>input_sequence_83579
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-------------------------------------------------------ATGGCGAAGCATCACCCCGATCTGA
TCATGTGCCGGAAGCAGCCCGGCATCGCCATCGGCCGCCTGTGTGAGAAGTGCGACGGCAAGTGCGTCATCTGCGACTCG
TACGTGCGCCCCTGCACCCTCGTCCGCGTCTGCGACGAGTGCAACTACGGCTCGTTCCAGGGGAGGTGCGTCATCTGCGG
AGGGGTGGGCATCTCGGACGCCTACTACTGCAAGGAGTGCACGCAGCAGGAGAAGGACCGCGACGGGTGCCCCAAGATCG
TGAACCTGGGGAGCGCCAAGACCGACCTCTTCTACGAGCGCAAGAAGTACGGTTTTAAGAAGCGATAG------------
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>chr2D_1_TraesCS2D01G492300
TTCTAGCTCCACTGCTAGTTGGTGAAAATGTGTGCTATGATGTGGCTTCTGTAGAAAGCAGCAAACA------CAC----
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---AATTTGCAACCATACCCACTGTATCTGTTTTAATTATCCCAT-----------------------GGAACCTGATGA
CAGTAAATGAAGGCGTTGGAAT-GATGGGGTTGAATTTGAAATCATACTGTCATGGTTGAATCAATGTTCAGGATATCGG
TAACTGGTACTATATCAGTCGGGTGCTGAGTAGGGGATAAATGGGCGAATTGTGCAGTTAATCAGACGATAAATCAGTTA
ATTGGCTATTCGGTGACCCACCGAATAGCGATTCACTGACCGAGATGCCGATTAACTGGCCGATATTTGAAATTGTTGAT
TATGAATTCTAGTGGTATACTTCCTTTTCTCTC-----AGAGCAATCTGTTCTGTTCTGTTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNN----------------------------------------------------------------------
--------------------------------------------AAGTTGCCACTGGTTGCAAGTTCAACAAATAAG---
-------AATTTGCTTCTTCTCGAGATGCTACGTCCAAAGCTCCAGTGACCAAATAAACAATTTACCTTTTGATTCGATG
CTTTACCATTTTACAGTATTTCTTTTGCG--------CATTAGCAATTTGCTTCTCCTGATGCTACATCCAATGCTGCAG
TCAGCTGAGTTAGCACGTTTATTTCTCTTAGGGATGCTTTTACCATTTAATTTCTTTTGCTGACACCCTAAGAT-GACTA
GATTCTGACAAGCAATGTGCTCCTGGTTTTCACAGGCTAGCAGCATCCGACAGCCATGGCGAAGCATCACCCCGATCTGA
TCATGTGCCGGAAGCAGCCCGGCATCGCCATCGGCCGCCTGTGTGAGAAGTGCGACGGCAAGTGCGTCATCTGCGACTCG
TACGTGCGCCCCTGCACCCTCGTCCGCGTCTGCGACGAGTGCAACTACGGCTCGTTCCAGGGGAGGTGCGTCATCTGCGG
AGGGGTGGGCATCTCGGACGCCTACTACTGCAAGGAGTGCACGCAGCAGGAGAAGGACCGCGACGGGTGCCCCAAGATCG
TGAACCTGGGGAGCGCCAAGACCGACCTCTTCTACGAGCGCAAGAAGTACGGTTTTAAGAAGCGATAGACGAACGAGGCT
GGTTCGTCAGGCCCTTTGGGGGGCCTCATTTTGTGCTGTTGTGGCATGCTGGCATTTGATC---GATACCAAGAGTAGGT
TTGCCGAACGAACAGCGCTGTATTCATGG--------TATGGTTTGGTACTGATAGGAGAATACAACCCTCTGATCTTTG
ATCTGTAATAACTGTTTGTGATGTATGGTCTG-------AAGTGAGTCTAGCTGGACTCTCAACTGCTTATGCGGTGGCA
TGCGCCG-----------------TGACTTGAAATGTGGATCGAGATGACTGGCTTCCCGTGCCGTGTCATTGTCTTGGC
CGTTGCAAGTTGCGACGACGTGACATGGTTGTTATCTGGAAATGAAGCAAGCTGGCAGCCGATGGCGCC---TAGTGTGC
TTTTCAGAGAGCCAGCTGGAAGTG------CTTTGATCAGTGTCCCGTCTGCGTGGTTGAGCCTGTGGGCAGGGCACTTG
TAGCGCTTAGGCATGTCCAGAATCCTGTATCGCAGCTTTCAGAACTGTGAAGATGCTTCGCGGCGATCCCCACAGGATTG
TGGTTTCTGGTTTCTTCAGGTGGAGGTTACATACATGT-AGCCACGTAGGGTTACCTCTGTTACCAGCAAAGCGTTCGAA
AGTTGAATGAAAGGAGCCCCAGGCTGAGACTGAGATGATAAAGTAAAATAAGGCAC-AAAGTCAGCGAATCAAAGTCAGG
GGAGGGGGGCACAG----GGCACGCTGAAAATACAGTGCCGCCACGGTGATGATGGCAGGAACCCACCCAAACTGTGCAC
TTTCATCATCATCATCATAAGCAG-----------CAGGTCCCTGTCAAGGA-GGAGTTCCTGTCCAGTACGCCTCCTTA
AAACGCTAACCTCCGACTAACCTGCTTCTGTCAAGCAGTATAGTACTGTACGTCTCATGGACCTTGCTCAATCTGCTAAC
CAACTATG-----------------GTAAAATTACGCGCCGTCTTGCATGACCTACCGGTTACGGATCGTAGCGG---CA
CGATTACGTATTTGCCCTCGGGGCGAGCTG
>chr2A_12
CTA-----------CTAGTTGGTGAAAATGTGTGCTATGATGTGGCTTCTGTAGAAAGCAGGAAACA------TACATGT
CTTTGTGCTTTTATGATGGAATGTTTTGTATGATTGGCGAGACTCTAATGACATTAAATGAATATATTGAAAAAGGTGGA
TGGAATTTGCAGTCATACCCATTGTGATATGTTTG------------------------------AAGGGACCCTGATGA
CAGTAAATGAAGACATTGGGACGGATGGGGTTGAATTTGAAACCATACTGTATTTTTG---TCAATGTTGAGC-------
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-----ATTCTAGTGGTATACTTCCTTTTCTTTATAATAAGGGCAATCTGTTCTTGTCACCTTGATGATGTAGAGCTTGAT
GAATTACTAGTTGTAAAAATAATTTCAATGT----AATGTTATCTTGTTTGCTTCTA---TGCCGGGAGGGGGTGGGTGT
GGGGGTATT-----------------------------------------------------------------------
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--------------------------------------ACACGTAAGTTGCCAGCAGTTGCAAGTTCGACAAATAAAGTG
CATCAACAACTTGCTTCTCCTCGAGATGCTACATCAAAAGCTCTAGTAACCTAATTAACAATTTGCCTTTTGTTGGGATG
CTTCACCACTT-----TATTTCTTCTTTGAGTGCAACCATTAGCAGTTTGCTTCTTGAGCTGCTACATCCAATGCTGCAG
TCAACTGCATTAACCAATCTGTTTCTCTTAGGGATGCTTTTACCATTTAATTTCTTTTGATGACATCCTAAGAT-GACTA
GATTCTGACAAGCAACGTGCACCTGGTTTTCACAGGTTAGCAGCATCCGACAGCCATGGCGAAGCATCACCCCGATCTCA
TCATGTGCCGGAAGCAGCCCGGCATCGCCATCGGCCGCCTGTGTGAGAAGTGCGACGGCAAGTGCGTCATCTGCGACTCG
TACGTGCGCCCCTGCACCCTCGTCCGTGTCTGCGACGAGTGCAACTACGGCTCGTTCCAGGGGAGGTGCGTCATCTGCGG
AGGGGTCGGCATCTCGGACGCCTACTACTGCAAGGAGTGCACGCAGCAGGAGAAGGACCGCGACGGGTGCCCCAAGATCG
TGAACCTGGGGAGCGCCAAGACCGACCTCTTCTATGAGCGCAAGAAATACGGTTTTAAGAAGCGATAGACGGACGAGACA
GATTCTTGGCCAGGTCCTCTGGGCATCATTTTCTGCTG-----------------------------------------T
TTGCCGAACGAACAGCGATGTATTCGTG--------TTATGGTTTGGTACTGATAGGAGAATGCAACCCGGTGATC-TTG
ATCTGTAATAACTGTTTGTGATGTATGGTCTG-------AAGTGAGTCTAGCTGGACTCCCAACTGCTTATGCGGTGC--
-TATGTGCCGTGACTGTTTGTTGTTGACTTGGAATGTGGATCGAGATGACTGGCTTCCCGTGCCATGTCACTGTCTTGGC
CGTTGCAAGTTGCAGCGACGTGACGTGGTTGTTATCTGGAAATGAAGCAAGCTGGCAGCTGATGGCGCCCG---GTGCGC
TTTTCATAGAGCCGGCTGGAAGTG------CTCTGATCAGTGTCACGTCTGCGTGGTTGAGCCTGCGGGCAGGGCACTAG
TAGCGCTTGGGCATTTCCAGAATCCTGTATCGCAGCTTTCGGAACTCTGAAGATGCTTCACGGCGAT-CCCACAGGATTG
TG-------GTTTCTTCAGGTAGAGGTTACATGTAGCCAAGCCACGTAGGGTTACCTCTGTAACCAGCAAAGCATTCGAA
AGTTGATGTATGAAAGCCCCAGGCTGAGACTGGGAT-ATAAAGTAAAATAAGGCACGAAAGTCAGCGAATCAAATTC---
--AGGGGGGCACAG----GGCACACTGAAAATACAGTGCCGCCACCGTGATGATGGCAGGAACCCACCCAAACTGTGCGC
TTTT---ATCATCATCATAAGCAG-----------CAGGTCCCTGTCAAAGGGGGAGTTCCTGTCCAGTACGCCTCCTTA
AAACGCTAACCTCCGACTAATCTGCTTCTGTCAAGCAGCC-------GTACGCCTCATGGACTTTGCTCAATCTGCTAAC
CAACTTTATACTACTAGTACTAGTAGTAAAATTACGTGCCGTATTGCATGACCTACCGGTTAAGGATCGTAAGGGCAACA
CGATTACGTATTTGCCCTTGGG--------
>chr2B_12
CTA-----------CTAGTTGGTGAAAATGTGTGCTATGATGTGGCGTCTGTGGAAAGCAGGAGACATATGCCTACATGT
CTTTGTGCTTTTATGATGGAAT-------ATGATTGGTGAGATTCCAATGACATTAAATGAATATATTGAAAAAGGTGGA
TGGAATTTGCAGTCATACCCATTGTTGTATAGATTCTAAAAACATAGTATCTCACCAATCACAAAAAGGGACCCTGATGA
CAGTAAATGAAGACATTGCGACT-ATGGGGTTGAATTTGAAATCATACTGTATTTTTG---TCAATGTTGAGT-------
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-----ATTCTAGTGGTATACTTCCTTTTCTTTATAA---GGGCGATCTGTTCTTGTCACCTTGATGATATTGAGCTTGAT
GAATTACTAGTTCTAAAAATAATTTCAATGTAAGGAATGTTATATTGTTTGCTTCTACTATGCCAGGAGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGTAAGTTGCCAGTGGTTGCAAGTTCAACAAATAAAGTG
CATCAACAAATTGCTTCTCCTCGAGATGCTACATCCAAAGCTCCAGTAACCTAATTAACAATTTGCTTTTTGTTGGGATG
CTTCATCACTT-----TATTTCTTTTGTGAGTGCAACCATTAGCAGTTTGCTTCTTGAGATGCTACATCCAATGCTGCAG
TCAACTGAATTAACCGTTCTGTTTCTCTTAGGGATGCTTC-ACCATTTTATTTCTTTTGCTGACAGCTTAAGATTGACTA
GATTCTGATAAGCAGCATGCTTCTGGTTTTCACAGGATAGCAGCATCCGACAGCCATGGCGAAGCATCACCCCGATCTGA
TCATGTGCCGGAAGCAGCCCGGCATCGCCATCGGCCGCCTGTGTGAGAAGTGCGACGGCAAGTGCGTCATCTGCGACTCG
TACGTGCGCCCCTGCACCCTCGTCCGCGTCTGCGACGAGTGCAACTACGGGTCGTTCCAGGGGAGGTGCGTCATCTGCGG
AGGGGTGGGCATCTCGGACGCCTACTACTGCAAGGAGTGCACGCAGCAGGAGAAGGACCGCGACGGGTGCCCCAAGATCG
TGAACCTGGGGAGCGCCAAGACCGACCTCTTCTACGAGCGCAAGAAGTACGGTTTTAAGAAGCGATAGACGAAC------
---------------------------------------------ATGCTGGCACCATTTGATGGATACCAAGAGTAGGC
TGGCCGGACGAACAGCGCTGTACTGTATTGGTGTTATTATGGTTTTGTACTGATTGGAGAATACATCCCTGGTGATT---
ATCTGTGATAACTGCTTCTGATGTATGGTCTTAACTCTTAAGTGAGTCTAGCTAGACTCTCAACTGGTTATGCGGTGGTG
ATATGCGCCGTGACTGTTTGTTGTTGACTTGGAATGTGGATTGCGATGACTGGCTTCCCGTGCCGTGTCGTTGTCTTGGC
CGTTGCAAGTTGCAGCGACGTGACATGGTTGTTATCTGGAAATGAAGCAAGCTGGCAGCTGATGGCGCCCAGTAGTGTGC
TTATCATAGAACCAGCTGGAAGTAGTAGCACTTTGATCAGTGTCCGGTCTGCGTGGTTGAGCCTGTGGGCAGGGCACTGG
TAGCGCTTAGGCATTTCCAGAATCTTGTGTCGCGGCTTTCAGAACTCTGAAGATGCTTCACAGCGAT-CCCACAGGATTG
TGGTTTCTGGTTTCTTCAGGTGGAGGTTACATACATGT-AGCCACGTAGGGTTGCCTCTGTTACCAGCAAAGCATTCGAA
AGTTGATGAATGAAAGCCCCAGGCTGAGACTGAGATGATAAAGTAAAATAAGGCAC-AAAGTCAGCGAATCAAATTC---
--AGGGGGGCACAGCACAGGCACACTGAAAATACAGTAGAGCCACCGTGATGATGGCAGGAACCCACCCAAACTGTGCGC
TTTT---ATCATCATCGTCGTCGTCGTCGTCGTCACAAGTCCCTGTCAAGGA-GGAGCTCCTGTCCAGTACGCCTCCTTA
AAACGCTAACCTTCGACTAATGCGTTTTTGTCACAAAGTACGTAGTAGTACGTCTCATGGACTTTGCTCAATCTGCTAAC
CAAGTTTATGCTACTAGTAAAACT------ATTACGTGCCGTATTGCATGACCTACCGGTTACGGATCGTGGCGG---CG
TGATTACGTATTTGCCCT------------
>SNPs
S-SSSSSSSSSSSS-----------------------------------------------S-----------S------
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-----------SS--------S---SSSSSS---SS-S-SSS-----------------------------S--------
------------S-S----S-S-----------------------------SS-SS-SSSS--------S--SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-------------------------S-S-------S------------SS--SSS-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
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-----------------------------------------------------S----------------------S---
---------S--------S-------------S--------------S---S---S--------S-------S-SS----
---S----S--SSSSS-----------S-----------------S---------SSS----------------------
---S----S---S-SSS-S-S--------------------------------------------S--------------
---------------S--------------------S-------------------------------------------
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-----------------------------------------------------------------------------S-S
-S---S-SSSSSSS-SSSSS----S-------S-----SSSSSSS---------SSSSS-S-------------------
-------------------------S--S-----------------------------------------S---------
------------------------------------------------------------------------------SS
SSSSS--------------------------S------------------------------------------------
-------------SS--------------------------------------------S--------------------
------S-----------------------------------------------------------------------S-
--------------S-------------------------------S------------S-------S------------
-------------------------------------------------------------------------S------
------SSS-SSSS------------------------------------------------------------S--SSS
SS---------------------S---------------------S--------------------------------S-
---SSSS-------------------------------------------------------------------------
--------------------S-------------------SSSSSSS---------------S-----------------
-----S-S----------------------------S-----S-------------------------------------
------------------S---SSSSSSSS
>forward_421
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-TTGGCTATTCGGTGACCCAC-----------------------------------------------------------
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>reverse_1843
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--CGCCGTGACTTGAAATGTGG----------------------------------------------------------
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