>input_sequence_83580
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-------------------------------------------------------------------ATGTGCTTCGAGT
TCAGCTCGTGCTTCGGCGGCGGCAGGGACGACTACGGCGGCGAGCGGTCCAACCGCAACCGCAACGAGGCCGGCGAGC--
----------------GGAACAACAACAGGAACGGCTACTACGGCGGCGCCGACCACAAGGCGCCGCAGACGACCTACCA
GCAGCCGCCCGCCGCAGTCGACGAGGC-----------------------------------------------------
----------------------------CGACATCGAGGCGCCCAAGCTTCCGGCGTGGCACAACAAGGTTAGCGACCAC
GCCTACACGGCGCGCCTCCAAGAAGCTGCTGCTGATCACAGGAACAACGCCGCCACGGATTACCACCATTACCCAACTAC
CGCTCTCGGCAGGTACTAG-------------------------------------------------------------
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>chr3A_1_TraesCS3A01G052400
CTTCACGGATAGATGAGGTTCTTGTTGAATGTCAAAAGTTAACAGAAATTATCCAGCCACCACAATCCAAATATATACTG
GAGCTTTGAGAGTCTGCTTTGGAGACGCCTTAAACTTATTTAACCGCGAGAGAGGGAGCACGGGCAACAGTCGGTCTTGC
CGTTTACTCCCTTCATTTTTTACTTCCTTCGTTTCTTTTTAGTCTGCATATAAGATTTGATCAAAGTTAAACTTTGTTGG
AAAAAAAATATCAACATCTACAATACTAAAACTATATGGTATGAAAATTAGTTTCATGATGCTTCTAACAATATTGATTT
TATATTGTGAATCTTAATATTTTTTTTATAAACTTAATCAAAGTTGATAAAGTTTGACCCTGACCAAATTTTATATACAG
ACTAAAAAGAAACGAAGAGAGTAAAAGACAACACGTCGAGGACAGGACAGAGCCCCAACAAGATTGCACCACCCTGCAGC
CACGCATTGCCAAACCCAAAAGGTACTGCGGGCGGCATCTTCGCCAGCCTCCGAAATCGAGCGATGCTGTCCGCGGCGCG
GCACCGCCCGCCACGAGGCGTCACTCTCGCAGACCACCGAACTACCCTATCCCCCAAGCC-------------------C
TCTCCTCCCTCTGATTCCCCGATAACTTGGACTGGGGGACGACCCCGACCACCCCGCCATCGTGCCCAAGCCGAAACTGA
TCGATCGGCGACGCCGTTTCGCTTCAGCTGGAGCTGGACGAACCTCATCCATCTGGACCTCAGTTGCAAAAACAACTGGG
TGTGGCTGA-----------------------------------------------------------------------
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-----------TGATAGAACCTGTGTTTGCGCGTCAAGTGTGTGAACCGGAGTCGCATC------TCCTAGGCGTGCGAC
ACGAGCTAGCTCGTCTCGTATAAATATACCCGTACCACGCTGAGCATCCAGCACCACCCACTAGTCCAGTAATCCAGCCA
CCTAAGCCTCCTCTTCCTCCTCAGTGCAGTTCCAGGGCTAATCCAAAAACACAGCCTACCAGCAAAAATGTGCTTCGAGT
TCAGCTCGTGCTTCGGCGGCGGCAGGGACGACTACGGCGGCGAGCGGTCCAACCGCAACCGCAACGAGGCCGGCGAGC--
----------------GGAACAACAACAGGAACGGCTACTACGGCGGCGCCGACCACAAGGCGCCGCAGACGACCTACCA
GCAGCCGCCCGCCGCAGTCGACGAGGC-----------------------------------------------------
----------------------------CGACATCGAGGCGCCCAAGCTTCCGGCGTGGCACAACAAGGTTAGCGACCAC
GCCTACACGGCGCGCCTCCAAGAAGCTGCTGCTGATCACAGGAACAACGCCGCCACGGATTACCACCATTACCCAACTAC
CGCTCTCGGCAGGTACTAGCTAGGAGTACTT-GTTAAAACTAGCTAGCATGAACAGTCCATCAATCTCTCCCTAGCCCGG
AACATTGGCTGTTGCTACTGTCAGGTAGCTCTGTTTTTCCTCTGTTTTTT-CCTTTCTCTTTGGATTTTCATCAGCGTTC
TCACATGCTGAGGCCCAACGGCACCTGGAAATAGTGTGTGAGATCCAGGATCAAGGGGGTGTGGATTTTGAACAGAGCCT
CCTCGAATATGTCGATGGATGTGCGGCACAAGTTGTAGCTCTAGCTCCAGGAAGCTTTTTATGAGTCTTCTCGTCTAGTT
GC---TTGCTTGTACTTTGGTTGTGACCGCTTTCTTCTTGTCTGATATAATCAAGCAAAAGAAAGCATTGTGAGATGTCA
GATGACT-CCCATTTCTTGTCTTTCTATGTGCATATCTGTTTTTTTAGAACGAAGACGCTAGGAGCGTCCGGTTT-----
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--------------------------------TAAATTAATAAAGCCCTCATCGGAACAGGCAGAGTGTCAAGTCGCACG
GTCAAACATTACAGGGACAGGGACAAAAGCCATGGGTATATCTACTTAATGAAGCATAAGTCTGAAACATTTGAAAAGTT
CAAAGAATTTCAGAG-----------------------------------------------------------------
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--------------------------------------------------------------------------TGAAAT
TGAAAATCATCGTAACAAGAAAATAAAGTTTCTACGATCTGATCGTGGAGGAGAATATTTGAGTTACGAGTTTTGTCTAC
ATTTGAAATAATGCGGAATAGTTTCGCAACTCACGTCACCCGAAACACCACAGCGTAATGGTGTGTCCGAACGTTGTAAT
CG------------------------------------------------------------------------------
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--------------TACTTTACTAGATATGGTGCGATTTATGATGTCTCTTACAGATTTACCGCTATCATTTTGGGGTCA
TACTTTAGAGACGGTCGCATTCACGTTAAATAGGGCACCATCGAAATCCGTGGAGACGACACCTTATGAACTGTGGTTTG
GCAAGAAACCAAAATTGTCGTTTCTGAAAGTTTGGGGCTGCGATGCTTATGTGAAAAAGCTTCAACCTGATAAGCTCGAA
CCCATATCGGAGA
>chr3B_546
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-----------------------------------------------------------------GCTGTCCGCGGCGCG
GCACCGCCCGCCACGTGGCGTCGTTCTCGCAGGCC-----ACCACCCTATCCCCAAAGGCCAAAGCACTCGGCTCGGCTC
TCTGCTTCCTCTGATTCCCCGATGACTTGGACTGGGGGAGCACGACCCGACCTCCG-CACCGTGCCCATGCTGAAACTGA
TCGATCAGCAACGCGGGTTCGCTTCAGCTGGAGTTGGATGAACATCATCCATCCGGACCTAAGCAGCAACAACAACTGGG
GGGCGGCCGGGGCGGCCCCCATCGAGCTCCTCTCCTCCCCCCTCCCCCGTGCTCCTCCCCCCCCGCCGCCGCCGGCGGAG
CCTCCGGATCTGGCAAGGCGGGCTGGCGGCGGCGGGCCCTTCCTTCCCCCGCGCGCGCTCCCCCTGCCCCGGGGGCAGGG
CTGGCGGCGGGTGCCCTTCGGCCAGCGGCGGCCCGGCGGCCTGGTGGCGGCTGGCGGCGGCCCGGCGCGGTGGTGGCGCC
GTCCTTTGGCGGCGGGGCGGCTTGGTGGCGCTGGTTGGCCGGCGGCGCGCCCGGCCCAGATCTGGGCCCTCGGGGCTCCA
TCTGGGTCCTTGCGGGCCGGCCCCCGGGCGTGTCCTCGTTGTCTGCGGCGTGGTGAGGAGGAGGAGCAGCTCGGTCTTGG
GGCGGCGGCTCCGACGGTGTGCCGGCAGCAGCGCGAAGGCGGGAGCTTTACGAGCCCACGAGGGCTCGGTCGGGCCTGGT
GTGCTCCTGCTATTGCGTCCGGACGGCTACCGTCGCTGACGGTGGAGGTGGGGCCCTCCCGCGTGCCGACGGGTTGTTGC
CCTAGTCCCGGCTTTGATTCCTTGCCGTGTTGTCCTCACTTCGCGGTGCCGTGGTGAGACGGCATGGGGGCCTCGTGACC
GCGTTGGCGCACAGTGGTGGTTGGTTTGGTGGCAGGCTCCGGGGCGCCCGAGGTGCGGGTTGGGATCGGGAGAAACCCCT
GTCGGCATGGCCGACACCGGCACGGTGGCGCCTGTGGGTGCCTCCTGACCTTCCGGGAGGGCGTCGGGGCTACCCTTCCT
CTCGCCTCGGCGTGTACCGGGGGAAACCCTTGGCAGCAACGTCGTCATCGTCGCGATCCTTCTTGGAGGTGTTGATAGGT
GTCGGCGCTTCGGACTCTTGTAGTCTAGTGGAAGAGCCTGGTGGGCGCTGCGATCGCGAGGCTTCTTCGCTTTTGTTGAT
CCGCCGTTGTCGGCATTTGTTTTTTTTACTTTTCTCTGTCGTTTCTTTTTGAGCGTGTCTGTGCTGCTTCCGTCCCAGCA
CCTTTCCTGTATGGTTCGGTTGGTTGCTTTGTATACAAAGCGGGGAAAACCCTTTTTCGGTAACAACAGCTGGGCGTTGT
AGATGACAGATTGACAGATCCTGTGTTTGCGTGCCAAGTGTG--AACCGGAGTCGCGTC------TCCTAGGCGTGCGAC
ACGAGCTAGCTCGTCACGTATG--TATACCGGTACCACGCTGAGCATCCAGCACCGCCCACTAGTCCAGTAATCCAGCCA
GCTAAGCCTC---TTCCTCCTCAGTGCATTGCCAGGGCTAATCCAAAAAGACAGCCTACCAGCTAAAATGTGCTTCGAGT
TCAGCTCCTGCTTCGGCGGCGGCAGTGACGACTACGGCGGCGAGCGGTCCAACCGCAACCGCCACGAGGCCGGAGGTCAT
CGCCGAGGCCGCAGAGCTAACAACAACAGGAACGGCTACTACGCCGGCGCCGACAACAAGGCGCCGCAGTCGACCTACCG
GCGGCCGCCCACCGCAGTCGACGAGGCTGGGCACAAGGCCTATCACGACCACGCTGGCGCCGGTGCCCGCGGTGGATACA
CCGCTTAC------GCGCAACACAAGGCCGACATCGAGACGCTCAAGCTTTCTGCGTGTCACAACAAGGTCAGCGACGAG
GCCTACACGGCGCGCCTCCAAGAAGCTGCTACTGACCATCGGAACAACACTGCCACAAATTACCACCATTACCCAACCAC
CACT----------------------------------------------------------------------------
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>chr3D_735
CTGAGA--------------------------------------------------------------------------
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--------------------------------------CGAACCTCATCCATCTGGACCTAAGCAGCAACAACAACTGGG
CGTGGGAGA-----------------------------------------------------------------------
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-----------TGATAGATCCTGTGTTTGCGCGTCAAGTGTG--AACCGGAGTCGCATCTCCTAGTCCTAGGCGTGCGGC
ACGAGCCCTCTCGTCAGGTATAAATATACCCGTACCACGCTGAGCATCCAGCACCACCCACTAGTCCAGTAATCCAGCCA
GCTAAAG--CCTCTTCCGTCTCAGTGCAGTGCCAGGGCTAATCCAAAAAGACAGCCTACCAGGAAAAATGTGCTTTGAGT
TCAGCTCGTGCTTCGGCGGCGGCAGGGACGACTACGGCGGCGAGCGGTCCAACCGCAACCGCAACGAGGCCGGCGGTCAT
AGCCGGGGCCACAGAGGGAACAACAACAGGAACGGCTACTACGTCGGCGCCGACCACAAGGCGCCGCAGAGGACCTACCA
GCAGCCGCCCGCCGCAGTGGACGAGGCCGGGCACAAGGCCTATCACGACCACGCTGCCGCCGGTGCCCGCGGCGGTTACA
CCGCCTACACGCAAGCGCAACACAAGGCCGACATCGAGACGCCCAAGCTTCCCGCGTGGCACAACAAGGTCAGCGACGAG
GCCTACACGGCGCGCCTCCAAGAAGCTGCTGCTGATCACAGGTACAACGCCGCCACGGATTACCACCATTACCCAACTAT
CGCTCTCGGCAGGTACTAGCTACTTGTTAGAAGTTAGAACTAGCTAGCATGG-CAGTCCATCAATCCCTCCCTAGCCCGA
AACACTGCCTCTTGCTACTGTCAGGTAGCTCTGTTTTTACGCTGTTTTTTTCCTTTCTCTTTCGATTCTCATCAGGGTTC
TCACATGCTGAGGCCCAACGGCACCTAGAAATTGTGTGTGAAATCCAGGATCAAGGGGGTGTAGATTTTGAACAGAGCCT
CCTCGAATATGTCGATGGATGTGCGGCACAAGTTGTA-----------------------------CTTCTCATCTAGTA
GTTGTTTGCTTGTACTTTAGTTGTGACCGCTTTCTTCTTGTCTGATATAATCAAGTGAAAGAAAGCATTGTGAGATCTCA
GATGAGTCCCCATTTCTGCTGTTTCTATGTCCATGTCTGTTTTAACTCACCCAGCTCCAAAGCATGTGTGTGCCTGCTGC
CAGGAAATTGGTACCTCAATTAAATTAGCTGCCAATTTGCGTGTAAACTACCATTGCTTCTTTATTCGTTCGGGTTGTTC
TCGTCTCACAGCCATTCTGAAGCACTGAATGCCCACCACAATTTGGATTAAGCGTGAACATCATACTTCTTAGGCATGTT
TTCAGGTCCTAAATATGTATACTGATCGTTTCTCATCGAAAGGGCCGCCCTGATTTCCATTAGAGGAAACCAGAATTTGG
TACAACGCCCGGAGTACGAATGTGTATAACATTGTGCTTTCTTTTCTATATTTTCTGGCAAGTGGCACATACGTTTCTTG
ACGCTATACTTGTTATTTTTCTTGGAGGCTAATGGCGTGATGCCCCACCCGAGGTTTGAATAATTTTTTATAAAGATAGG
AGTTGTCTGAAATAATTACTCTCTCCATTCCTAAATATATGATGTTTTGGTAGTTCAAATTGAACTATGAAACCCCCCTA
TATTAAGGAACGGAGGGAGTACAATCATAAGCAAAAAGCAATGGTAAGATGTGCCATGGTCTTCCTGAGAAAGAATGTGC
AAATAAAGAAAGTGTGAACACTGATTATTTTTTCTTATCTCAAATTCTGATACCATGAGTCGTGACTAGGTCCAATGAAT
TGATTGATTGTTCGCATAACTGAAATATTCCTCTGACAAAGCACAAAGCATTGGAAAATAGAGCTATCATTAGTTGAGTT
TGCTCAATTACACAGCCATCCAAGGTGATGCAAAACGGTCCAAGGTGAGCTTTAAGCAGCCTCATGATGATTCGAACTGA
ACCTTGTTTCATACATCCACCACCATTACCTTCAGGAAGCCACCGATAAAGAACTTTTTGGGACACAAAATCTAGGTGTG
TGATTGTCCCCTGTGTATCCTTCCTTGCCCCATAAATTTTCAAAAATTTCATGTGAAAATCCAGATTGCCGGTCAGTAGA
ACTTGTAAGACCAAAACTAGTCAGCTATGATCTCTAAGCTCGGTAGTTCCATGGAAGTACACTGCCATGAATAATTTGTC
ATTGTTGGTTCATTGTCGACGGACAGTCAAAATCGTTAGTGATAGGACTCGCCATAAACCGAGGTTTCTAAGAGGTAACT
TATGTACATGAAACTTCTCTTATGGCAAATGTCTTGTACTATACTTAACACTGCACTCTATATAACTCACCAGTCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTTTGGAATTTGATCAGTCTTCTCAGCTGCTGAAAC
TGAAAAGGCACTTGAAATAGTAGTATGTGAGAGCCAGGACCAGGGATCAGAGCCTCCACGCATTTCTCCACGGATGAGCG
GCTGTTTGTCCATCAATCCCTCCCTAGCCCGAAACAGTGCCTCTTGCTTCTGTCTGTTTTTTTCCTTTCTCTTTGGATTT
TGATAAGCCTTCTCACATGCTGAAGCCGAAAGGCACCTAGAACGGTGTGTTAGATCCAGGAACAAAGGGGGTGTGGATTT
TGAACAGAGCCTCCTCTAATTTGTCGATGGATGTGCAACACAAGTTTTAGCTCCAGGAAGCTTTTGTCAGTCTTCTCATC
TAGTTGCTTGCTTTTACTCTACTAGTTGTGACGGCACTCTTCTTGTCTGATATAATCAAGTGAAAGAAAGCATTGTGACA
TCTCAGATGAGTCCCCATTTCTGATCTTTCTAT-----------------------------------------------
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>SNPs
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
---------------S------SS--------S--SSSSS--S-----------S---S---------------------
---S--S----------------S---------------SS--SS-SSSSS-S---S--S--------S--S--------
------S--S----S-S----------------S--------------------------S--SS----S----------
S----SS-------------------------------------------------------------------------
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------------------S-----------------------SS------------------------------------
---------------S----------------------------------------------------------------
S-----------------------------S------------------S------------------------------
---------------------------------------------------------------------------SS---
-------------------------------------------S------------------------------------
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--------------------------------------S-------------S-----------------S------S-S
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----------------------SSS--SSSS-----S--------------SS-------------S------------S
----S--S--S---------------------------S-S---------------------S----S-------S----
--------------------------S-----S--------S--------------------S-----------------
-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------S
-S----------------S------------------------------------SS-------------------S---
-----S-----------SS-S---------S---S--------SSSSS-S-S-SSS-SSS--S-SSSSSSS-SS------
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--------------------------------------SSS---SSSS----SS---S-SS----S--S-SSSSS-S-SS
SSSSSSS-SSS--SSSSS--SS-SSS-S-SSS-SSSSSSSSSSSSS-SSSSSS-S-SS-SS---SS-SSSS-S-SSS--S
SSSSSSSS----SS------------------------------------------------------------------
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-------------------------------------------------------------------------------S
------SSSS-S-S-S-SSSS-S--SSSSSSSSS-SSSSSS-SS-SSS--SSSSSSSSSSS-S--SSSSSSSSSSSSSSS
SS-SSSSS-SSSS-SSSSSSSSSSSSSSS-SS-SSSSSS--SSSSSSSSSSSS-SSSS-SS-SSS-SSSSSSS-S-SSS-
S-------------------------------------------------------------------------------
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------------------S------S-S--SS-SS-S-SS-SS-----SS--S-SSSSSSSSSSSSSS-SSS-S-S-S--
-SSSSS-SSSSSSSS-SSS-SSSSSS-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_108
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--------AGAGTCTGCTTTGGAGACGC----------------------------------------------------
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>reverse_3018
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---------------------------------------------------------GCTAGGAGCGTCCGGTTTTA---
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