CLUSTAL X (1.81) multiple sequence alignment input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 CGATT--------------------------------------------- chr5D_1 CGATT--------------------------------------------- chr5D_1 CCAGATCGACATGCATGTCACTTACAACGTGCGGTTGTCCATGTATCTCT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CATGGCCACACTTTCTTCTCCTAAGCATGCTATTTAACCCGACCAAAATT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTCGCACATAAAATATAACTTGGTTAGCGTATAACACATGATCACACCAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAAAGGCCCACCAAATCTACACGTTATAAATAAATAAAAATAAAACACAC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TATCGTCTCCCGCGCCCGCCAAACTAAATATTCCATCAGTTTCAAATATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGGGGTATTATTATTTTAGAAAGTCAAAATTATTTATCTTTGACCAAGTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CAGAGAAAAAATATCGACATCCATAATATTAAACAAAAAAGGTATATAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTCATTTCGTGATGAATGTAAAAATATTGATTTGATATTATGGTTTTTGA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CATATTTTTCTATAAATTCAATCAAATTGAAAAGGTTTGCCTTTTCAAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGGCAATATACCTACTATGTTTAAACAGAGTGATTATTTGTTAAGAAAGC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CAACAACACGAACGACGCAACAAAGCGCGTCCAACCTTTCTAGTTAAGAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GATTTTGACATGGTCAACAATTTCTCAAGCTACCCCATTCAATTCTTTTA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTTCACTATGTTCCCTGATTTTGAAGCTCTTTCATTCAGGTATTCAATTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ------------------TTAACTGTGCCAATGATTTTTCAAGTCAATCA chr5D_1 ------------------TTAACTGTGCCAATGATTTTTCAAATCAATCA chr5D_1 TGTATTTGGTTTACGATTTTAACTGTGCCAATAATTTTTCAAATCAATCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs ------------------------------------------S------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 CCAGCAACCGGCTTATAACAACATAATAATCCGGTGCACCTTCCCACCAC chr5D_1 CCAGCAACCGGCTTATAACAACATAATAATCCGGTGCACCTTCCCACCAC chr5D_1 CCAGCAACCGGCTTATAACAACATAATAATCCGGTGCACCTTCCCACCAC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 CTGG---------------------------------------------- chr5D_1 CTGG---------------------------------------------- chr5D_1 CTGGAAAAAAGAAGCGTCGTCATGTGATATTGTAGCACTAATATAGTATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TATGCAGCCATCGACACAAAAATTTCCCCACATAAATATAGCTTGGTTAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CGTATAACACATAATCACACCAGGAAAGGCCCACCAAATCAACGAATTAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GGATAAAGATAAAACACACTATCATCTTCCGCACCCGCCAAACTAAATAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCCATCAGTTTCAAATATAAGGGGTATTAGTATTTTAGAAAGTCAAAATT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTTATCTTTGACCAAGTTCAGAGAAAAAATATCGACATCCATAATATTA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AACAAAAAAGGTATAGAAATTCATTTCACGATGAATCTAAAAATACTGAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTGATATTATGGTTTTTGACATATTTTTTTATAAATTTAATCAAATTGAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAGGTTTGCCTTTTCAAAAAGGCAATATACCTTATATGTTTAAACAGAGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTTTATTTGTTAAGAAAGCCAACAACACGAACGACGCAACAAAGCGCATC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CAACCTTTCTAGTTAAGATGATTTTGACCTGGTCAACAATTTCTCAAGCT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ACCCCATTCAATTCTTTTAGTTCACTATGTTCCCTGATTTTGAAGCTCTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCATTCAGGTATTCAATTTTGTATTTGGTTTACGATTTTAACTGTGCCAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TAATTTTTCAAATCAATCACCAGCAACCGGCTTATAACAACATAATAATC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TGGTGCACCTTCCCACCACCTGGAAAAAAGAAGCGTCATCATGTGATATT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTAGCACTAATATAGTATATATGCAGCCATCGACACAAAAATTTCCCCAC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATAAATATAGCTTGGTTAGTGTATAACACATAACCACACCAGGAAAGGCC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CACCAAATCAACGAGTTATGAATAAAGATAAAACACACTATCATCTTCCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CACCCGCGAAACTAAATATTCCATCAGTTTCAAATATAAGGGGTATTATT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTTTAGAAAGTCAAAATTATTTATCTTTGACCAAGTTCAGAGAAAAATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TATCGACATCCATAATATTAAACAAAAAAGGTATAGAAATTCATTTCGCG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATGAATCTAAAAATACTGATTTGATATTATGGTTTTTGACATATTTTTCT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATAAATTTAATCAAATTGAAAAAGGTTTGCCTTTTCAAAAAGGCAATATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CCTTATATGTTTAAACAGAGTAATTATTTGTTAAGAAAGCCAACAACACG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AACGACGCAACAAAGCGCGTCCAACCTTTCTAGTTCAGATGATTTTGACC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TGGTCAACAATTTCTCAAGCTACCCCATTCAATTCTTTTAGTTCACTATG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTCCCTGATTTTGAAGCTCTTTCATTCAGTTTTCAATTTTGTATTTGGTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TACGATTTTAACTGTGCCAATAATTTTTCAAATCAATCACCAGCAACCGG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CATATAACAACATAATAATCCGGTGGACCTTCCCACCACCTGGAAAAAAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAGCGTCATCATGTGATATTGTAGCACTAATATAGTATATATGCAGCCAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CGACAGAAAAAATTGCCCACATAAATATAGCTTGGTTAGCGTATAACACA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TAATCACACCAGGAAAGGCCCACCAAATCAACGAGTTATGAATAAAGATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAACACACTATCATCTTCCGCACCCGCGAAACTAAATATTCCATCAGTTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CAAATATAAGGGGTATTATTATTTTAGAAAGTCAAAATTATTTATCTTTG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ACCAAGTTCAGAGAAAAATATATCGACATCCATAATATTAAACAAAAAAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTATAGAAATTCATTTCGCGATGAATCTAAAAATACTGATTTGATATTAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GGTTTTTGACATATTTTTCTATAAATTTAATCAAATTGAAAAGGTTTGCC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTTTCAAAAAGGCAATATACCTTATATGTTTAAACAGAGTAATTATTTGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TAAGAAAGCCAACAACACGAACGACGCAACAAAGCGCGTCCAACCTTTCT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGTTCAGATGATTTTGACCTGGTCAACAATTTCTCAAGTTACCCCATTCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTCTTTTAGTTCACTATGGTCCCTGATTTTGAAGCTCTTTCATTCAGGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTCAATTTTGTATTTGGTTTACGATTTTAACTGTGCCAATAATTTTTCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AATCAATCACCAGCAACCGGCTTATAACAACATAATAATCCGGTGGACCT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCCCACCACCTGGAAAAAAGAAGCGTCATCATGTGATATTGTAGCACTAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TATAGTATAAATGCAGACATCGACAGAAAAATTTCCCCACATAAATATAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CTTGGTTAGCGTATAACACATAATCACACCAGGAAAGGCCCACCAAATCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ACGAGTTATGAATAAAGATAAAACACACTATCATCTTCCGCACCCGCGAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ACTAAATATTCCATCAGTTTCAAATATAAGGGGTATTATTATTTTAGAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTCAAAATTATTTATCTTTGACCAAGTTCAGAGAAAAAATATCGACATCC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATAATATTAAACAAAAAAGGTATAGAAATTCATTTCGCGATGAATCTAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AATACTGATTTGATATTATGGTTTTTGACATATTTTTCTATAAATTTAAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CAAATTGAAAAGGTTTGCCTTTTCAAAAAGGCAATATACCTTATATGTTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAACAGAGTGATTATTTGTTAAGAAAGCCAACAACAGGAACGGCGCAACA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAGCGCGTCCAACCTTTCTAGTTAAGATGATTTTGACCTGGTCAACAATT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCTCAAGCTACCCCATTCAATTCTTTTAGTTCACTATGTTCCCTGATTTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GAAGCTCTTTCATTCAGGTATTCAATTTTGTATTTGGTTTACGATTTTAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CTGTGCCAATAATTTTTCAAATCAATCACCAGCAACCGGCTTATAACAAC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ---------------------------------AAAAAAGAAGCCTCATC chr5D_1 ---------------------------------AAAAA-GAAGTGTCATC chr5D_1 ATAATAATCTGGTGCACCTTCCCACCACCTGGAAAAAA-GAAGCGTCATC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs --------------------------------------S-----S----- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ATGTGATATTGTAGCACTAATATAGTATATATGCAGCCATCGACACAAAA chr5D_1 ATGTGATATTGTAGCACTAATATAGTACATATGCAGCCATCGACACAAAA chr5D_1 ATGTGATATTGTAGCACTAATATAGTATATATGCAGCCATCGACACAAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ATTTCCCCACATAA------------------------------------ chr5D_1 ATTTCCCCACATAA------------------------------------ chr5D_1 ATTTCCCCACATAAATATAGCTTGGTTAGCGTATAACACATAATCACACC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGGAAAGGCCCACCAAATCAACGAGTTATGAATAAAGATAAAACACACTA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCATCTTCCGCACCCGCCAAACTAAATATTCCATCAGTTTCAAATATAAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GGGTATTAGTATTTTAGAAAGTCAAAATTATTTATCTTTGACCAAGTTCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GAGAAAAAATATCGACATCCACAATATTAAACAAAAAAGGTATAGAGATT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CATTTCGCGATGAATCTAAAAATACTGATTTGATATTATGGTTTCTGACA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TATTTTTCTATAAATTTAATCAAATTGAAAAATTTTGCCTTTTCAAAAAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GCAATATACCTTATATGTTTAAACAGAGTGATTATTTGTTAAGAAAGCCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ACAACACGAACGACGCAACAAAGCGCGTCCAACCTTTCTAGTTAAGATGA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTTTGACCTGGTCAACAATTTCTCAAGCTACCCCATTCAATTCTTTTAGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCACTATGTTCCCTGATTTTGAACCTCTTTCATTCAGGTATTCAATTTTG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TATTTGGGTTACGATTTTAACTGTGCCAATAATTTATCAAATCAATCACC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ACCAACTGGCTTATAACAACATAATAATCCGGTGCACCTTCCCACCACCT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GGAAAAAAGAAGCGTCATCATGTGATATTGTAGCACTAATATAGTATATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ---------------------------------ATATAGCTTGGTTAGTG chr5D_1 ---------------------------------ATATAGCTTGGTTAGCG chr5D_1 TGCAGCCATCGACATAAAAATTTCCCCACATAAATATAGCTTGGTTAGCG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs ------------------------------------------------S- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TATAACACATAATCACACCAGGAAAGGCCCACCAAATCAACGCGTTATAA chr5D_1 TATAACACATAATCACACCAGGAAAGGCCCACCAAATCAACGCGTTATG- chr5D_1 TATAACACATAATCACACCAGGAAAGGCCCACCAAATCAACGAGTTATG- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs ------------------------------------------------SS forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ATAAATAAACATAAAAC--------------------------------- chr5D_1 ---AATAAAAATAAAAC--------------------------------- chr5D_1 ---AATAAAAATAAAACACACTATCATCTTCTGCACCCGCCAAACTAAAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs SSS------S---------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTCCATCAGTTTCAAATATAAGGGGTATTAGTATTTTAGAAAGTCAAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTATTTATCTTTGACCAAGTTCAGAGAAAAAATATCGACATCCATAATAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TAAACAAAAAAGGTATAGAAATTCATTTCGCGATGAATCTAAAAATACTG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTTGATTTGTTTTTGACATATTTTCCTATAAATTTAATCAAATTGAAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GGTTTGCCTTTTCAAAAAGGCAATATACCTACTATGTTTAAACAGAGTGA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTACTTGTTAAGAAAGCCAACAACACGAACGACGCAACAAAGCGCGTCAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ACCTTTCTAGTTAAGATGATTTTGACCTGGTCAACAATTTCTCAAGCTAC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CCCATTCAATTCTTTTAGTTCACTATGTTCCCTGATTTTGAAGCTCTTTC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTCAGGTATTCAATTTTGTATTTGGTTTACGATTTTAACTGTGCCAATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATTTTTCAAATCAATCACCAGCAACCGGCTTATAACAACATAATAATCCG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTGGACCTTCCCACCACCTGGAAAAAAGAAGCGTCATCATGTGATATTGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGCACTAATATAGTATATATGCAGACATCGACACAAAAATTTCCCCACAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAATATAGCTTGGTTAGCGTATAACACATAATCACACCAGGAAAGGCCCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CCAAATCAACGAGTTATGAATAAAGATAAAACACACTATCATCTTCCGCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CCCGCGAAACTAAATATTCCATCAGTTTCAAATATAAGGGGTATTAGTAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTTAGAAAGTCAAAATTATTTATCTTTGACCAAGTTCAGAGAAAAAATAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CGACATCCATAATATTAAACAAAAAAGGTATAGAAATTCATTTCGCGATG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AATCTAAAAATACTGATTTGATATTATGGTTCTTGACATATTTTTCTATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AATTTAATCAAATTGAAAAGGTTTGCCTTTTCAAAAAGGCAATATACCTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATATGTTTAAACAGAGTGATTATTTGTTAAGAAAGCCAACAACAGGAACG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GCGCAACAAAGCGCGTCCAACCTTTCTAGTTAAGATGATTTTGACCTGGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CAACAATTTCTCAAGCTACCCCATTCAATTCTTTTAGTTCACTATGTTCC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CTGATTTTGAAGCTCTTTCATTCAGATATTCATTTTCGTATTTGGTTTAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GATTTTAACTGTGCAAATAATTTGTCAAAGCAATCACCAGCAACCGGCTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATAACAACATAATAATCCGGTGCACCTTCCCACCACCTGGAAAAAAGAAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CGTCATCATGTGATATTGTAGCACTAATATAGTATATATGCAGCCATCGA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CACAAAAATTTCCCCACATAAATATAGCTTGGTTAGCGTATAACACATAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TCACACCAGGAAAGGCCCACCAAATCAACGAGTTATGAATAAAGATAAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CACTACCATCTTCCGCACCCGCCAAACTAAATATTCCATCAGTTTCAAAT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATAAGGGGTATTAGTATTTTAGAAAGTCAAAATTATTTATCTTTGACCAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GTTCAGAGAAAAAATATCGACATCCATAATATTAAACAAAAAAGGTATAG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAATTCATTTCGCGATGAATCTAAAAATACTGATTTGATATTATGGTTTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TGACATAATTTTCTATAAATTTAATCAAATTGAAAAGGTTTGCCTTTTCA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AAAAGGCAATATACCTTATATGTTTAAACAGAGTGATTACTTGTTAAGAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 AGCCAACAACACGAACGACGCAACAAAGCGCGTCCAACCTTTCTAGTTAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 GATGATTTTGACCTGGTCAACAAATTCTCAAGCTACCCCATTCAATTCTT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTAGTTCACTATGTTCCCTGATTTTGAAGCTCTTTCATTCAGGTATTCAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTTTGTATTTGGTTTACGATTTTAACTGTGCCAATAATTTTTCAAATCAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TTACCAGCAACCGGCTTATAACAACATAATAATCCGGTGCACCTTCCCAC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 CACCTGGAAAAAAGAAGCGTCATCATGTGATATTGTAGCACTAATATAGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 ATATATGCAGACATCGACATAAAAATTTCCCCACATAAATATAGCTTGGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 TAGCGTATAACACATAATCACACCAGGAAAGGCCCACCAAGTCAACGAGT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ------------------ACACTATCGTCTCCCGCACCGGCCAAACTAAA chr5D_1 ------------------ACACTATCATCTCCCGCACCCGCCAAACTAAA chr5D_1 TATGAATAAAGATAAAACACACTATCATCTTCCGCACCCGCCAAACTAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs --------------------------S-----------S----------- forward_6704 --------------------------------CGCACCGGCCAAACTAAA reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TATCCCATCAGTTTCAAATATAAGGGGTATTAGTATTTTAGAAAGTCAAA chr5D_1 TATTCCATCAGTTTCAAATATAAGGGGTATTAGTTTTTTAGAAAGTGAAA chr5D_1 TATTTCATCAGTTTCAAATATAAGGGGTATTAGTTTTTTAGAAAGTAAAA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs ---S------------------------------S-----------S--- forward_6704 TATC---------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ATTATTTATCTTTGACCAAGTTCAAAGAAAAAATATCGACATCCATAATA chr5D_1 ATTATTTATCTTTGACCAAGTTTAGAGAAAAAATATCGACATCCATAATA chr5D_1 ATTATTTATCTTTGACCAAGTTCAGAGAAAAAATATCGACATCCATAATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs ------------------------S------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TTAAACAAAAAAGGTATAGAAATTCATTTCGTGATGAATCTAAAAATACT chr5D_1 TTAAACAAAAAAGGTATATAAATTCATTTCGTGATGAATCTAAAAATACT chr5D_1 TTAAACAAAAAAGGTATATAAATTCATTTCGTGGTGAATCTAAAAATACT chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs ------------------S------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GATTTGATATTATGGTTTTTGACATATTTTTGTATAAATTTAATCAAATT chr5D_1 GATTTGATATTATGGTTTTTGACATATTTTTGTATAAA-TTAATCAAATA chr5D_1 GATTTGATATTATGGTTTTTGACATATTTTTGTATAAA-TTAATCAAATA chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs --------------------------------------S----------S forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GAAAAGGTTTGCCTTTTCAAAAAGGCAGTATACCTTATATGTTTAAATAG chr5D_1 GAAAAGGTTTGCCTTTTCAAAAAGGCAATATACCTTATATGTTTAAAGAG chr5D_1 GAAAAGGTTTGCCTTTTCAAAAAGGCAATATACCTTATATATTTAAC-AG chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs ---------------------------S-------------------S-- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AGTGATTATTTGTTGAGAAACCCAACAACACGAACGACGTAACAAAGCGC chr5D_1 AGTGATTATTTGTTGAGAAACCCAACAACACGAATGACGTAACAAAGCGC chr5D_1 AGTGATTATTTGTTGAGAAACCGAACAACACGAACGACGTAACAATGCGC chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GTCCAACCTTTCTAGTTCAGATGATTTTCAAAAGAAAAGTACTGATGGTC chr5D_1 GTCCAACCTTTCTAGTTCAGATGATTTTCAAAAGAAAAGTACTGATGGTC chr5D_1 GTCCAACCTTTCTAGTTCAGATGATTTTTAAAAGAAAAGTACTGATGGTC chr5B_601 ------------TAGTTGGGATGATTTTCAAAAGAAAAGTAGTGACGGTG chr5B_601 ------------TAGTTGGGATGATTTTCAAAAGAAAAGTAGTGACGGTG chrUn_601 ------------TAGTTGGGATGATTTTCAAAAGAAAAGTAGTGACGGTG chrUn_601 ------------TAGTTGGGATGATTTTCAAAAGAAAAGTAGTGACGGTG chrUn_601 ------------TAGTTGGGATGATTTTCAAAAGAAAAGTAGTGACGGTG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 CTCCATGATGCATGGCCATGTCAGAAGTAGATCAGTAGAATTTTATCAGG chr5D_1 CTCCATGATGCATGGCCATGTCAGAAGTAGATCAGTAGAATTTTATCAGG chr5D_1 CTCCATGATGCATGGCCATGTCAGAAGTAGATCAGTAGAATTTTATCAGG chr5B_601 CTCGATGATGCATGGCCAAA---------------------TTTATCAGG chr5B_601 CTCGATGATGCATGGCCAAA---------------------TTTATCAGG chrUn_601 CTCGATGATGCATGGCCAAA---------------------TTTATCAGG chrUn_601 CTCGATGATGCATGGCCAAA---------------------TTTATCAGG chrUn_601 CTCGATGATGCATGGCCAAA---------------------TTTATCAGG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AATGACCCCGTGCATGCCTTCCTCATA------------ACATTTACTTG chr5D_1 AATGACCCCGTGCATGCATTCCTCGTA------------ACATTTACTTG chr5D_1 AATGACCCCGTGCATGCATTCCTCATA------------GCATTTACTTG chr5B_601 AATGACCCCGTGTATGCATGCATGCATGCATTTCTCGGGACATTTACTTG chr5B_601 AATGACCCCGTGTATGCATGCATGCATGCATTTCTCGGGACATTTACTTG chrUn_601 AATGACCCCGTGTATGCATGCATGCATGCATTTCTCGGGACATTTACTTG chrUn_601 AATGACCCCGTGTATGCATGCATGCATGCATTTCTAGGGACATTTACTTG chrUn_601 AATGACCCCGTGTATGCATGCATGCATGCATTTCTCGGGACATTTACTTG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AACCATCGAAAATAAAGCTTTCTAGCTAATCCCTTGGCACCAATTTGTGG chr5D_1 AACCATCGAAAATAAAGCTTTCTAGCTAATCCCTTGGCACCAATTTGTGG chr5D_1 AACCATCGAAAATAAAGCTTTCTAGCTAATCCCTTGGCACCAATTTGTGG chr5B_601 AACCATCGAAAATAAAGCTTTCT------------GGCACCAATATGTGG chr5B_601 AACCATCGAAAATAAAGCTTTCT------------GGCACCAATATGTGG chrUn_601 AACCATCGAAAATAAAGCTTTCT------------GGCACCAATATGTGG chrUn_601 AACCATCGAAAATAAAGCTTTCT------------GGCACCAATATGTGG chrUn_601 AACCATCGAAAATAAAGCTTTCT------------GGCACCAATATGTGG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TTGGGTAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGACATGCA chr5D_1 TTGGATAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGACATGTA chr5D_1 TTGGATAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGACATGCA chr5B_601 TTGGGTAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGGCATGCA chr5B_601 TTGGGTAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGGCATGCA chrUn_601 TTGGGTAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGGCATGCA chrUn_601 TTGGGTAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGGCATGCA chrUn_601 TTGGGTAAAAATAAGGAGGAATGGCCACCGTGCACCCAGATCGGCATGCA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TGTCACTT-ACAACGTGGGGTTGTCCATGTATCTCTCACGGCCACACTTT chr5D_1 TGTCACTT-ACAACGTGGGGTTGTCCATGTATCTCTCACGGCCACACTTT chr5D_1 TGTCAC-T-ACAACGTGGGGTTGTCCATGTATCTCTCATGGCCACACTTT chr5B_601 TGTCAC-TTACAACGTCAGGTTGTCCATGTATCTCTCATGGCCACACTTT chr5B_601 TGTCAC-TTACAACGTCAGGTTGTCCATGTATCTCTCATGGCCACACTTT chrUn_601 TGTCAC-TTACAACGTCAGGTTGTCCATGTATCTCTCATGGCCACACTTT chrUn_601 TGTCAC-TTACAACGTCAGGTTGTCCATGTATCTCTCATGGCCACACTTT chrUn_601 TGTCAC-TTACAACGTCAGGTTGTCCATGTATCTCTCATGGCCACACTTT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TTTCTCCTAAGCATGCTATTTAACCGGACAATGGCCAGAACTCCATCCAG chr5D_1 TTTCTCCTAAGCATGCTATTTAACCGGACAATGGCCAGAACTCCATCCAG chr5D_1 TTTCTCCTAAGCATGCTATTTAACCGGACAATGGCCAGAACTCCATCCAG chr5B_601 CTTCTCCTAAGCATGCTATTTAACCGGGCAATGGCCAGAACTCCATCCAG chr5B_601 CTTCTCCTAAGCATGCTATTTAACCGGGCAATGGCCAGAACTCCATCCAG chrUn_601 CTTCTCCTAAGCATGCTATTTAACCGGGCAATGGCCAGAACTCCATCCAG chrUn_601 CTTCTCCTAAGCATGCTATTTAACCGGGCAATGGCCAGAACTCCATCCAG chrUn_601 CTTCTCCTAAGCATGCTATTTAACCGGGCAATGG---GAACTCCATCCAG chr5B_907 -------------------------------TGGCCAGAACTCCATCTAG chr5A_907 -------------------------------TGGCCAGAACTCCATCTAG SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AAACCATCATCTCCTCATCAACAACCTCCTTCTCAACCC----GTCATAC chr5D_1 AAACCATCATCTCCTCATCAACAACCTCCTTCTCAACCC----GTCACAC chr5D_1 AAACCATCATCTCCTCATCAACAACCTCCTTCTCAACCC----GTCATAC chr5B_601 AAACCATCATTTCCTTGTCAACAACCTCCTTCTCAACCCCCTGGTCATAC chr5B_601 AAACCATCATTTCCTCATCAACAACCTCCTTCTCAACCCCCTGGTCATAC chrUn_601 AAACCATCATTTCCTCATCAACAACCTCCTTCTCAACCCCCTGGTCATAC chrUn_601 AAACCATCATTTCCTCGTCAACAACCTCCTTCTCAACCCCCTGGTCATAC chrUn_601 AAACCATCATTTCCTCATCAACAACCTCCTTCTCAACCCCCTGGTCATAC chr5B_907 AAACCATCATCTCCTCATCAACAACCTCCTTCTCAACCC----GTCATAC chr5A_907 AAACCATCATCTCCTCATCAACAACCTCCTTCTCAACCC----GTCATAC SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -----------------------------ATGGCGCTGAATACTAGGAAT chr5D_1_TraesCS5D01G000300 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chr5D_1 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chr5D_1 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chr5B_601 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chr5B_601 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chrUn_601 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chrUn_601 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chrUn_601 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT chr5B_907 GTACCTTGTGGAAGTAGTCTCAAGAAATAATGGCGCTGAATAATAGGAAT chr5A_907 GTACCTTGTGGAAGTAGTCTCAAGAAAGAATGGCGCTGAATACTAGGAAT SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 GCAATCGTTGCCGTTCTCCTCCTCGTCGTGATGGTCGTGGCGGTCTCAAC chr5D_1_TraesCS5D01G000300 GCAATCGTTGCCGTTCTCCTCCTCGTCGTGATGGTCGTGGCGGTCTCAAC chr5D_1 GCAATCGTTGCCGTTCTCCTCCTCGTCGTGATGGTCGTGGCGGTCTCAAC chr5D_1 GCAATCGTTGCCATTCTCCTCCTCGTCGTGATGGTCGCGGCGGTCTCAAC chr5B_601 GCAATCGTTGCCCTTCTCCTCCTCGTCGTGAT---------GGTCTCAAC chr5B_601 GCAATCGTTGCCCTTCTCCTCCTCGTCGTGAT---------GGTCTCAAC chrUn_601 GCAATCGTTGCCCTTCTCCTCCTCGTCGTGAT---------GGTCTCAAC chrUn_601 GCAATCGTTGCCCTTCTCCTCCTCGTCGTGAT---------GGTCTCAAC chrUn_601 GCAATCGTTGCCCTTCTCCTCCTCGTCGTGAT---------GGTCTCAAC chr5B_907 GCAATCGTTGCCGTTCTCCTCCTCGTCGTGAT---------GGTCTCAAC chr5A_907 GCAATCGTTGCCGTTCTCCTCCTCGTCGTGAT---------GGTCTCAAC SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 ACCAGCAGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chr5D_1_TraesCS5D01G000300 ACCAGCAGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chr5D_1 ACCAGCAGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chr5D_1 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chr5B_601 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chr5B_601 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chrUn_601 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chrUn_601 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chrUn_601 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chr5B_907 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT chr5A_907 ACCAGCGGTAACTGCCCAAGAGGACTGCTGGGACAAATGTTTCAAGGACT SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 GCAAGGCAAAAATGGCAATGGAAGTGTGCAACCAAAAGTGCATTGACTTT chr5D_1_TraesCS5D01G000300 GCAAGGCAAAAATGGCAATGGAAGTGTGCAACCAAAAGTGCATTGACTTT chr5D_1 GCAAGGCAAAAATGGCAATGGAAGTGTGCAACCAAAAGTGCATTGACTTT chr5D_1 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT chr5B_601 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT chr5B_601 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT chrUn_601 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT chrUn_601 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT chrUn_601 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT chr5B_907 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT chr5A_907 GCAAGGCAAAAATGGCAATGGAAGTTTGCAACCAAAAGTGCATTGACTTT SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 TGCAAGTATCAAGCTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA chr5D_1_TraesCS5D01G000300 TGCAAGTATCAAGCTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA chr5D_1 TGCAAGTATCAAGCTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA chr5D_1 TGCATTTATCAAGCTGGAGCCAGAGAATATGTTAAGATGGCTGGCGATAA chr5B_601 TGCAAGTATCAAGCTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA chr5B_601 TGCAAGTATCAAGCTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA chrUn_601 TGCAAGTATCAAGCTGGAGCCCGAGAATATGTTAAGATGGCTGGCGATAA chrUn_601 TGCAAGTATCAAGCTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA chrUn_601 TGCAAGTATCAAGCTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA chr5B_907 TGCAAGTATCAAACTGGAGCCGGAGATTATGTTAAGATGGCTGGCGATAA chr5A_907 TGCAAGTATCAAACTGGAGCCGGAGAATATGTTAAGATGGCTGGCGATAA SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 ACTCAAGGAGGCCAAAACTGCCTCTCCAGAACAGGCCACTAAACTCAAGA chr5D_1_TraesCS5D01G000300 ACTCAAGGAGGCCAAAACTGCCTCTCCAGAACAGGCCACTAAACTCAAGA chr5D_1 ACTCAAGGAGGCCAAAACTGCCTCTCCAGAACAGGCCACTAAACTCAAGA chr5D_1 ACTCAAGGAGACCAAAACTGCCTCTCCAGAACAGGCCACTATACTCAAGA chr5B_601 ACTCAAGGAGACCAAAACTGCCTCTCCGGAACAGGCCACTAAACTCAAGA chr5B_601 ACTCAAGGAGACCAAAACTGCCTCTCCGGAACAGGCCACTAAACTCAAGA chrUn_601 ACTCAAGGAGACCAAAACTGCCTCTCCGGAACAGGCCACTAAACTCAAGA chrUn_601 ACTCAAGGAGACCAAAACTGCCTCTCCGGAACAGGCCACTAAACTCAAGA chrUn_601 ACTCAAGGAGACCAAAACTGCCTCTCCGGAACAGGCCACTAAACTCAAGA chr5B_907 ATTCAAGGAGACCAAAACTGCCTCTCCAGAACAGGCCACTAAACTCAAGA chr5A_907 ACTCAAGGAGACCAAAACTGCCTCTCCAGAACAGGCCACTAAACTCAAGA SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 ATGAAGCTACCACCTACT----TAGAACGTGCCAAAGTCCTCAGCGATAA chr5D_1_TraesCS5D01G000300 ATGAAGCTACCACCTACT----TAGAACGTGCCAAAGTCCTCAGCGATAA chr5D_1 ATGAAGCTACCACCTACT----TAGAACGTGCCAAAGTCCTCAGCGATAA chr5D_1 ATCAAGCTACCACCTACT----TAGAACGTGCCAAAGTCCTCAGCGATAA chr5B_601 ATGAAGCTAGCACCTACT----TAGAACGTGCCAAAGTCCTCAGTGATAA chr5B_601 ATGAAGCTAGCACCTACT----TAGAACGTGCCAAAGTCCTCAGTGATAA chrUn_601 ATGAAGCTAGCACCTACT----TAGAACGTGCCAAAGTCCTCAGTGATAA chrUn_601 ATGAAGCTAGCACCTACT----TAGAACGTGCCAAAGTCCTCAGTGATAA chrUn_601 ATGAAGCTAGCACCTACT----TAGAACGTGCCAAAGTCCTCAGTGATAA chr5B_907 ATGAAGCTACCACCTACTTAATTAGAACGTGCCAAAGTCCTCAGTGATAA chr5A_907 ATGAAGCTACCACCTACT----TAGAACGTGCCAAAGTCCTCAGTGATAA SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 AGCCGTGACCCCGTGA---------------------------------- chr5D_1_TraesCS5D01G000300 AGCCGTGACCCCGTGAGTGTGAGTGCGCGCTCTTTTGTCTATCGGTGTCG chr5D_1 AGCCGTGACCCCGTGAGTGTGAGTGCGCGCTCTTTTGTCTATCAGTGTCG chr5D_1 AGCCGTGACCCCGTGAGTGTGAGTGCGCACTCTTTTGTCTATCGGTGTCG chr5B_601 AGCCGTGACCCCGTGAGTGTGATTTTGTCC-------------------- chr5B_601 AGCCGTGACCCCGTGAGTGTGATTTTGTCC-------------------- chrUn_601 AGCCGTGACCCCGTGAGTGTGATTTTGTCC-------------------- chrUn_601 AGCCGTGACCCCGTGAGTGTGATTTTGTCC-------------------- chrUn_601 AGCCGTGACCCCGTGAGTGTGATTTTGTCC-------------------- chr5B_907 AGCCGTGACCCCGTGAGTGTGAGTGCGCACTCTTTTGTCTATCGGTGTCG chr5A_907 AGCCGTGACCCCGTGAGTGTGAGTGCGCACTCTTTTGTCTATCGGTGTCG SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 CTGCTGTTATGGTGTCTATGGATGTTTTATTTATTTACTATTAAATTGTC chr5D_1 CTGCTGTTATGGTGTCTATGGATGTTTTATTTATTTACTATTAAATTGTC chr5D_1 CTGCTGTTATGGTGTCTATGGATGTTTTACTTATTTATTATTAAATTGTC chr5B_601 -----GTCATAGTGTCTATGGATGTTTTATTTATTTATT---TAATTGTG chr5B_601 -----GTCATAGTGTCTATGGATGTTTTATTTATTTATT---TAATTGTG chrUn_601 -----GTCATAGTGTCTATGGATGTTTTATTTATTTATT---TAATTGTG chrUn_601 -----GTCATAGTGTCTATGGATGTTTTATTTATTTATT---TAATTGTG chrUn_601 -----GTCATAGTGTCTATGGATGTTTTATTTATTTATT---TAATTGTG chr5B_907 CTGCTGTTATGGTGTCTATGGATGTTTTATTTATTTATT---AAATTGTC chr5A_907 CTGCTGTTATGGTGTCTATGGATGTTTTATTTATTTATT---AAATTGTC SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GCGGTTGCATCCCATATTTTTTGGTTTCTTTCA-TTTTTGTCTCTTTGTT chr5D_1 GCGGTTGCATCCCATATTTTTTGGTTTCTTTCA-TTTTTGTCTCTTTGTT chr5D_1 GCGGTTGCATCCCATATTTTTTGGTTTCTTTCA-TTTTTGTCTCTTTGTT chr5B_601 GAGGTTGCATCCCACATTTTTTAGTTTCTTTCATTTTTTGTCTCTTTGTT chr5B_601 GAGGTTGCATCCCACATTTTTTAGTTTCTTTCATTTTTTGTCTCTTTGTT chrUn_601 GAGGTTGCATCCCACATTTTTTAGTTTCTTTCATTTTTTGTCTCTTTGTT chrUn_601 GAGGTTGCATCCCACATTTTTTAGTTTCTTTCATTTTTTGTCTCTTTGTT chrUn_601 GAGGTTGCATCCCACATTTTTTAGTTTCTTTCATTTTTTGTCTCTTTGTT chr5B_907 GCGGTTGCATCCCATATTTTTTGGTTCCTTTCA-TTTTTGTCTCTTTGTT chr5A_907 GCGGTTGCATCCCATATTTTTTGGTTCCTTTCA-TTTTTGTCTCTTTGTT SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AACAGACCGTCTTTTGTATTATGACGACATGCTTGTTCCGGTGACTCCCT chr5D_1 AACAGACCGTCTTTTGTATTATGACGACATGCTTGTTCCAGTGACTCCCT chr5D_1 AACAGACCGTCTTTTGTATTATGACGACATGCTTGTTCCAGTGACTCCCT chr5B_601 AACAGACCGTCTTTTGTATTACGACGACATGCTTGTTCCAGTGACTCCCT chr5B_601 AACAGACCGTCTTTTGTATTACGACGACATGCTTGTTCCAGTGACTCCCT chrUn_601 AACAGACCGTCTTTTGTATTACGACGACATGCTTGTTCCAGTGACTCCCT chrUn_601 AACAGACCGTCTTTTGTATTACGACGACATGCTTGTTCCAGTGACTCCCT chrUn_601 AACAGACCGTCTTTTGTATTACGACGACATGCTTGTTCCAGTGACTCCCT chr5B_907 AACAGACCGTCTTTTGTATTATGACGACATGCTTGTTCCAGTGACTCCCT chr5A_907 AACAGACCGTCTTTTGTATTATGATGACATGCTTGTTCCAGTGACTCCCT SNPs ---------------------------------------S---------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TTCTCTGTTTTTATTGTCGAGATTACTCATGTATAATGGTTTTCCATTGA chr5D_1 TTCTCTGTTTTTATTGTCGAGATTACTCATGTATAATGGTTTTCCATTGA chr5D_1 TTCTCTGTTTTTATTGTCGAGATTACTCATGTGTAATGGTTTTCCATTGA chr5B_601 TTCTCTGTTTTGATT----------------------------------- chr5B_601 TTCTCTGTTTTGATTGTCGAGTTTACTCATGTATAATGATTTTCCAATGA chrUn_601 TTCTCTGTTTTGATTCTCGAGTTTACTCATGTATAATGATTTTCCAATGA chrUn_601 TTCTCTGTTTTGATTCTCGAGTTTACTCATGTATAATGATTTTCCAATGA chrUn_601 TTCTCTGTTTTGATTCTCGAGTTTACTCATGTATAATGATTTTCCAATGA chr5B_907 TTCTCTGTTTTGATTGTCGAGTTTACTGATGTATAATGATTTTCTAGTGA chr5A_907 TTCTCTGTTTTGATTGTCGAGTTTACTGATGTATAATGATTTTCTAGTGA SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TT----TGGATACATAATAATAAAGATTCTTGC----------TTCCTTT chr5D_1 TG----TGGATACATAATAATAAAGATTCTTGC----------TTCCTTT chr5D_1 TT----TGGATACATAATAATAAAGATTCTTGC----------TTCCTTT chr5B_601 -------------------------------------------------- chr5B_601 TTTAATTGGCTATATAATAATAAGGTTTCTTGC----------TTCCTTT chrUn_601 TTTAATTGGCTATATAATAATAAGGTTTCTTGC----------TTCCTTT chrUn_601 TTTAATTGGCTATATAATAATAAGGTTTCTTGC----------TTCCTTT chrUn_601 TTTAATTGGCTATATAATAATAAGGTTTCTTGC----------TTCCTTT chr5B_907 TTTAATTGGCTATATAATAATAAAGTTTCTTGTTATGAAAATGTTCCCTT chr5A_907 TTTAATTGGCTATATAATAATAAAGTTTCTTGTTATGAAAATGTTCCCTT SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TTAATGC--------CATATTCTCC----------TATTTTATCTGCATG chr5D_1 TTAATGC--------CATATTCTCC----------TATTTTATCTGCATG chr5D_1 TTAATGC--------CATATTCTCC----------TATTTTATCTGCATG chr5B_601 -------------------------------------------------- chr5B_601 TCAATGC--------CATATTCTCCTATTTTATTTTATTTTATCTGCATG chrUn_601 TTAATGC--------CATATTCTCCTATTTTATTTTATTTTATCTGCATG chrUn_601 TTAATGC--------CATATTCTCCTATTTTATTTTATTTTATCTGCATG chrUn_601 TTAATGC--------CATATTCTCCTATTTTATTTTATTTTATCTGCATG chr5B_907 TTAATGCATACCGCGCATATTCTCC----------TATTTTATCGGCATG chr5A_907 TTAATGCATACCGCGCATATTCTCC----------TATTTTATCGGCATG SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 CAACAAGGATTGGAAACTTGAGGATGTGTGAAAACAATCTGTCTACATTC chr5D_1 CAACAAGGATTGGAAACTTGAGGATGTGTGAAAACAATCCGTCTACATTC chr5D_1 CAACAAGGATTGGAAACTTGAGGATGTGTGAAAACAATCCGTCTACATTC chr5B_601 -------------------------------------------------- chr5B_601 CAACAAGGATTGGAAACTTGAAGGTGTGTGAAAACAATCCGTCTACATTC chrUn_601 CAACAAGGATTGGAAACTTGAAGGTGTGTGAAAACAATCCGTCTACATTC chrUn_601 CAACAAGGATTGGAAACTTGAAGGTGTGTGAAAACAATCCGTCTACATTC chrUn_601 CAACAAGGATTGGAAACTTGAAGGTGTGTGAAAACAATCCGTCTACATTC chr5B_907 TAAGAAGGATTAGAATCTTTAGGATGTGTGAAAACAATCCGTCTACATTC chr5A_907 CAAGAAGGATTAGAATCTTTAGGATGTGTGAAAACAATCCGTCTACATTC SNPs ---------------------------------------S---------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AACAACAATTTAGG----CACGCATATTCTAGAAAAGTATCCGTGCAAGT chr5D_1 AACAACAATTTAGG----CACGCATATTCTAGAAAAGTATCCGTGCAAGT chr5D_1 AACAACAATTTAGG----CACGCATATTCTAGAAAAGTATCCGTGCAAGT chr5B_601 -------------------------------------------------- chr5B_601 AACAACAATTTAGGCACGCACACATATTCTAGAAAAGTATCCGTGCAAGT chrUn_601 AACAACAATTTAGGCACGCACACATATTCTAGAAAAGTATCCGTGCAAGT chrUn_601 AACAACAATTTAGGCACGCACGCATATTCTAGAAAAGTATCCGTGCAAGT chrUn_601 AACAACAATTTAGGCACGCACGCATATTCTAGAAAAGTATCCGTGCAAGT chr5B_907 AAGAACAATTTAGGCAC----ACATATTCTAGAGAAGTATCCATGTAAGT chr5A_907 AAGAACAATTTAGGCAC----ACATATTCTAGAGAAGTATCCATGTAAGT SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TGTTGCACCTTT-TTTCAGAAAATGTTGTTCATATATATCTAAAAAA--C chr5D_1 TGTTGCACCTTT-TTTCAGAAAATGTTGTTCATATATATCTAAAAAA--C chr5D_1 TGTTGCACATTT-TTTCAGAAAATGTTGTTCATATATATCTAAAAAA--- chr5B_601 -------------------------------------------------- chr5B_601 TGTTGCACATTTTTTTTAGAAAATGTTGTTCGTATATATCTAAAAAAATC chrUn_601 TGTTGCACATTTTTTTTAGAAAATGTTGTTCGTATATATCTAAAAAAATC chrUn_601 TGTTGCACATTTTTTTTAGAAAATGTTGTTCGTATATATCTAAAAAAATC chrUn_601 TGTTGCACATTTTTTTTAGAAAATGTTGTTCGTATATATCTAAAAAAATC chr5B_907 CATTGCACATTT-TTTTAGAAAA---TGTTCATATATATCTAAAAAA--C chr5A_907 CATTGCACATTT-TTTTAGAAAA---TGTTCATATATATCTAAAAAA--C SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TATCACCCTGGCATTCACATGTTTTCCTAAA---AACATCATGTAAGTTG chr5D_1 TATCACCCTGGCATTCACATGTTTTCCTAAA---AACATCATGTAAGTTG chr5D_1 TATAACCCAGGCATTCACATGTTTTCTTAAA---AACATCATGTAAGTTG chr5B_601 -------------------------------------------------- chr5B_601 TATCACCCTGTCATTCGCATGTTTTCTTAAAGGAAACATCATGTAATTTG chrUn_601 TATCACCCTGTCATTCGCATGTTTTCTTAAAGGAAACATCATGTAATTTG chrUn_601 TATCACCCTGTCATTCGCATGTTTTCTTAAAGGAAACATCATGTAATTTG chrUn_601 TATCACCCTGTCATTCGCATGTTTTCTTAAAGGAAACATCATGTAATTTG chr5B_907 TATCACCCTGTCATTCACATGTTTTCTTAAA---AACAACATGTAAGTTG chr5A_907 TATCACCCTGTCATTCACATGTTTTCTTAAA---AACAACATGTAAGTTG SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 CCTGTGCGTTGTAAAAGAAGAAATGGAAAACACCAGGAAACCACATAAAT chr5D_1 CCTGTGCGTTGTAAAAGAAGAAATGGAAAACACCAGGAAACCACATAAAT chr5D_1 CCTGTGTGTTGTAAAAGAAGAAATGGAAAACACCAGGAAACCACATAAAT chr5B_601 -------------------------------------------------- chr5B_601 TCCGTGCGTTGTAAACAAAGAAATGGAAAACACCAGGAAACCACATCAAT chrUn_601 TCCGTGCGTTGTAAACAAAGAAATGGAAAACACCAGGAAACCACATCAAT chrUn_601 TCCGTGCGTTGTAAACAAAGAAATGGAAAACACCAGGAAACCACATCAAT chrUn_601 TCCGTGCGTTGTAAACAAAGAAATGGAAAACACCAGGAAACCACATCAAT chr5B_907 TCTGTGCAGTGTAAAAGAAGAAATGGAAAACACCAGGAAACCACATTAAT chr5A_907 TCTGTGCAGTGTAAAAGAAGAAATGGAAAACACCAGGAAACCACATTAAT SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TAAACAGTTTTTCCTAGGAAATACTCGCACGCGAAAACATGGTGGCTGAG chr5D_1 TAAACAGTTTTTCCTAGGAAATACTCGCACGCGAAAACATGGTGGCTGAG chr5D_1 TAAATAGTTTTTCCTAGGAAATACTCGCAGGCGAAAACATGGTGGCTGAG chr5B_601 -------------------------------------------------- chr5B_601 TAAACCGTTTTTCCTAGGAAATACTCGCAAGCGAAAACATGGTGGCTGAG chrUn_601 TAAACCGTTTTTCCTAGGAAATACTCGCAGGCGAAAACATGGTGGCTGAG chrUn_601 TAAACCGTTTTTCCTAGGAAATACTCGCAGGCGAAAACATGGTGGCTGAG chrUn_601 TAAACCGTTTTTCCTAGGAAATACTCGCAGGCGAAAACATGGTGGCTGAG chr5B_907 TATACAATTTTTCCTAGGAAATAATCGCAGGCGAAAACATGGTGGCTGAG chr5A_907 TAATCAATTTTTCCTAGGAAATAATCGCAGGCGAAAACATGGTGGCTGAG SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AAAAAACAGGGCATCTATAATCCCCACAGCCACAGAGGCAATCGCGCTTA chr5D_1 AAAAAATAGGGCATCTATAATCCCCACAGCCACGGAGGCAATCGCGCTTA chr5D_1 AAAAGACAGGGCATCTATAATCCCCACTGCCACGGGGGCAATCGCGCTTA chr5B_601 -------------------------------------------------- chr5B_601 ACAGAATAGGGCATCTATAATCCCCACAGCCACTGAGGCAATCGCGCTTA chrUn_601 ACAGAATAGGGCATCTATAATCCCCACAGCCACTGAGGCAATCGCGCTTA chrUn_601 ACAGAATAGGGCATCTATAATCCCCACAGCCACTGAGGCAATCGCGCTTA chrUn_601 ACAGAATAGGGCATCTATAATCCCCACAGCCACTGAGGCAATCGCGCTTA chr5B_907 AAAAAACAAGGCATCTATAATCCCCACAGCCACTGAGGCAATCGCGCTTA chr5A_907 AAAAAACAAGGCATCTATAATCCCCACAGCCACTGAGGCAATCGTGCCTA SNPs ---------------------------------S---------------- forward_6704 -------------------------------------------------- reverse_8434 ---------------------------------AGAGGCAATCGCGCTTA input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 ATCTTATTATTATTTTCAAGACCGATTGTTTCGACCGGCTCAAGACCGAT chr5D_1 GTCTTATTATTATTTTCAAGACCGATGCTTTCGACCGGCTCAAGACCGAT chr5D_1 GTCTTATTATTATTTTCAAGACCGATTGTTTCGACCGGCTCAAGACCGAT chr5B_601 -------------------------------------------------- chr5B_601 GTATTATTATTATTTTCAAGTCCTAT------------------------ chrUn_601 GTATTATTATTATTTTCAAGTCCTAT------------------------ chrUn_601 GTATTATTATTATTTTCAAGTCCTAT------------------------ chrUn_601 GTATTATTATTATTTTCAAGTCCTAT------------------------ chr5B_907 GTCTTATTATTATTTTCAAGACCTAT------------------------ chr5A_907 GTCTTATTATTATTTTCAAGACCTAT------------------------ SNPs S------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 ATCT---------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GCACCGCGGTCTGGATAAACAGAATATTTCCAGTCCGGTTGGGG-A-AAA chr5D_1 GCACCGCGGTTTGGATAAACAGAATATTTCCAGTCCGGTTGGGG-A-AAA chr5D_1 GCACCGCGGTCTGGATAAACAGAATATTTCCAGTCCGGTTGGGG-AAAAA chr5B_601 -------------------------------------------------- chr5B_601 --------GTCTGGATAAACAGAATATTTCTGGTCCGGTTGGGGAA-AAA chrUn_601 --------GTCTGGATAAACAGAATATTTCCGGTCCGGTTGGGGAA-AAA chrUn_601 --------GTCTGGATAAACAGAATATTTCCGGTCCGGTTGGGGAA-AAA chrUn_601 --------GTCTGGATAAACAGAATATTTCCGGTCCGGTTGGGGAA-AAA chr5B_907 --------GTCTGGATAAACAGAATATTTCCGGTCCGGTTGGGGAA-AAA chr5A_907 --------GTCTGGATAAACAGAATATTTCCGGTCCGGTTGGGGAA-AAA SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 AACAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chr5D_1 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chr5D_1 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chr5B_601 -------------------------------------------------- chr5B_601 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chrUn_601 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chrUn_601 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chrUn_601 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chr5B_907 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chr5A_907 A-CAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA SNPs -S------------------------------------------------ forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GCCCAGTGCGAAAATTTCTTGTTACA-TTTTTTTCTCTTTTGAGAACCCG chr5D_1 GCCCAGTGCGAAAATTTCTTGTTACA-TTTTTTTCTCTTTTGAGAACCCG chr5D_1 GCCCAGTGCGAAAATTTCTTGTTACA-TTTTTTTCTCTTTTGAGAACCCG chr5B_601 -------------------------------------------------- chr5B_601 GCGCAGTACGAAAATTTCTTGTTACA-TATTTTTCTCTTTTGAGAACCCG chrUn_601 GCGCAGTACGAAAATTTCTTGTTACA-TATTTTTCTCTTTTGAGAACCGG chrUn_601 GCGCAGTACGAAAATTTCTTGTTACA-TATTTTTCTCTTTTGAGAACCCG chrUn_601 GCGCAGTACGAAAATTTCTTGTTACA-TATTTTTCTCTTTTGAGAACCGG chr5B_907 GCCCAGTGCGAAAATTTCTTGTTACCTTTTTTTTATCTTTTGAGAACCCG chr5A_907 GCCCAGTGCGAAAATTTCTTGTTACC-TTTTTTTATCTTTTGAGAACCCG SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 TTACCAAATAGGAAAACTTGGCACCTCACATTCCGTCTTGGAATATTTTC chr5D_1 TTACCAAATAGGAAAACTTGGCACCTCACATTCCGTCTTGGAATATTTTC chr5D_1 TTACCAAATAGGAAAACTTGGCACCTCACATTCCGTCTTGGAATATTTTC chr5B_601 -------------------------------------------------- chr5B_601 TTACCAAATAGGAAAACTTGGCACTTCACATTCCGTCCGGGAATATTTTC chrUn_601 TTACCAAATAGGAAAACTTGGCACTTCACATTCCGTCCGGGAATATTTTC chrUn_601 TTACCAAATAGGAAAACTTGGCACTTCACATTCCGTCCGGGAATATTTTC chrUn_601 TTACCAAATAGGAAAACTTGGCACTTCACATTCCGTCCGGGAATATTTTC chr5B_907 TTACCAAATAGGAAAACTTGGCACCTCACATTCCGTCTTGAAATATTTTC chr5A_907 TTACCAAATAGGAAAACTTGGCACCTCACATTCCGTCTTGAAATATTTTC SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GTTTCTG-----CTAAAGGAAGAGAGAACCTGGCACCACACATCCTGCCA chr5D_1 GTTTCTG-----CTAAAGGAAGAGAGAACCTGGCACCACACATCCTGCCA chr5D_1 GTTTCTG-----CTAAAGGAAGAGAGAACCTGGCACCACACATCCTGCCA chr5B_601 -------------------------------------------------- chr5B_601 GGTTCCGTGCTACTAAAGAAAGAGAGGACCACACATG---CATCCAGTCA chrUn_601 GGTTCCGTGCTACTAAAGAAAGAGAGGACCACACATG---CATCCAGTCA chrUn_601 GGTTCCGTGCTACTAAAGAAAGAGAGGACCACACATG---CATCCAGTCA chrUn_601 GGTTCCGTGCTACTAAAGAAAGAGAGGACCACACATG---CATCCAGTCA chr5B_907 GTTTCTGCC-----AAAGGAAGAGAGAACCTGGCACCACACATCCCGCCA chr5A_907 GTTTCTGCC-----AAAGGAAGAGAGAACCTGGCACCACACATCCCGCCA SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 GGGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTAT------------ chr5D_1 GGGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTAT------------ chr5D_1 GGGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTAT------------ chr5B_601 -------------------------------------------------- chr5B_601 GGGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTAT------------ chrUn_601 GGGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTAT------------ chrUn_601 GCGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTAT------------ chrUn_601 GGGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTATATATTTTCACTT chr5B_907 GGGAATATCTTCACCTTTGCAGTTTCATCAGGGAGTAT------------ chr5A_907 GGGAATATCTTCACCTTTGCAGTTTCAT-AGGGAGTAT------------ SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TTGGCATTTGAACCTGAGGTGATTTAGGTGGAACAAATTGCCTATGCCCA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CAACATGATGATTTTCTACTTCATTACACATTCGGTTAATTATGCACTAT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ATATATATATATATATATATATATATATATATATATATATATATATATCT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ACATCCGTTGTCTTGGATTTTCAGAATGTGTTAATACTTTGCTCCATTCT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GCAATACATCTCAACTTTTTCTTTTCTTTCGAACTGGGGCTCATCCAGCT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TCCATTTGATACTGTTAATGGAAACAACACCATACAAGCTTGACAAAGCT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CTATATGGACTGAAACAGGCTCCCAGGACATGGTACTCACGACTAATTAA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GTCAGAAACTGCAAACACTTGGTTTGGTTCCTCCAAAATTTGACACATCC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TTGTTCGTTTACAATAAGTCAAATACCACTATATTTATTCTTATTTACGT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TGATGATATCATTGTCACAAGTTCATCTGATGAGGCTGTGACAGGTTTGT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TAAAGGAGCTGAGTGCTGAGTTTGCCCTTAAGGATCCGGGAGACCTACAT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TTCTTTCTAGGAATTGAAGTTAAAAAACATGGAGACAGTCTTCATCTCTC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TCAGGAAAAGTATGCCACCGATCTGGTACGGAGAGTTGGGTTGCAAGGAT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AGAAGCATACACCAACACCACTATCTAGTACAGAAAAACGGTCACTTACT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GAGGGGGAACCCTTGAGTGAGGAAGATATAGTACCAGATATAGATGTTTA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GTGGGAGCACTTCGGTACATAACTTTAACAAGGCCTGATATTTCTTTTAC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TCTCAACAAAGTATGTCAGTTTCTTCATGCTCCCACCAAAACTCATTGGA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CTGCTGCAAAACGCATAGTGAGATATGTGAAAGATACTATGAATCTTAGT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CTTACCTTCAACAAGTCCTCTTCCACTCTTGTTAGTGCTTTTTCTGATTC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TGACTGGGCAGCATGTCCAGATGACAGACGCTCCACTGGTGGTTTTGCAA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TATTCTTTGGGCCAAACTTGGCATCCTAGTGTGCAAAGAAAGAAGCCATG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GTGTCAAGGTCAAGTACAGAAGTTGAGTATAAAGCACTAGCTAATGCCAC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AATAGAGATTATATGGGTTTAGTCCATGTTGAAAGAGCTTGGTGTGAAGC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ACACTCGAATTCCATGTCTATGGTGTGATAATCTCGGTGATACTTATCTA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TTTGCTAATACAGTCTTTCATTCCAGGACGAAACACATTGAGATAGACTT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CCACTTTGTTCGAGAAAGGGTAGCTAATAAGAAATTGGAGATCCGTTTTG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TGCATTCACGAGATCAGGTTGCAGATGGATTCACAAAGGAATTACCTACA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AGGAACCCTGAAGAATTCAAGCCTAATCTCAACTTAACCAAGTTGTGATT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AAGGGAGGGTGTCAAACGACACATATTGCATCGTGTGATAGCCGGCTCCA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CTCCTTGTAACCGAAGACTACAGATAGGGATAGAGATAGGTAGTTTATAT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TCTCTGTTATCTCTTGTAACTAGATATCTCTTCCTTCCTTCCCAAGTCTG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TAATCCCAACAACTTGTATGCTGTCCAAGGAGTGGCTCCCCTGGTTATAT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AACATGCAAGCGTCACCCAGAGCTGGGGTACGACGTTTCCCGCAGGGCTC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ATGCAGGTTCCATTTGATGTTGTTAATGGAAACAACATCATAAACGCACA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AAATGCAACAAAATGGTAAATTAGAAGCCTCCACATGCGGCCTACTAAAA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GGTGGTTTTGACACCTTTATGGGAGGGCTAGCAAGGTGGGTACAAGCGAG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TACGTAGTTAGCATTTTGGGCCGTGTGGATGTGGAGTTCTTGCATGTAAC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CATCTTGTAAGAATATTGTGGATGGGGTCGTTTCCCTCCTCCTATAATAC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ATGATACACACACTCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 NNNNNNGAGAATATGTTAAGATGGCTGGCGATAAACTCAAGGAGACCAAA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ACTGCCTCTCCGGAACAGGCCACTAAACTCAAGAATGAAGCTAGCACCTA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CTTAGAACGTGCCAAAGTCCTCAGTGATAAAGCCGTGACCCCGTGAGTGT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GATTTTGTCCGTCATAGTGTCTATGGATGTTTTATTTATTTATTTAATTG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TGGAGGTTGCATCCCACATTTTTTAGTTTCTTTCATTTTTTGTCTCTTTG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TTAACAGACCGTCTTTTGTATTACGACGACATGCTTGTTCCAGTGACTCC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CTTTCTCTGTTTTGATTCTCGAGTTTACTCATGTATAATGATTTTCCAAT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GATTTAATTGGCTATATAATAATAAGGTTTCTTGCTTCCTTTTTAATGCC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ATATTCTCCTATTTTATTTTATTTTATCTGCATGCAACAAGGATTGGAAA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CTTGAAGGTGTGTGAAAACAATCCGTCTACATTCAACAACAATTTAGGCA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CGCACGCATATTCTAGAAAAGTATCCGTGCAAGTTGTTGCACATTTTTTT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TAGAAAATGTTGTTCGTATATATCTAAAAAAATCTATCACCCTGTCATTC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GCATGTTTTCTTAAAGGAAACATCATGTAATTTGTCCGTGCGTTGTAAAC chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AAAGAAATGGAAAACACCAGGAAACCACATCAATTAAACCGTTTTTCCTA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GGAAATACTCGCAGGCGAAAACATGGTGGCTGAGACAGAATAGGGCATCT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 ATAATCCCCACAGCCACTGAGGCAATCGCGCTTAGTATTATTATTATTTT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CAAGTCCTATGTCTGGATAAACAGAATATTTCCGGTCCGGTTGGGGAAAA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 AACAACTGTACCGCTAAAATTACACAAGAGGGTTATGCAAAGAAGTGGTA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GCGCAGTTTCATCAGGGAGTATATATTTTCCGCTAAAATTACACAAGAGG chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 GTTCTCTTTTGAGAACCCGTTACCAAATAGGAAAACTTGGCACTTCACAT chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 TCCGTCCGGGAATATTTTCGGTTCCGTGCTACTAAAGAAAGAGAGGACCA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 -------------------------------------------------- chr5D_1_TraesCS5D01G000300 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5D_1 -------------------------------------------------- chr5B_601 -------------------------------------------------- chr5B_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 -------------------------------------------------- chrUn_601 CACATGCATCCAGTCAGCGAATATCTTCAGCTTTGCAGTTTCATCAGGGA chr5B_907 -------------------------------------------------- chr5A_907 -------------------------------------------------- SNPs -------------------------------------------------- forward_6704 -------------------------------------------------- reverse_8434 -------------------------------------------------- input_sequence_83603 ------------------------------------- chr5D_1_TraesCS5D01G000300 --------TTTCAGTTTTGGCATTTGAACCTGAGGTG chr5D_1 --------TTTCAGCTTTGGCATTTGAACCTGAGGTG chr5D_1 --------TTTCAGTTTTGGCATTTGAACCTGAGGTG chr5B_601 ------------------------------------- chr5B_601 ----ATATTTTCACTTTTGGCATTTGAACCTGAGGTG chrUn_601 ----ATATTTTCACTTTTGGCATTTGAACCTGAGGTG chrUn_601 ----ATATTTTCACTTTTGGCATTCGAACCTGAGGTG chrUn_601 GTATATATTTTCACTTTTGGCATTTGAACCTGAGGTG chr5B_907 --------TTTCAGTTTTGGCATTTGAACCTGAGGTG chr5A_907 --------TTTCAGTTTTGGCATTTGAACCTGAGGTG SNPs ------------------------------------- forward_6704 ------------------------------------- reverse_8434 -------------------------------------