>input_sequence_83587
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------------------------------------------------------------------------ATGGGGAA
CTGCGCGGCGTCGCGGCACGCCGGGGAGTCGTGGGCCGACGACGGCGAGTGGGAGGAGGCGTCGTCCACGTCCGAGGACG
GCGACCATCACCACCACAACCACCATGACGCGTCGGAGGAGCACTTGTCGGAGGTGACGATCAGGATCACCAAGAGGCAG
CTGCACGAGCTGATGGAGAGGAAGACGCCCGGCGGCCGGGGTAGCAGTACCCGGCAGCTGCTGGCGGACATCATGGACTC
CGGGGAGGTGCACCACCATGACGTGCACCGGGAGGAGCACTGGAGGCCCGCGCTGCAGAGCATTCCGGAGGCCGTCGAGT
CGTGA---------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G320200
GTTTTCTCGGTATTGTGCAGGGAATGAAGACCCAAACAGACCTGACATGGTATGTGCCATTCGAAGATGCATGCTACGCC
CGTTGGAGAAAGTAAAATGTGAGAAGCAAAGCTCGCCCATCGGCTCAGTGATCTTTTCCTGAAGAAAGATGATATATC--
-GTACGTATTTACTACGACACGTCACGGCGCATGGTAAATATCTAAGCAGGGGCATCTTATCCTTTCAGCCTTTTTCTAA
ATAATCTTATCCTTTCAGCTTTTCTAAGGTTTCTGATCCGCTCATCCTAGAATTTCACTGACTCGGCACAAGCAAGAGTC
TCCGCC-------------------CGGAAACACCTTCTTGCACGGAAGCTCGCAGGAGTGACCC-----------TCGA
GATTCGCTCCCTAGCCCATTCACACACCAGGCCGCGGCCCAAGACCAGCTCAAGCAGCAAACCTGCCCCCAAGAGCTACG
CAGCCACGTGTTTCGCCAAAAACAAAACAAAAACGCGCCTCGTCGCGTGCCCCGAGCGAGACCAGGCAATTCACTCTCGT
GTTTCCCTGACA-GAGGAAATTTGCTCGCCTTGTCCTCAATAAAAACAAGGAATTTAGTCGATTATTATATCGG-AAAAA
AG---TAAT-----------------------------------------------------------------------
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----------------------------------TCAGTGGCGTGCCTACGCAGCAGCACCGGGAGCGTACGACACCTTC
GCCCGGCTTCTAGCTCCAGGAGCCCTGCCGGCGGAGGAT----GTGAGGATGAGATCCTC------------TGACCGGC
ACGCCACGTCGGACCCGGACTTCGCCT-CCCT-------------GACATCACGGGCTAGACGACCAACGCCTAATCCGC
GCGTGCGAA--GAATGAACCGG-CGCCTCCAACTATAAATACACGCAGCAGCCCATCGTAGA------TACATTGCATCT
CGTCTATCCCATATCCATCCATCTCCATTTTCCGCCTTC--GAGGGGTCAGAAAAGGTTGAAC--GAGCTAGAGCTCGCT
AGCGGCGGGCCGGCAGCCAGGAGAGAG------GCAATCGTCAGTCGTCAGTCGGGAAGGTTATCTGATCTGATGGGGAA
CTGCGCGGCGTCGCGGCACGCCGGGGAGTCGTGGGCCGACGACGGCGAGTGGGAGGAGGCGTCGTCCACGTCCGAGGACG
GCGACCATCACCACCACAACCACCATGACGCGTCGGAGGAGCACTTGTCGGAGGTGACGATCAGGATCACCAAGAGGCAG
CTGCACGAGCTGATGGAGAGGAAGACGCCCGGCGGCCGGGGTAGCAGTACCCGGCAGCTGCTGGCGGACATCATGGACTC
CGGGGAGGTGCACCACCATGACGTGCACCGGGAGGAGCACTGGAGGCCCGCGCTGCAGAGCATTCCGGAGGCCGTCGAGT
CGTGACGACACTTGGTGGTGGCTACGTAC------GTACTTACGTACGCTGCCCCTGCCGAGCTCTGTGTGCGGAACAAA
TTAAAGTTGCCATTTCCCTCCTAGCCTCC-------TTTTTCTTTTCTCGTTCCCACAGTGTGTTCTCTCATGTCCTTGA
ATGG------------------TTATCCATGG--CCATGCATGTACAAAG-ATTGGATTTGGATAGTTCGTTCAA-----
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------------------ATTGTCACTGATGTA--AGTACTTGAGATGTACGTCTAGGGAAACACGTAAC----------
-----------------AAATTGTCGCTGATGTACATAGGATGTAGATGTAGGGAAATACGTATAAAAATTTGTCACTGA
TGTACATAGGATGTAGGTGTAGGGAAATAACTGTGAATACCCTGTTTCGCATGCCATTTTTTCTGTTATTTTTGTTTCAT
ACTGTGAGCGAGTGGTGTTTGACGGTGGAGAATGAAACTACTCATCTGCCTGATCTTTTCGTTTAAAAATGGTTTTCTCC
GAAGGTTGTTAATGGGTAGAGTTGTATGGATGCAATAATTCCATACTCATATCTATGTTTCTCACGGGCACAAAATCTTA
CTCATAGTCTATCCATTAGGCATAAAATCTTGCATGGGCCCATACCGAATGGGTATCCGTGCCAATCGGTACCTAATGGG
AAGATCGACATAACAATGAAGGGCGGTGGGTAGTTGCTAACTCCATGTGAGATGTAAACGCCAACAAGAGGTACTAGGGT
TGGCAAATTGGTGATCGGGAGGAGGATGAGGGTGGCTGGGTGGGTGATTGTTGAGAGAGTGCTAACTAGCGGGGGGTGGA
AATGGATACAGTGTGGCCGTCTAGAACTTTGGAGTTTATATGCTAGGCATCTTAGGGTTTATAAACATATGAGCCACATG
CAAGACTACTATGTAGGGTTCAGGTTTGCCCCTGGACACAAATTTGTGCATGTGTCCTACCCACAACTAGTTGGGTAGGG
TTCGGGTAAGAGCACATTGTTTCTCGACATCCTTAAAATGATCCAACTTTT
>chr3A_1
GTTTTCTCGGTGTTTTGCAGGGAATGATGACCCGAGATGATCTGAAGATGCATAGCATCG--GAAGATGCATGCTGCACT
CGTTGGACAAAGTAAAATCTGACAAGTAAAGCTTGCTCATCAACTCAGTAAACTTTTTCTTGAAAGAAAGCTTATCCAGC
AGTATATATTTACCACGACACGTCACCACACATGGTAATTTTCTAAGCAGGGACATCTTATCCTTTCAGCTTTTTGAAGC
------------------------------TTCTGATCCATTCAGCCTAGAATTTTACTGACCTCATCTATACTATCTGA
TCCGCGGTTTAAGCACGGCAGTCGTCGGCAATACCTTCTTACACGAAAGCTCGCGGGAGTGGCCGCTCGAT--------A
GATTCGCCTCCGAGCCCATTCACACACCAGGCAGCGGCCCAAGACCAGCTGAAGCAGCAACCTG--CCCCAAGAGCTACG
CAGTCGCGTGTTTCGCCAAAAACAAAACAAAAACGCGGCTCGTCGCGTGCCCCGAGCGAGACCAGGCAATTCACTCTCGT
GTTTCCC---------GAAATTTGCTCGCCTTGTGTCCT---AAAAAAAACAATTTATTCGATTATCCA-----CAAAGA
AGTACTAAT-----------------------------------------------------------------------
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----------------------------------TTAGTGGCGTGCCTACGCAGCCGCACCGGGAGTCTACGACACTGTC
GCCCGGCTTCTAGCTCCAGGAGCCCTGCCGGCGGAGGAT----GTCAGGATGAGATCCTCTGACCGGGTTCATGACCGGC
ACGCCACGTCGGACCCGGACTTCGCCT-CCCTCTCCCGTGCCTCTGACATCACGGGCTAGACGACCAACGCCTAATCCGC
GCGTGCGGA--GAATGACCCAG-CGCCTCCAACTATAAATACACACAGCAGCCTATCTTCGT------CACATTGCATCT
TGTCTACCC-------GTTCATCTCGATTTCTTGCCTGC--GAGCGATCAGAAAAAGTTGAAC--GAGCTAGAGCTCGCT
AGCGGCGGTCCGGCAGCCAGGAGAGAG------GCAGTCGTCAGTCG-------GGAGGGCTATCTCATCTGATGGGGAA
CTGCGCGGCGTCGCGGCACGCTGGGGAGTCGTGGGCGGACGACGGCGAGTGGGAGGGGGCGTCGTCCACGTCGGAAGACG
ACCACCACCACCGCCACCACCACCATGACGCGTCGGAGGAGCACTTGTCGGAGGTGACGATCAGGATCACCAAGAGGCAG
CTGCACGAGCTGATGGGGAGGAAGACGCCCGGCGGCCGGGGTAGCAGCACTCGGCAGCTGCTGGCGGATATCATGGACTC
CGGGGAGGTGCACCACCATGACGTGCACCGGGAGGAGCACTGGAAGCCCGCGCTACGGAGCATTCCGGAGGCCGTCGAGT
CATGACGAGACTTGGTGGTGGCTACGTAC------GTACTTACGTACGCTGCA-CTGCCGAGCTCTC--TGCGG-ACAGA
TTAAAGTTGCCATTTCCCTCCTAGCCTCTTTTCTCTTTTCTCTTTTCTCGTTCCCACGGTGTGTTTC--CATGTCCTTGA
ATGGGAGTACTCCCTTGAATGGTTGTCCATGA--CCATGCATGTACAAAG-ATTGGATTTGGATAGTTCGTTCAATTTCT
AGGGAAATACGTATAAAAAATAGTCACTGATGTACATAGGATGTAGGTGTAGGGAAATAACTGTGAATACCCTATTTCGC
ATGCCATTTTTTTCTATTATTTTTGTTTCATACTACTATGAGGGAGTGGTGTTTGACGGTGGAGAATGAAACTACTCACC
TGCCTGATCTTTTCGTTTAAAAATGGTTTCCTCCGAACTCCGAAGGATGTCAATGGGTAGAGTTGTATGGATGCAATAAT
TCCATACTCATATCTATGTTTCTCACGGGCACAAAATCTTACTCATAGTCTACATAAAATCTTGCCTGGGCCCATACCGA
ATGGGTATCCGTGCCAATCGATACCCAATGGGAAGATCGACATAACAATGAAGGGCGGTGGATAGTTGCTAGCTCCATGT
GAGATGTAAACGCCAACAAGAGGTGCTAGGGTTGGCAAATTGGTGATCGGGAGGAGGATGAGGGCGGGGGATTGTTGAGG
AAGTGCTAACTAGCGGGGGTTGAAGTGGATACAGTCTGGCCGTCTAGAACTTTGGAGTTTATATGCTAGGTATTTTAGCG
TTTATATGAGTCACATGCAAGACTACTCTGTAGGGTTCGGGTTTGCCCCTGGACACAAATTTGTGCCTATGTCGTACCCA
CAACTAGTTGGGGGTTCGGGTAAGAGCAAATTGTTTCTCGACAACCTTGAAATGATTCCATTTTTTTAAATGTTCAAGGA
TTTGAATTTTTTCACAGATTTTCAAGAGAAGTCCAGTAAAAAGTTTGAGAAATTGAAATAAATTCACAAAATGGAGAAAA
ATTTCATGAAATAGATATTTGTAAAATTTTGAAAAGTTCATGCATTTGATAAAAAGTAAAAACAAAAATAAAAAGGTAAA
AAAGATAAATAAAAAATCCTAGAATAAAACAAATCAAAACCCAGTTTTAAAAAACACGAACAAACCTTGAGGGTTGGAGT
CCGAATCGCCCGTGGCACACATTTTTTGAAGACTAAAAAGAAAGAGAAAAAATGGTGTAGGTGCCAAATAGGGTTTGGAT
ATACCACATACGCCGGTCCGTGTACAAGTAGGAAGTACAGAGGCCAAGAATCAGGGGTGCCCTTATTTATCTCTTTTCAA
TAATCCTAGACATACGAGCTTGTTACACGCAGTTTACGGGGCCCTTCATTAAATTTCTTTGCCCCCCCCCCCTCCCCCGG
GGCGGCCCGCCTCACTCCCTTCTTTTCAATCCCACTTTGCCATGTCAGCATGTAACTAAATTCAGCCTGTAAGTGCCTCT
ACGTCTAGCATTACTGATCTCTTTTAGTGAGATGGAGGGAAGCCTGGAGTTAAGCTGGACGCTACTACATAGACATCTTC
CTTTTTCTTCTCTAACTATGTTAAGTGTTCCTTTTTTCAAGCGAGGCCCAAACGAGTGGGAGGGCACAACCTCATTTTTT
CACATTGTTATTTTCATTTTTTATTTCGTCTTTTACTTTCGTTTATGCATCCAAATATTTTAAATAAATATATTAGAAGA
ACATTTTACATCAAACATTTTAAAAAAATGTTAACCAAACATTTGAAAAATGTTAAATGTGTGAACAAATGTTTCTAATG
TATACAAAAAATATATAATGTGTGTGAAAAAAGTTGGACATGTTTTTATAAATTTAATCCAAGCATTTAAAAAAAGTTAC
TCCCTCCTTCCATCTATATAGGGTCTAATACGTTTTTCGAGGCTAACTTTGACCAAATGTTAGAGCAATAATATATGACA
TGCAACTTACACAAAGCACAATATCAAATTCGTATGTGAAAGGAGTTTTCAATGATATAATTTTCACATTATGCATATCA
TGTATTATTAATCTTGTCAATAGTCAAAGGATGTCTTAAAAAACGCACTAGGCCCTATATAGATGGAAGGAGTGAGTAAA
ACGTAATGAGCCGTTCATACGCAGAGGGCCACGACCACTGTGAATCTGCAATCAAAACTTCTATCTCGCCCGTCAAAGTG
ATTCTGTCAGCGCCCAGTTCATACAGACCATCACGTGTGCATGTTTTTTTTAATGATAATACGTGTCTTATTCATATTAT
AATAATCAAAATATAAATCACGTAAGGACCGACATGACAAAACTGAAAAAATAGCAGAACATCTCTGAGGTTGACACCAA
CGCCCGTCAGCTGCATCCGGCACCACCACAGTAGCCACCGAAGAAAAGAATGACAGATCATTTCCTTACCCGAGCTCGAC
GCAACACCATCGCTGATATGCAGCTTTGCGGACCTCCAAGGTGGCTCACCAAAAGTGAAGCCGTTGCCGTTGAACGAATC
AGACCGGGGCAACACACCGGACACGCCATCGAACTCCGGATCTGGCACCCCACCACGACTATGACGCCGAAGGAGGAAAC
CATACCTGACATCCACGAACCACGAACCCAGAACACATTCCATCTTCCAGATGTCGTCGATGCAAACCACAATCTGCATC
CGCTCCTGGACTACCTCCCAAGCTTCGTGCCGACGCTGAATCAAACGGCATCGCAATGGCGGAGCCCGAGGACACAAATC
CATCACGAGGATGTCATCGCCGCTACGTCGTCCTTACGTGAACAGACTTATTCCTAAATTCATCCCCAACCATAGAACCG
ATGGCCTCGTCAAAGAAGGATCCGGAGAATTTTTATTCAGCATTGTCACCATCGCCGCTGAAGCCAAGATGATGAACAAT
CTAAAAAACTAGACTATGAAGGAGTAAAAATGATCCACGTGTGTGAATCCGGTGATCCCCTCACCACCAACGACTGAGGT
CGCCGGTGGAGGAGAGCCGCCGTAGGATGGCACTAGAAGATTGACCTAATTACGACGGGTAGCTAGGGTTCCAGCCGCCA
GGACAAGAGAAAAACGATCTATTGGCCAGTGATTACCTCGTCACCGCATCACGTGTGCACGTTGAATGCCTATTTTTGCA
GGGAATGATGGCCGGAGCAGAGCTGGCATGGTATGTGCCATTCGAAGGTGCATGCTGCACTCGTTGGAGAAAGTAAAATG
TGAGAAGTAAAGCTCGTGCATCAGCTCAGTAGAACTTTTTTTTCTTAAATCGAAGACCCTAGAACAATAGTTCTACGGTA
ATTTTCATTTAAAATAAAGCAAAGTTATGTAAAAAAATAAAATAAACAATAGGACCATCTAACCAATACCAGCTCTAGGT
ATATCCATGAATAATTAAGCTAGGTTGTCTGTAATCCAGCCCTTGGAAGCCTCTTTGTGTTTTTCTTTGGTCCTCACAAC
TATCATCTTAAGGTCATTTTTGAGTAAACTTCTCCAAGCTTGCAGAGATAGAGGTTGAGCTTTGAAAATCTTGGAGTTCC
TCTGCATCCAAATATGCCAGCAGTCCATGGTGATTATGCTCATTGCAAATTGCTTGGGTAGGTGAGTTAGCAGAAAGGTG
ATCTATTTAGTATGTATTTACTACGACACGTCACCGCGCATGGTAAATATCGTCTAAGCAAGGGCATCTTATCCTTTCAG
TTTTTCTAAGCTTCTGGCTAATCCATTCATCCTAGACTTGTACTGACTTAAGTATCTATAGAAATAGCCGCGGATTAAGC
ACGGCAGTAGGCATACAGGAAACACCTTCTCGCACGAAAGCTCGCAGGAGTGGCCCCCTGAAGCCGCTCGAGATTCGCTC
CCTAGCCCATTCACACACCAGGCCGCGGCCCAAGACCAGCTCAAGCAGCAACCAGCCAGCCAGCCGACCCGCGTGTTTCG
CCAAAAACAAAACAAAAACGCGGCTTGCCGCGTGCCCCGAGCGAGACCAGGCAATTCACTCTCGTGTTTCCCTGACAATA
GGAAATTTGCTCGCCTTGCACGGGACGGAGGGAGTAATACAGTCGCGTGCCTACGCAGCAGCACCGGGAGCCTACCACAC
CTTCGCCCAGCTTCTAGCTCCAGGACTGCCGGCCAGCGGGCGATGGATGTCAGGATGAGATCCTCTGACCAGGTTCATGA
CTGGCACGCCACGTCGGACCCGGACTTCGCCTCCTCCCGTCCCTCTGACATCAAGGGCTAGACAACCAACGCCTAATCAG
CGCGTGCGGAGAATGACCCAGCGCCTCCAACTATAAATACACACAGCTGCCCATCGTAGATACATGGCATCTTATTTATC
CATCCATCTCCATTTCTTGCCTGCGAGAGGGATCAGAAAAAGTTGAACGAGCTAGAGCTCGCTAGCGGCGGACCGGCAGC
CAGGCCCACGAAAAAGGCACTCGTCAGTCGGGAAGGTTATCTGTGGGGAACTGCGCGGCGTCGCGGCACGCCGGTGAGTC
GTGGGCGGACGACGGCGAGTGGGAGGAGGCGTCGTCCACGTACGAGGACGGCGACCACCACCACCATCACCATGACGCGT
CGGAGGAGCACCTATCGGAGGTGACGATCAGGATCACCAGGAGGCAGCTGCACGAGCTGATGGAGAGGAAGACGCCCGGC
GGCCGGGGTAGCAGCACCCGGCAGCTGCTGGCGGACATCATGGACTCCGGGGAGGTGCACCACCATGACGTGCACCGGGA
GGAGCACTGGAGGCCCGCGCTGCAGAGCATTCCGGAGGCCGTCGAGTCGTGACGAGACTTGGTGGTGGCTACGTACGTAC
TTACTTACGTATGCTGCCCCTGCCGGGCTGTGTGTGCGAAAGAGCGAAACAGATTAAAGTTGCCATTTCCCTCCTAGCCT
CTTTTCCCTTTTCTCGTTCCCACGGTGTGTTTCCATGTCCTTGAATGGTTGTCCATGATCATGCATTTACAAATATTGGA
TTTGGATAGTTCGTTCAATTTGTCACTGATGTAGTAGTACATAAGATATACGTCTAGGGAAATACGTAACAAATTGTCAC
TGATGACCCTCAAAAAAAAA--------------------------------------------------TTGTCACTGA
TGTACATAGGGTGTAGGTGTAGGGAAATAACTGTGAATACCCTATTTCGCATGCCAATTTTTTGTG--------------
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>chr3B_285
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-----------------------------------------------TAGAATTTCACTGACTCGGCACAAGCAAGAGTC
TCCGCC-------------------CGGAAATACCTTCTTGCACGGAAGCTCGCAGGAGTGGCCC-----------TAGA
GATTCGCTCCCTAGCCCATTCACACACCAGGCCGCGGCCCAAGACCAGCTCAACCAGCAACCTG--CCCCAAGATCTACC
CAGCCGCGTGTTTCGCCAAAAACTAAACAAAAACGCGCCTCGTCGCGTGCCCTGAGC-AGACCAGGCAATTCACTCTCGT
GTTTCTCTGACG-GAGGAAATTTGCTCGCCTTGTCCTCAATAAAAACAAGGAATTTAGTCGATTATTATATCGGAAAAAA
AG---TAAT-----------------------------------------------------------------------
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----------------------------------TCAGTGGCGTGCCTACGCAGCAGCACTGGGAGCGTACGACACCTTC
GCCCGGCTTCTAGCTCCAGGAGCCCTGCCGGCGGAAGATGTTCGTCAGGATGAGATCCTCTGACCAGGTTCATGACCGGC
ACGCCACGTCGGACCCGGACTTCGCCT-CC---TCCCGTCCCTCTGACATCACGGGCTAGACGACCAACGCCTAATCCGC
GCGTGCGAA--GAATGAACCAG-CGTCTCCAACTATAAATACACACAGCAGCCTATCTTCGT------CACATTGCATCT
TGTTTATCC-------ATTCATTTCGATTTCTTGCCTGC--GAGGGATCAGAAAAAGTTGAAC--GAGCTAGAGCTCGCT
AGCGGCGGGCCGGCAGCCAGGAGAGAG------GCAGTCGTCAGTCG-------GGAAGCTTATCTGATCTGATGGGGAA
CTGCGCGGCGTCGCGGCACGCCGGGGAGTCGTGGGCCGACGACGGCGACTGGGAGGAGGCGTCGTCCACGTCGGAAGACG
ACCGCCACCGACGCCAC---------GACGGGTCGGAGGAGCACCTGTCGGAGGTGACGATCAGGATCACCAAGAGGCAG
CTGCACGAGCTGATGGAGAGGAAGACGCCCGGCGGGCGGGGTAGCAGCACCCGGCAGCTGCTGGCAGACATCATGGACTC
CGGGGAGGTGCACCACCATGACGTGCACCGGGAGGAGCACTGGAGGCCCGCGCTGCAGAGCATTCCGGAGGCCGTCGAGT
CGTGACGAGACTTGGTGGTGGCTACGTACGTACTAGTACTTACGTACGCTGCA-CTGCCGAGCTCTC--TGCGAAACAGA
TTAAAGTTGCCATTTCCCTCCTAGCCTCTTTTCTC-------TTTTCTCGTTCCCACGGTGTGTTTC--CATGTCCTTGA
ATGG------------------TTATCCATGA--CCATGCATGTACAAAG-ATTGGATTTGGATAGTTCGTTCAC-----
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------------------ATTGTCACTGATGTA---GTGCATAAGATGTACGTGTAGCGAAATACGTAAC----------
-----------------AAA--------------------------------------------------TTGTCACTGA
TGTACATACGATGTAGGTGTAGGGAAATAACTGTGAATACCCTATTTCGCATTCCATTTT--------------------
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>chr3D_325
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--------------------------GGAAACACCTTCTTGCACGAAAGCTCTCAGGAGTGGCCCCTTGAAGCCGCTCGA
GATTCGCTCCCTAGCCCATTCACACACCAGGCCGCGGCCCAAGACCAGCTCAAGCAGCAACCTG--CCCCAAGAGCTACC
CAGCCGCGTGTTTCGCCAAAAACAAAACAAAAACGCGGCTCGTCGCGTGCCCCGGGCGAGACCAGGCAATTCACTCTCGT
GTTTCCCTGAGAACAGGAAATTTGCTCGCCTTGTGTCCT---AAAAAAAT-TATTTAATTGATTATCAA-----AAAAAG
TAACTTAGAGCAAACTCCAACCGGCCGACCCATTTCGTCTGCCCACATCCGTTTCGGTCGGCGCGGATAAAAACAATGGT
CCAACGAGCCGACCCATTCCTAAATCCTATCCGCTTGACATCCGCGCGTACCTATTTTCGGCCCAAATTTGCACCTGAAA
TGCGTCGGCGAAGACGCGAAACGGACACGTCGTGCGCCCGCTCGTTGTCCGCCGCATCCCCACATGATGGCCGTTCAAAT
GCCTCCCGCGTCATAATTAATGGCGACCATAGACCGCAGGCCCACACGTCAGCGACGACGAGCGTCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTAACCGCGAGCGTGTGCGGGGGAGGGGGGGGGGGGCTCGTCCTCTTCCAGCCTCCCGTCCCCATCTAGCCACCCTAC
CGCTCCCCCGCCGACGACAAACCCTAGCCTAGCTCGCACCACCATGGGCTTCTTCGCCGGCAAACAAGGGCAAGTCCCCC
GCCTCATCCTCTTCGCGCGCAACCCACCACCGCCGCCATCAGCCCGCCCGGCGAGGCAACGGATAGGCGTCCCAGTGCAC
CAGGCGAGGTGGCATTGGGAGCACCACATCCCCGGCCCTCCCGTACCCCGACGTTACGCTGCCACACGATTGGCATTTGG
ATCCAGATAGGATCCCAGTGCCGGTGGCGCCGCGGACTGGCCGGGCGCACGCGGAGGAGGTGCATCGCCGACGGGATCTG
CTTACGCCAGCGCAGCGTTTCAAAATATTTGCGCTTTTTATTTTATTTTTCGCGTGTGAACTATAAAAATGAATCGACCC
TGCGTTGGGTGTAAGCGTCGACCCAGACGTGAAAGTAGATATGGGTGTCCACTGGGACTAAACGAACAAAAAATAGAATC
ACTGTCTGTTTACGTCGGCGCGTTGAAATTACTGTTAGTGGCGTGCCTACGCAGCAGCACCGGGAGCGTACGACACCTTC
CCCCGGCTTCTAGCTCCAGGAGCCCTGACGGCGGAGGAT----GTCAGGATGAGATCCTCTGACCAGGTTCATGACCGGC
ACGCCACGTGGGACCCGGACTTCGCCTCCC---TCCCGTCCCTCTGACATCACGGGCTAGACGACCAACGCCTAATCCGC
GCGTGCGAATCGAATGAACCAG-CGCCTCCAACTATAAAAACACACGGGAGCCCATCTTGGT------CACATTGCATCT
TGTCTATCC-------ATTCGTCTCGATTTCTTGCCTGCGAGAGGGACCAGAAATAGTTGAAC--GAGCTAGAGCTCGCT
AGCGGCGGTCCGTCAGCCAGGCCCAGAGAAAAAGCACTCGTCAGCC--------GGGAAGGTT----ATCTGATGGGGAA
CTGCGCGCCATCGCGGCACGCCGGGGAGTCGTGGGCCGACGACGGCGAGTGGGAGGAGGCGTCGTCCACGTCCGAGGACG
GCGACCACCACCACGCA------------------------------TCGGAGGTGACGATCAGGATCACCAAGAGGCAG
CTGCACGAGCTCATGGAGAGGAAGACGCCCGGCGGCCGGGGTAGCAGCACCCGGCAGCTGCTGGCGGACATCATGGACTC
CGGGGAGGTGCACCACCATGACGTGCACCGGGAGGAGCACTGGAGGCCCGCGCTGCAGAGCATTCCGGAGGCCGTCGAGT
CGTGACGAGACTTGGTGGTGGCTACGTATGTAC--GTACTTACGTACGCTGCCCCTGCCGAGCTCTC--TGCGAAACAAA
TTAAAGTTGCCATTTCCCTCCTAGCCTCTTTTCTC-------TTTTCTCGTTCCCACGGTACGTTTC--CATGTCCTTGA
ATGG------------------ATGGCCATGCGTCCATGCATATACAAAG-ATTGGATTTGGATAGTTCGTTCAA-----
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------------------TTTGTCTCTGATGTA----TACATAAGATGTACGTCTAGGGAAATACGTAT-----------
--------------AAAAAA--------------------------------------------------TTATCACTGA
TGTACATAGGATGTAGTTGTAGGGAAATA---------------------------------------------------
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>chr3B_331
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--------------------------------ACCTTCTTACACGAAAGCTCGCAGGAGTGGCCGCTCGAT--------A
GATTCGCCTCGGAGCCCATTCACACACCAGGCCGCGGCCCAAGACCAGCTCAACGAACAACCTG--CCCCAAGAGCTA--
--GCCGCGTGTTTAGCCAAAAACAAAACAAAAACGCGCCTCGTCGCGTGCCCCGAGCGAGACCAGGCAATTCACTCTCGT
GTTTCCCTGAGATGAGGAAATTTGCTCGCCTTGTGTCCT---AAAATATT-AATTTATTCGATTATCCA-----AAAAAA
GG---TAAT-----------------------------------------------------------------------
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----------------------------------TTAGTGGCGTGCCTACGCAGCAGCACCGAGAGCGTACGACACCTTC
GCCCAGCTTCTAGCTCCAGAAGCCCTGTCGACGGAGGAT----GTCAGGATGAGATCCTCTGACCAGGTTCATGACCGGC
ACGCCACGCCGGACCCGGACTTCGCCTC-C---TCCCGTCCCTCTGACATCACGGGCTAGACGACCAACGCCTAATCCGC
GCGTGCTAA--GAATGAAACAGCCGCCTCCAACTATAAATACACACAGCAGCCCAACGTAGATAGGAGTACATTGCATCT
CGTCTATCC-------ATCCATCTCCATTTCTTGCTTGCGAGACGGATCAGAAAAAGTTGAAGGAGAGCTAGAGCTCGCG
AGCGGG--------AGCAAGGAGGAAG------GCAGTCGTCGGTCG-------GGGGAGGTT----TTCTGATGGGGAA
CTGCGCGGCGTCGCGGCACGCCGGGGAGTCGTGGGCCGACGACGGCGAGTGGGAGGAGGCGTCGTCCACGTCGGATGACG
ACCACCACCGCCGCCACCACCATCACGACGGGTCGGAGGAGCACCTGTCGGAGGTGACGATCAGGATCACCAAGAGGCAG
CTGCACGAGCTGATGGAAAGGAAGACGCCCGGCGGCCGGCGTAGCAGCACCCGGCAGCTGCTGGCAGACATCATGGACTC
CGGGGAGGTGCACCACCATGACGTGCACCAGGAAGAGCACTGGAGGCCCGCGCTGCGGAGCATTCCGGAGGCCGTCGAGT
CGTGACAAGACTTGGTGGTGGCTACGTAC------AAACTTACGTACGCTGCA-CTGCCGAGCTCTC--TGGGAAACAGA
TTAAAGTTGCCATTTCCTTCCTAGCCTCTTTTCTC-------TTTTCTCGTTCCCACGGTGTGTTTC--CATGTCCTTGA
ATGG------------------TTGTCCATGA--CCATGCATGTACAAAGAATTGGATTTGGATAGTTCGTTCAC-----
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------------------ATTGTCACTGATGC---AGCACATAAGATGTACGTCTAGTGAAATACGTAT-----------
--------------AGAAAA--------------------------------------------------TTGCCACTGG
TGTACAAAGATGTA------------------------------------------------------------------
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>SNPs
-----------S--S------------S-----S-SSS--S----SSSS-S--SSSSSSSSS-------------S-S-S
-------S----------S---S---S------S--S----SS------S-S-----S--SS-S-S-S-SSS---SSS--
----SS-------S------------SS-S--------S-S-----------S-----------------S----SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS---S-----------------------------------
-------------------------------------------------------------S------------------
------------------------------------------------------------S-SSSS--------------
-----S--------------------------------------------------------------------------
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---------------------------------------------S----------------------------------
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--------------------S-----------------------S-----------------------------------
---------SSSSSSS--------------SSS----S--------S--------S------------------------
------------------------------------S----------SSSSSSS--------------------------
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-------S---------S--------------------------------------------------------------
-----------------------------------------------S--------------------------------
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--------S---------------------------------------------------------SSS-----------
----------------------------S----------S-----------------S-------SSSS-----------
-------------------------------S------------------------------------------------
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----------------------------------------S-S-------------------S-----------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------------S------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2291
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-------------------------------AGGCAATCGTCAGTCGTCAG-----------------------------
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>reverse_8247
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------ATTGGTGATCGGGAGGAGGA------------------------------------------------------
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---------------------------------------------------
