAACGTGACTTGATGCAAGTGGG
TACATGACACATTGGAT------------------CAAGCTGCCATTGGCAACAGCTCGCATGACCTTTGTTTGCTCG--
TATAAAAATTAAAAAGCATGATTTTCGTCCATGGATCTCTATTACATTGCTGCAAACTTTCTCAGGTCCTGTCAAGGCCC
ACAACAGGGTACAGAAGAAGAAGAAGGCGACGAAACCGATGCCATCATTGTTGCCATTTGGGCCTTGCTTCCTGAAGGGT
CTTGATGCATGCAGGCAGGCAGGACGGGACGTATCAGGCGTGTGAAAACTCACAGGC-----------CCAAGATTCTGA
ATAATTTGTGTGCGTG--------CGCGCGTGTGTGGTTGTCCTCTTAAAGCTATTATTATTGTA---------------
------------TACTCTCCATCTTGCTGAGTTAATTAACTA--------------------------------------
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-TAACAAGCATGAACGAAACCGTGGAGGGGCACACGGATTTCGTTCGGATTCAGATAGCGGTGCAATCTACTCCGTACAA
TGCATCAGCAGCAGGCAGCAGCCCGGTACACGACAGGATCAAGGGC-GCACAGCATGACATGACGAGAGCATTCCTCCGA
AAGAGGATGGCGCCAAGAGAAACTTTCCAGGCGAGTAGTTTATGCAGGCGATAACGTATTAAAAACAGCGGCTCTGGCCG
CACCCTTGCGTCACACAATGTCTTACTTACTGTACCACCTGACCGGCGCCATTTT-CCATCCATAAGCC--TTGAGCGAA
CGAGAAAACGACGGGCAAACACTCGGCGCTTACCGGTGGTGCGCCTGCGCCACGCCTATATAAGAGGCCGCGCACACATG
GTGGACTTTACAT-----ACACAACACA-AGCTCCGCTCCGTTCAGGCCAGTAGTAGTAAAGGTACCAGGTGCAGCCACC
CGATGGCGATGGTCCATGAGGCGAGGCAGGGCCGGCGAGGGCGCCGGGTGCGGCACGTCCGGCTGGGGTCGCTGCTCCGG
CTGCGGGTGCGGCTGTTCCGGCTCGCCGGCCTCGTCGTCCGGTGCATGGAGGAGCTCAGGTGCTGCCCTGGGATCAGGAG
GCGGCCCGCGCCGAGATCAGCGGGACGGCCGGCGCCACTGCGGGGGAGGGAGAGCTCGGCTTCCTTCCATGCCGACCAGG
CCATTGCTGACTGCTTGGAGTTCATCAAGAGGTCCTACCT---GCAGCAGCAGCAGCCTGTGCAGGATGACCACCATACG
ACTTTTAGCTCGTAGTGGACTCTGAAAACGTCTTATAAAAAGAAGTTACAGAGGGAGTAGTTAGTTAGTACTTACCCTTC
TGATGGTGGGTGCACAAGTTGACTTTGTATATCTCACTTTTGCTACCTGCTGCCACTTTCTTGTAATGCTACTCCTGCTT
ATTTCAAACATGGACAGATGTTCTTTCTTACGCCCAAAAGCAAATGAACAGATGT-AAAAAGGCATGTCTGGAACTGATT
CCTGTCACATTCCTATAAGAGAAGAAAAAAAAA-----------C-----------TACCAGAATAGTTAATGTTCTGTG
CCATCGAAATGATA-TTTTCTTGGTCAATGCCTTGAGCGTTGATGGCTCGTTGGGCGGTAGTTTTCAGCAAGGAAGTCGG
TGAACTTGAGTCATGGATAGTGATCCAAGTGTGTATATATATCCAACCTTCGCTTTCCAGAGCAGTTAGCTACTTAGCAA
TAACACAAAAGAATTACAGGATGAGAGCAGCTTGTGTCATACACCTACCCTCCCTTTCAGAAATGTCTATTTCGTTTTAA
ACCGCATTATTCATCTATTTGGTTTAAGAGCTAAATCCTCATGTTTATGGCCATGTAGACACGGTGATCGCAATTCAAAG
ATGGCAGAAAGATTGGGAAA-AAGGAAGAACTTGATAGATGAGACTCTTTATTTTAGTCTTGGTTCAAAAGAAAACCCTA
TACAAGGCTGTTGTCAAA-----AGGGAAAAGAAAGGCTACATCCCCAAATTTTGGTCACTGGTGAACA-------CCCT
TGTAGAAGTACTCCATAGCTGCTGATGCAGGACCTCCAAGTCAGACATGCTTTGTTGCAATATATCCATTTGTCTTCAAT
GCCAGCGG-CGTCGACGATAACCCCCACAAATCGAAATTAATGTTAGGAAAGAAGGGCAAATGCCCTTCAAAGGGTCTCC
TCCCTCCAGGTATCTGAGTCGATGTTACATG-------ATGCTGCAACACTGATAAGAGTATATTAATATCCTGCTCTAT
GCTTGAAAATAA
>chr6A_1
GGCACTATCTCTTTATTTTGTCTGAATATCCAGAGAGGTCAAATCGATGTCGAGACAGCCTGATTATTTCCTAGCAAATA
AAGAACCTTAAAGGCA-TTGGATTCTCCAAATAGTACGCAAGTGCCATGACAAA-CAAAACGTGACTTGATGCAAATGGG
TACATGACACATTGGATCAAGTATTTTAGTCATGGCAAGGTCCCATTTGCAACAGCTCGCATGGTTTGCTCCTGG-----
----------AAAAGGCATAATTTTCTTCCATGGATCTCCATTCCACTGCTGCAAACTTTCTCAGGTCCTGTCAAGGCCC
GCCACAGGGTACAGAAGAAG------GCGACGAAACCGAATCGATCAGTGTTGCCATTTGGGCCTTGCTTCCTGAAG---
-----TGCAT--------GCAGGACGGGACAGATCAGGCGTGTCAAAACTCACAGGCGCGTGTGCCCTCCATGATTTCGA
ATAATTTGTGTGCGTG--------CGCGTGTGTGTGATTGTGCTCTTAACGCTATTATTGTACTCCCTCCGTTCCAAAAT
ACTTGTCGTGGTTACTCTCCATCTTGCTCAATTAACTACTCCTTTTGTTTCTTTTTAGTCTGCATGTAAGATTTGATCAA
AGTCAAATTTTACTAATTTTGACTAAGTTTATAGAGAAAAATATCAAGATTCTTAATATGAAATATATATTGTTAGATGC
ATCATGAAATTATTATACCATATAGCTTTAGTGTTGTAGATGTTAATATTTTTTTCTACCGTTTCGAAAAAAATATTTTT
TTCTATAAAATTGATCAAACTTTATAAAATTTGACTTTAACTAAATTTTATATGCAGACTAAAAAGAAATGAAGAAAGTA
GTATCAAGCATGAACGAAACCATGGAG-GGCACACGGATTCCGTTCCGATTCAGATAGCGGTGCAATCTACAACG-----
------------CATCAGCAGCCTGGTACACGACAGGATCAAGGGC-GCACAGCATGACATGACGGGAGCATTCCTCCGA
AAGAGGATGGCGCCAAGAGAAAATTTCCAGGCGAGTGGTTTATGCAAGCGATAACGTATTAAAAACAGCGGCTCTGGCCG
CACCCCTGCGTCACGCGGTGTCTTACTTACTGTACCACCTGACCGGCGCCATTTT-CCATCCATAAAGCCTTTGAGCGAA
CGAGAAAACGACGGGCAAACACTCGGCGCTTACCGGTG---CGCCGGCGCCGAGCCTATATAAGAGGCCGCGCACACATG
GTGGACTTTACATTACACACACAACACA-A-----GCTCCGTTCAGGCCAGTGGTAGTGAAGATA-CAGGGGCAGCCACC
CGATGGCGATGGTCCATGAGGCGAGGCAGGGCCGGCGAGGGCGCCGGGTGCGGCACGTCCGGCTGGGGTCGCTGCTCCGG
CTGCGGGTGCGGCTGTTCCGGCTTGCCGGCCTCGTCGTCCGGTGCATGGAGGAGCTCAGGTGCTGCCCTGGGATCAGGAG
GCGACCCGCGCCGAGATCAGCGGCACGGCCGGCGGCACTGCGGGGGAGGGAGAGCTCGGTTTCCTTCCATGCCGACCAGG
CCATTGCTGAGTGCTTGGAGTTCATCAAGAGGTCCTACCT---GCAGCAGC------CTGTGCAGGATGACGACCATACG
ACTTTTAGCTCGTAGTGGACTCTGAAAACGTCTTATAAAAAG---TTACAGAGGGAGTAGTTAGTTGGTAGTTACCCTTC
TTGTGGTGGGTGCACAAGTTGACTTTGTATATCTCACTTTTGCTGCCTGCTGCCACTTTCTTGTAATGCTACTCCTACTT
ATTTCAAGCATGGACAAATGTTACTTTTTACGCCCGAAAGCAGATGAACATATGTAAAAAAGGCATGTTTGGAACTGATT
CTTGTCGCATTCCTATAAGAGAAGAAATAAAAACTGTGGAACTCC-----------TACCAGAATAGTTAATGTTCTGTG
CCATCGAAATGTCATTTTTCTTGGTCAATGCCTTGAGCGTTGGTGGCTCGTTGGGCGGTAGTTTTCAAC----AAGTCGG
TGAACTTGAGTCATGGATAGTGATCTCCAAGTGTATATATACCCAACCTTCGCTTTCCAGAGCAGTTAGCTACTTGGCCA
CAAGACAAAAGAATTACAGGATGAGGGCAGCTTGTGTCCTACACCTA----CCGTTTCAGACATGACTATTTCGTT-TAA
ACCACATTATTCATGT------------AGCTAAATCCTCATGTTTATTGCCATGAAGACACGGTGATCGCAATTCAAAG
AGGGCAGAAAGATTGGGAAAAAAGGAAGAACTTGATAGATGAGACACTTTATTTTAGTCTT-GTTCAAAAGAAAACCCTA
TACAAGGCTGTTGTCAAATCAAAAGGGAAAAGAAAGGCTACACCCCAAAATTTTGGTCACTGGTGAACAGACCACTCCCT
TGTATAAGTACTCCATAGCTGTTGATGCAGGACCTCAAAGTCAGACATACTTTGTTGCAATATATCCATTTGCCTTCAAT
GCCAGCGG-CGTCGACGATAACCCCCACGAATCGAAATTAATGTTAGGAAAGAAGGGAAAATGCCCTTCAAAAGGTCTCC
TCCCTCCAGGTATCTGAGTCGATGTTACATGTTACATGATGCTGCCACACTGACAAGAGTACATTAATATCCTGCTCTAT
GCTTGAAAATAA
>SNPs
---------------------------------------------S----------------------------------
----------------S---------------------------------------------------------------
------------------------------------------------------------------------------SS
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----------------------S--------------------------------------------S------------
-------------------------------------------------S----S-------------------------
----------------SSSSSSSS--------------------------------------------------------
-----------------------------S--------------------------------------------------
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----------S-----------------------------------S---------------------------------
S---------SS---------------S------------------S---------------------------------
----------S-----------S---------------------------------------------------------
-------------------------------------------------------S-------S----------------
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----------------------S---S-S-------S----S---------S----------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------S-----
------------------------------------S------------S------------------------------
----------------------------------------SSS-------------------------------------
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----------------S---------------------------------------S-------S---------------
---------------------------------------------SSSSSSSSSSS------------------------
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----------------------------------------------------------------S---------------
--------------------S-S----------------------------S----------------------------
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--------S------------------S----S-------------S---------------------------------
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>forward_1184
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--------------------------------------------GGCGCCATTTTTCCATCCAC----------------
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>reverse_2292
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---------------------------------------------------GATGTAGACACGGTGATCGCA--------
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