>input_sequence_83577
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ATGGCGACAAAGTACATCATCGGCGCCCTGGTCGGATCCTTTGGCATTGCGTACGTCTGCGACACGACCGTTTCTGACAA
GAAGATCTTTGGAGGTGAGTAGTACCAT----GCTGTTACAT-ATATGCCCGTAGG----ATGCCTGTGCCTAACCTCTT
GTAAGAAT--CCATCTAATCGCTGCTTCTTACTTTTGGAAATAGGCACTGTTTGCAAGACCGCGACCGACAAGGAGTGGT
TTCAGGCCACGGATGCCAAGTTCCAGGCCTGGCCTCGCACCGCTGGGCCGCCGGTCATCATGAACCCCATCAGCCGCCAG
AACTTCATCGTCAAGAACCCTTGA--------------------------------------------------------
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>chr2B_1_TraesCS2B01G602500
TTTTCCATTCTTAGTATCCCAGCCATTTGGCAATTTACAAAAAAATGAACTCAACTGTATTAAGACAAATTTTACATTGA
ACAATTATTCTTCAGACTAATAATTACTGTA---------------------------------------------CGTC
CTCGGTTTCACGTCACAGAGACCCATTATCTAGCGCTCGTCG------ACGGCTCCGCACCCT--------------CAT
CCTCATCCCTCTCCCTCCAGATCCACCCTCATTCGCTCTAGTAACAATTGTACCCCAAAATACCTTTCTCTTCCCTCCT-
---CTCTCACCGTAGCTGCTCT--CTCTCCTCGCCCCGCTCCGTCATCCCCTCCCGTCCCT--CCCGTCTAGGGTTCGAT
-----CGCCCACCTCGCCGGCCAGGTAAACCCGCTGTTTCCCCCCGCCACGACCGGATC---------TCGAGGCGATCC
GTCCTTTCCCCCGATTCGCG------TGCCGCAGATCTGTGTCGCATGTCGCTGTTTCCCGCCTGATCTGGTTTACGTGC
TGGGTAGCTAGGTGATCCATGCTAGCCTAAGATTCTGAGGCTTTGCATGGCTGCGACGTTCGCGGGCCGGGGTCGTTAAT
CGGCGGCCGATGGGAATGATGGGTGGCGACGTTTCGTTGGTGGAGCTAATTCTGTTACTTTAATTCTGGATAGACCGCAT
GGTTTCATTTTTTGAATATGATGATACATGTCTGCTGTGTCTA---------GTATGCATGTTGAAATGGGCACAAAATC
---------TCGCCGGCGAACAAGCTTTGGGTGGGTGGTTATTAAATCCCTACACATCCACGCACCGGATATGCATGCAT
GTTGAAAAGAGCACATGATCTCTCTTA----GTTTTTGTTGGGCAACAAACAACCCGTAGATAGTTCATCTGCACCCTTG
CACATGACTTGTCATCAAAATGGACAAAAAAGAATGTATCTAGAACTAAAATACATCTACATACAACCCTTTTTCTTCAT
TTTGATGACAAGTATTTTCGGACAGAGGGAG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TATTTGACAATATATATGTCC----CATCTCTTCACTGTGCAGTAGCA
ATGGCGACAAAGTACATCATCGGCGCCCTGGTCGGATCCTTTGGCATTGCGTACGTCTGCGACACGACCGTTTCTGACAA
GAAGATCTTTGGAGGTGAGTAGTACCAT----GCTGTTACAT-ATATGCCCGTAGG----ATGCCTGTGCCTAACCTCTT
GTAAGAAT--CCATCTAATCGCTGCTTCTTACTTTTGGAAATAGGCACTGTTTGCAAGACCGCGACCGACAAGGAGTGGT
TTCAGGCCACGGATGCCAAGTTCCAGGCCTGGCCTCGCACCGCTGGGCCGCCGGTCATCATGAACCCCATCAGCCGCCAG
AACTTCATCGTCAAGAACCCTTGAATAGGTG---------GCACGAGCGGCATCTCGCTCCCACCATGGGATCCCAAGTT
TCTTTTCTAGGGTTTTGAAGTTCCTAATAATAGGGACTTGA-AGTTGGGGTATCCTCTCTTGTTTCACGAATTTCAGTTT
CCGTGAGCAACTTTGA-GGTGTTTTACCGCTTGCTCGCTCGCCTTTCGATGAGCTCTCTTCCTCGGTGAAATTATACACA
TCCACCAGGCAGTAAAATAACTGCATTGTTGTTTCCGCACTGTGTTTCATGTAGTGCTGTGTTTCTTTCTGATCT--GAT
GCTCCAAGTTTATGCTGTGATGTTAACGAGCCTATTGTTTTTGACTTTTAGCATGGCGGACTGGTGGTGCACTATAATTC
TTTTTTGCTTG---------------------------TGCTGCTATTA-TGCACAATGGTAAACTATTGTTGAAACGAA
TTCGTCAGCTGCTGT-----------------------------------------------------------TATTTG
CAATGTTAAACTATTATTGAAAAGCATTCATCTGCTGCTGTTAGATTGCGTATCATTCTGTGATATCCTGCT-AAAATGC
TGGACTCAGCTGGAGTATTGCAGCACATCACTTTCCACTCAAGCCCTAC----ACT------------------------
---------------------------------------------------------AGCAACAGAACTTTGT----GGT
TTTG---------------------AAGCCATTCACATGACCCAAC-GTTCTTGATCCGCTGAAATGGTTTACATGCAGA
TTTTTTTAAAATTGGGAGATGGTAACTGGAACATCAGATTTCTAAATTTGTTTGCTTATAGATGGGAAGCACATGAAAGG
GGCGAACACAAACACATGATGACAAAAGGACAAGCGAAAAAAAAACAGAATTGATATACTTTACTGCGGTTATGCACATT
CGCAAACCATCATACTAATTGGCAAGAATATATCAGCCCCTCTCTAGAGGGAGGCTCAGCTAGAGTCTTGCAGTACATCG
GTGCCTCCTGAAAATGGTACACTCAGCTGGAGTCTTCAGTGCATCAGTGCCTCCTGAAAATGGTACACTCAGCTGGAATC
TTGCAGTAAATCAGTGCCCACTGAAGCCCAACTATG
>chr2D_1
TTTTC-ATTCTTAGTTTCCCAACCATTTGATAGTTTGCAAAAAATTGTACTCAATTGTATTAAGACAAATTTTACATTGA
ACAATTGTTCTTCAGACTCTTTCCGCAAAAAAAAAAAAAGTTCTTCAGACTCTAGTTGTGGTCGACGTGGCCTCTCCGTC
CTCGGTTCCACGTCACAGAGACCCATCCCACCGCTCTTTCCAGATCACACGGCTCCGCACACGCCCGGCCCCACGCGCAT
CCTCATCCCTCTCCCTCCAGATGGACCTCTCAGTTCCTCGCTATTAATTACCC--------ACCTCTCTCTTCCCTCCTC
GATCTCTCCCCGTAGCTCTCTCTCCTCGCCGCGCTCCGCGTC------------------CTCCCCTCCTAGGGTTCGAA
GCCCCCGCCCACCTCGCCGGCCAGGTAAACCCGCTGTTTCCCCCCGCCACGCCCGGATC---------TCCGGTGG-CCC
GTCCTTTCCCCCGATTCGC----CGCTGCCGCAAATCTGTGTCACATGTCGCTGTTTCCCGCCTGATCCGTGTCGAAGCC
CGCGTCGCGGTGCGCTGTGTGTGTGTATCTCGAATCGTGCTTGTTCATGCGT----------------------------
----------------------------------------------------------------------------GCCT
GGTTTCATTTTTTGAATATGATGATACATGTCTGCTGTGTCTA---------GGATGCATGTTGAAATGGGCACAAATCT
GGCTAATTTTCGCCGGCGAACAAGCTTTGGGTGG----TTATTAAATCTCTACACATCCACGCACCAGATATATATGCAT
GTTGAAAAGAGAACATAATCTCTCTTAATTAGTTTCTGTTGGGCAACAAACAACCGGTAC----TTCATCTGCACCCTTC
CACATGATGTGCACTAGATGCATGCCCCTTCACTTGCCCAATAATACCACAATGGATCCATCTCGTGTTCAACTGGATTG
ATTCTCTTCTACCATCTTGTGTTCAACTGGATTGATTCTGTTCTGCACCCTTGCTCATGTCGATGTCTACGCGAATCACG
AAAGCAACTGATTGTCTTAGTGGCCAGTGGGGGTG---------------GCCTGCCATGCTTCCTGGCCATTTTACACG
CATGTGC-----------------ATGCATTATATTTGACAATACTTATGTGCTGCTCGTCTCTTCATTGTGCAGTAGCA
ATGGCGACAAAGTGCATCATCGGCGCGTTGGTCGGATCCCTTGGCATTGCGTACGTCTGCGACACAATCGTTTCTGACAA
GAAGATCTTTGGAGGTGAGTACTACCAT----GCTGTTACAT-ACATGCCCATAGGATGCATGCCTGTGCCTAACCTCTT
GTAAGGAT--CCATCTAATCGCTGCTTCTTACTTTTGGAAATAGGCACTGTTTGCAAGACCGCGACCGACAAGGAGTGGT
TTCAGGCCACGGACGCCAAGTTCCAGGCCTGGCCTCGCACTGCTGGGCCGCCGGTCATCATGAACCCCATCAGCCGCCAG
AACTTCATCGTCAAGCACCCTTGAATAGGTG---------GCACGAGCGGCATCTTGCTCCCACCATGGGATCCCAAGTT
CCTTTTCTAGGGTTTTGAAGTTCCTAATAAAAGGGACTTGAAAGTTGGGGTATACTCTTTTGTTTTATGAATTTCAGTTT
GCGTGAGCAACTTTGA-GGTGCTTTACCGCTTGCTCGCTCGCCTTTCGATGAACTCTGTTCCTCGGTGTAATTATCCACT
AGGCAGTA-----AAAATAACTGCATTGTTGTTTCCGCACTGTCTTTCATG---TGCTGTGTTTCTTTCTGATCT--GAT
GCTCCAAGTTTATGCTGTGATGTTAACGAGCCTATTGCTTTTGACTTTTAGCATGGTGGACTGGTGGTACACTATAATTC
TTTTT-GCTTG---------------------------TGCTGTTATTA-TGCACAATGGTAAACCATTGCTGAAAATAA
TTCATCATCTGTTGT-----------------------------------------------------------TATTTG
CAATCCTAAACTATTATTGAAAAACATTCATCTGCTGCTGTTAGATTGCATATCATTCTGTGATAC-CTGCTGAAAATGC
TGGACTCAGCTGGAGTATTGCAGCACATCAGTGCCCACTGAAGCCCAAATATATATGGCCCAACACTAGTACAAGTATCT
GTGCATGTGATCTTCATA---------ATGTTTTTCGTTTTTGACAAGAACTGTGCGAGCAGCAGAACTTTGT----GTT
TTGAAAAAGGTAACATGATGACCACAAGCCATTCACATGACGCAAC-GTTATTGATCTGCTGAAATGGTTTACATGCAGA
TTTCTGTAAAATTGGGAGATGGTAACTGGAACATCAGATTTCAAAATTTGTTTGGTTCT--ATGGGAAGCACAAGAAAGG
GGCGAACAT-AACACATGATGACAAAAGGACAAGCGAAAAAAAAGACAGAATT---------------------------
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>chr2A_249
CCTC----------------------------------------------------------------------------
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--TCTCTCCCCGTAGCTCTCTCTCCTCTCCTCGCCCCGCTCCGTCCTCCCCTCCCCTCCTCTCCTCTCCTAGGGTTCGAA
GCCACA---------GCCGGCCAGGTAAAGCCAT----------------GCCCGGATCTCGAGTCGATCCGGTGG-TCC
GTCCTTTCCCCCGATTCGCGTGCCGCTGCCGCAGATCTGTGTCGCATGTCGCTGTTTCCCGCCTGATCCGTGTCGAACCC
CGCGTCGCGATGCGCTGTGTGTGTGTATGTCGAATCGTGCTTGTTCATGCGTCTGGT-----------------------
------------------------------------------------------------------TGGATAGGCCGCCT
GGTTTCATTTTTTGAATAC---GATACATGTCTGCTGTGTCAGGGACTCAGGGGATGCATGTTGAAATGGGTACAAAATC
---------TAGCCGGCGAACAATTTTTGGGTGG----TTATTAAATCTCTACACATCCACGCACCAGA----TATGCAT
GTTGAAAACAGCACATGATCTCTCTTA----GTTTCTGTTGGGCAACAAATAACCGGTAC----TTCATCTGCACCATTG
CACATGATGTGCACTAGATGCATGCCCCCTCACTTGCCCAATAATACCACAAT----CCATCTCGTGTTCAACTGGATTG
ATTCTGTTCTACCATTGTCTCATCGCGG---------------------------------GATGTCTATGCGAATCAGG
AAAGCAACTGATTGTCTTAGTGGCCAGTGGGGGTGCTTTTTTGTTTTCTGGCCTGTCATGCTTTCTGACCATTTTACACG
CATGTGAATAGTTTCTTTACAACAATGCATTATATTTGACAATATATATGTCC----CGTCTCTTCATTGTGCAGTAGCA
ATGGCGACAAAGTGCATCATCGGCGCGTTGGTTGGATCCCTTGGCGTTGCATACGTCTGCGACACGATCGTTTCTGACAA
GAAGATCTTTGGAGGTGAGTAGTACCAT----GCTGTTACAT-ACATGCCCATAGGATGCCTGCCTGTGCCTAACCTCTT
GTAAGAAT--CCATCTAATCGCTGCTTCTTACTTTTGGAAATAGGCACTGTTTGCAAGACCGCGACCGACAGGGAGTGGT
TTCAGGCCACAGACGCCAAGTTCCAGGCCTGGCCTCGCACCGCTGGGCCGCCGGTCATCATGAACCCCATCAGCCGCCAG
AACTTCATCGTCAAGAACCCTTGA-TAGGTG---------GCACGAGCGGCATCTCGCTCCCACCATGGGATCCCAAGTT
TCTTTTCTAGGGTTTTGAAGTTCCTAATAAAAGGGACTTGAAAGTTGGGGTATACTCTTTTGCTTTATGAATTTCAGTTT
CTGTGAGCAACTTTGA-GGTGCTTTACCGCTCGCTCGCTCATCTTTCGATGAACTCTCTTCCTCGGTGAAATCTT-----
-CCTCAGTTTC------------------AGTTTCCGCATTGTCTTTCATG---TGTTGTGTTTCTTTCTGATCC--GAT
GCTCCATGTTGATGCTGTGATGTTAACGAGCCTATTGTTTTTGACTTTTAGCATGGTGGACTGGTGGTGCACTGTAATTC
TTTTT-GCTTG---------------------------TGCTGCTATTA-TGCACAATGGTAAACTATTGTTGAAAAGAA
TTCGTCAGCTGCTGTTCTGCTGCTGTTATTTGCAATGTTAAAACTATTATTGAAAAGCATTCATCTGCTGCTGCTATTTG
CAATGTTAAACTATTATTGAAAAACATTCATTTGCTGCTGTTAGATTGCGTATCATTCTGTGATATTCTGCTGAAAATGC
TGGACTCAGCTGGAGTATTGCAGCACATCAGTGCCCACTGAAGCCCAAC----TCT------------------------
---------------------------------------------------------AGCAACAAAACTTTGA----GTT
TTGAAAAAGGTAACATGATGACCACAAGCCATTCACATGACCCAAC-GTTCTTGATCCGCTGAAATGGTTTACATGCGGA
TTTTTGCAAAATTGGGAGATGGTAATTGGAACATCAGATTTCAAAATTTGTTTGC-------------------------
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>chr7A_982
TCA-----------------------------------------------------------------------------
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----------------------------------------------------------------TCATTGTGCAGCAGCA
ATGTCGGGCAAGTACATTATCGGTTCGCTGGTTGGATCCCTTGGCATTGCATATGTCTGCGACGCCATCGTTTCCGACAA
GAAGATCTTTGGAGGTGAGTAC-------CATGCTGTTACATAACATGCCTGTAGGATGCCTGCGCC--CCTAACCTCTT
GGAAGAATATGCATCTGA-CGCTGCTTGTTCCATTCGGATCCAGGCACTGTGTGCAAGACGGCGACAGACAAGGAGTGGT
TTCAGGCCACGGACGCCAAGTTCCAGGCCTGGCCCCGTGTCGCCGGGCCGCCGGTCGTCATGAACCCCATCAGCCGCCAG
AACTTCATCGTCAAGGACCCCTGAATGCGCTGCGGCGCAAGCTCGACCAGCGTTTTGCTTCCACCATGCAG-CCAAAGTT
TCTTTTCTAGGGTTTTGAAGTTCCTAATAAAAGGGACTTTAAAGTCAGGGTATACTATTTTTTTCT-CGAATTTCAGTTT
CCGTGAGCAACTTTGG-GGGGCTTTACCGCTCGCTCACTCGCCTTTCGATGAACTATGTTCCTCGGTGAAATTTC-----
-CCACGAGGCAGTAAAATAACTGCATTGTAGTTTCTGCATTGTATTTCATG---TGCTGTGTTTCTTCCTGAT----GAT
GCTGCACGTTTATGCTGTGATGATACCCAGCCTACTGTTTTTGT----------------CTGGTAGTGCACCATAATTA
TTTTT-GCTTGATTTATGCTGCCTTTGCACCCTGCCTGTGCTGCTGTTACTGCACAATTGCAAACTTTTATTGACAAGAA
TACATCAGCTGCTGT-----------------------------------------------------------------
----------------------------------------TTAGATTGCATATCGTTTTGTGTTCTCTTGCTGAGAACGC
TGGACTCAGCTGGAGTTTTGCGATATATCAGTGCCCACTGAAGCCAAAC----TATGGCCTAACACTAGTGCAAGCCTTT
GCACCTGTGGGCTTGTATGCAGAGAGGATGTTTTTCCTTTTTGGACAGAACTGTGCGATCAACTTCAATTAATTTGCGTT
TTGAACAATGCAACACAATGGCCACGAGCCATTCACATGAACCTGATGTTCTTGATCCGCTGAAATGGTTTACATGC---
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>chr7D_982
TCA-----------------------------------------------------------------------------
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----------------------------------------------------------------TCACTGTGTAGCAGCA
ATGTCAGGCAAGTACATCATCGGTTCGCTGGTTGGATCCCTTGGCATTGCATATGTCTCCGACACCATCGTTTCCGACAA
GAAGATCTTCGGAGGTGAGTAC-------CATGCTGTTGCATAACATGCCCATAGGATGCCTGTGCC--CCTAACCTCTT
GGAAGAAT--GCATCTGA-CGCTGCCTGTTCCATTCGGATCCAGGCACCGTCTGCAAGACGGCGACAGACAAGGAGTGGT
TTCAGGCCACGGACGCCAAGTTCCAGGCCTGGCCCCGTGTCGCCGGGCCGCCGGTCATCATGAACCCCATCAGCCGCCAG
AACTTCATCGTGAAGGACCCCTGAATGGGCGGCGGCGCGAGCTCGACCAGCGTTTTGCTCCCACCATGGAG-CCAAAGTT
TCTTTTCTAGGGTTTTCAAGTTCCTAATAAAAGTGACTTTAAAGTCAGGGTATACTATTTTGTTTTGCGAATTTCAGTTT
CCGTGAGCAACTTTGGAGGGGCTTTACCGCTCGCTCAAACGCCTTTCGATGAACTCTGTTCCTTGGTGAAATTTC-----
-CCACCAGGCAGTAAAATAACTGCATTGTTGTTTCTGCATTGTCTTTCGTG---TGCGGTGTTTCTTCCTGATCTCTGAT
GCCGCAAGTTTATGCTGTGACGTTACCCAGTCTACTGTTT----------------------------------------
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>chrUn_985
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----------------------------------------------------------------TCATTGTGCAGCGGCA
ATGGCGACCAAGTGCATCATCGGTGCGCTGGTTGGGTCCCTTGGAATTGCGTACGTCTGCGACACGATCGTTTCTGACAA
GAAGATCTTCGGCGGTGAGTACTACCATGCATGCTGTTACATAACATGCCCATAGGATGCATGTGCC--CCTAACCTCTT
GGAAGAAC--GCATCTGA-CGCTGCATGTTCCATTCGGATCCAGGCACCGTCTGCAAGACCGCGACAGACAAGGAGTGGT
TTCAGGCCACAGACGCCAAGTTCCAGGCCTGGCCCCGTGTCGCCGGTCCGCCGGTCATCATGAACCCCATCAGCCGCCAG
AACTTCATCGTCAAGGACCCCTGAATGGGCGGCGGCGCGAGCTCGACCAGTGTTTTGCTCCCACCATGCAG-CCAAAGTT
TCTTTTCTAGGATTTTGGAGTTCCTAATAAAAGGGACTTTAAAGTCAGGGTATACTATTTTGTTTTACGAATTTCAGTTT
CCGTGAGCAACTTTGG-GGGGTTTTGCCGCTCACTCACTCGCCTTTCGATGAACTATGTTCCTTGGTGAAATTTC-----
-CCACCAGGCAGTAAAATAACT--------------GCATTGTCTTTCATG---TGCTGTGTTTCTTCCTGAT----GAT
GCTGCAAGTTTATGCTGTGATGTTACCTAGCCTACTGTTTTTGC----------------CT------------------
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>SNPs
-----S---------S-----S-------SS-S---S-------S--S------S-------------------------
------S-----------SS-SSSSSSSSS--------------------------------------------------
-------S------------------SSSSSS--S--SSS-S------------------S-S-----------------
----------------------SS---SSSSSSSS-SSSSS--SS----SSS-SSSSSSSS----S--------------
--------S--------SSSSS-----------------------S---------S---SS-----SS-----------S
---------------------------------------------------S------------------SS-SS-S---
--------------------------------------------------------------------S-SS-SSSSSS-
S-S--S--S-S-S-S-SSS--SSS-SS-SSSSSSSS-S-SS-S-S----SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----S-
-----------------------------------------------------S--------------------------
----------------------------------SSSS----------S-----------------S-----SS------
-----------------------------------S-------------------S---SSSSS----------------
-------SS--SSS-SS-SSSSSS-SSSSSSSSS--SSSSSSS-SSSS-S-SSSSSSSSSSSS-SSSSSSSSS-SSSSSS
S--SSSSS-S-SS------S--SS-----SS-------------------------------------------------
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----------------------------------------------------------S---------------------
--------------------------S------------S---------------------------S------------
--------------------------------------------S-----------------------------------
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-------------S------------------------------------------------------------------
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------------------------------S----------------------S----S------S--------------
----------------------------------------------------S----------------------S---S
S------------------------------------------S-------SSS--------------------------
--------------------------------------------------------S-----------------------
-----S----------------------------------------------------------------------S---
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-----------------------S--------------------------------------------------------
------------------------------S-SS-----S------S------S--------------------------
------------------------------------------------------------------------------S-
--SS----------------------------------------------------------------------------
-----S------------------------------------S--------------S-SS------------S------
--------SS----------------------------------SSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_342
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--TCTCTCACCGTAGCTGCTCT----------------------------------------------------------
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>reverse_2744
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-----------------------CAGCTGGAGTCTTCAGTGCA-------------------------------------
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