>input_sequence_83573
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-------------------------------------------ATGGTGGCGCCGATCGCGGTGGCGTCGGCGGGGCTGG
GGATGCTGGCGGGGGTGGCGATGGCCAACAGGTCCATGCAGGAGGGAAGGCCCGCGGCGGCGGTGCGGTGGCCGCTGCTG
CAGAAGCCGCGATGCGCCACATGCAGCGGGACGGGAAGGGTTGAGTGCCTGTGCTCTCGGTGGTCCGACGGGGACGGCTC
AGGCTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGTGGGTCCGGGACCGGACGTCGGGCGCCCG
TGCGGATCGCCACCGCCTCCGCCACGCCGCTCCGGCCACGGGCGAGCACGCGGTGA------------------------
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>chr2B_1_TraesCS2B01G299900
GTGGTATGGATCATCTTTGTCTTCAAAGGTAATCGATTGAGGCATCGGTAGCCGGTCAAGGGATGATGTAAGATGAGGCT
TCAACAACAAGTTTGCATAACCCGATGGAAACACGAGATCTCTGATAAGGCTATGTCGACGCGCGCCTACAGCGTGCCCT
TGCTGAAGGTGGTGGACCAAAGCTCACTTTGGGGATAAAATTCCGGGACCGGCCTATAGTTGGACTCGCCACCATTGGCA
CACATGCGGTGTTTTCTTCTTGAAGGCTTACCCTAGGAGATGTGTACATTTGGTTTTTTTTCGGTCTATTAACATAGAGT
TAGTGGTTAATTGGTAAAGCTACTTTCCGTCGCGGACCTTCAGCTTTCTTTTCCGGATCAAATTTATTCGGTTGTTGGAT
GTTTTAATAATATATGGCTCCGTGTATCACTTAATGCAGAAGTCGGGTCATCCTTCTTTTGAAAAGAAAAGACATTCTAC
ATTTGTACAATCTGCAACAAAGCATCCTAGATGGAAAATTGCTTGTAACGTAGCCATCAGCTTTAAAAAGTGTTCCTCCA
CGATCGATCCAAGTTTATCTTGAGGAATAATGATGTGATTGTTAGGAAATTTCCGGGCAAAATGCTAGCCAGTGCAGTGC
AGAGTGCAGACCAGCAGGGGCGGCTAGGCAAGGCGACCACAGTAATAAAGGATGGAAAGCGACGCTGCCGACTTTGCCTC
CCCCACTCCAGTAATCCCTCTCTAATTAATCAC---TCTCCCACTAATCAATTTTGCTTACCCCACCCACCATGACCGCG
CTGATTGACGAGGCGGCCAGACACACCCCTCTATAAATCTCGGTCTCCCTCTCGCTCGCTTACTGCCTTCCTAGCGTGCT
TCGTTCACCAATCGCCTACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCG
ATCTGTCGGGGATTTCACGAGGAGGATCTAGCACACGCTGGAGATGGTGGCGCCGATCGCGGTGGCGTCGGCGGGGCTGG
GGATGCTGGCGGGGGTGGCGATGGCCAACAGGTCCATGCAGGAGGGAAGGCCCGCGGCGGCGGTGCGGTGGCCGCTGCTG
CAGAAGCCGCGATGCGCCACATGCAGCGGGACGGGAAGGGTTGAGTGCCTGTGCTCTCGGTGGTCCGACGGGGACGGCTC
AGGCTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGTGGGTCCGGGACCGGACGTCGGGCGCCCG
TGCGGATCGCCACCGCCTCCGCCACGCCGCTCCGGCCACGGGCGAGCACGCGGTGATCGGCCCAGCTCGCGATCCGCGGC
CCCGGCGCTCGATTTTGTTTTCTGGATTTAGAAATAGTAT---TTGTAATACAGCGTGTTAT-----AGAACAGAATAGG
GGTTTGATAGAATATA--GCAAGTGAATTAGTAATGATTCCTGCCGGGCTCTTGCTGTTACTGAATCGAGCCTTGTCGCG
ATGAATATCTGCGCCTGAATATCTCGCGACTTCGGGCGGATGAATTTCCAAGGAATTGTTGTGCTGAAACAACTTTTACG
AGTAAGGAATACGTCCATCCAGGCATCTGGCCAACCAACTTGGTCAGTTTTGCAGAGCGCTGCTAGTGCTAAAACTTTCA
GAGGC---TGAGCTGGGCTGCCGAGCCACACACGTACACACGCCTACACGCCAGAC----------------CAGAACCC
CGACCAATCATCCCAAGCCAGTGGCGTCCGCTATACGCTCCCCCGAGATCTTTTCCAGTGTGACTCAGTTCCACCAGTGC
TATGTGTGCCACAAGAATTTCCTCCTTCCACCGTTCGGAACGCTTTGAATTTTCTCCCTTACTGCATG--CAAGTAGTAG
TACGAACGACATCACAGACATGGACATGTTTGAATTAGACGGTGAATGGTGTGCAATCTTTAATAAGTAGGGTGGCACAT
CCTTGAGCTGTTGCACCACTGAAACCGACCAGCAACCGCATGCTCACCTGTCAATTGCGCCCACGGTTGCATAACACAAT
TGTCTGCCGCCAAATCAGTTGGCTCTCTGCAGAGTTCTTCTCCAACCAAATCAATGGCAACACCCGCAATTTATTTGGCC
AACACATGTCCCTTTAACATTTATTTTATATATAAAATCTCTATATGTACCCGACTGTTCAGCAGGCTGTATTGTTTATT
TTATTACCCTC-AAACACAAAGATGGGCGTTGAGCTAAGCTATTAGGTGAACACATGAAACGCAATATCCAAAGGAATGG
ACCAAGTTTTTGCTGGAGCTCATCTGAAATGGTTAATATATTATGCAG
>chr2A_505
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------------------------TCGTAGATGGAAAATTGCTTGTAACGTAGCCATCAGCTTTAAAAAGTGTTCCTCCA
CGATCGATCCAAGTTTATCTTGAGGAATAATGATGCGATTGTTAGGAAATTTCCGGGCAAAATGGTAGCCAGTGCAGTGC
AGAGTGCAGACCAGCAGGGGCGGCTAGGCAAGGCGACCACAGTAATAAAGGGAGGAAAGCGACGCTGCCGACTTTGCCTC
CCCCACTCCAATAATCGCTCTCTAATTAATCACCATTCTCCCACTAATCAATTTTGCTTACCCCACCCACCGTGACCGCG
CTGATTGACGAGGCGGCCGGACACACCCCTCTATAAATCTCGGTCTCCCTCTCGCTCGCTTACTGCCTTCCTAGCGTGCT
TCGTTCACCAATCGCCAACCTCTC--------------------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCCG
ATCTGTCGGGATTTTCACGAGGAGGATCTAGCACGCGCCGGAGATGGTGGCCCCGATCGCGGTGGCGTCGGCGGGGCTGG
GGATGTTGGCGGGGGTGGCCATGGCCAACAGGTCCATGCAGGAGGGGAGGCCCGCGGCGGCGGTGCGGTGGCCGCTGCTG
CAGAAGCCGCGGTGCGCCACATGCAGCGGGACGGGAAGGGTGGAGTGCCTGTGCTCCCGGTGGTCCGACGGGGACGGCTC
AGGCTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGCGGGTCCGGGACCGGACGCCGGGCGCCCG
TGCGGATCGCCACCGCCTCCGCCACGCCACTCCGGCCACGGGCGAGCACGCGGTGATCGGCTCAGCTCGCGATCCGCGGC
CGCGGCGCTCGATTTTGTTTTCTTGAGTTAGAAATAGTAGTACTTGTAATACAGTGTGTTATAGAACAGAACCGAATAGG
GGTTTGATAGAATATA--GCAAGTGAATTAGTAATGATTCCTGCCGGCCTCTTGCTGTTACTGAATCGAGCCTTGTCGCG
ATGAATATCTGCGCCTGAATATCTCGTGACTTCGGGCGGATGAATTTCCAAGGAATTGTTGTGCTGAAAGAATTTTTACG
AGCAAGGAATGTGTCCATCCAGGCATCTAGCCAACCAACTTGGTCAGTTTTGCAGAGCGCTACTGGTGCTAAAACTTGCA
GAGGA---TGAGCTGGGCTGCCGAGCCAC------ACACACGCCTACACGCCAGAC----------------CA------
-------TCATCCCAAGCCAGTGGCGTCCGCTATACGTTCCCCCGAGATTTTTTCGAGTGTGACTCAGTTCCACCAGTGC
TACGTGTGCCACAAGAATTTCCTCCTTCCACCGTTCGGAACGCTT-GAATTTTCTCCTTTACTGCGTATACA---AGTAG
CACTAACGACATCACAGACATGGACATGTTTGAATTAGCCGGTGAATGGTGTGCGATCTTTAATAAGTAGGGTGGCACAT
CCTTGAGCTGTTGCACCACTGAAACCGACCAGCAACCGCATGCTCACCTGTCAATTGCGCCCACGGTTGCATAACACAAT
TGTCTGCCGCCAAATCAGTTGGCTCTCTGCAGAGTCGTCCTCCATCCAAATCAATGGCAACACCCGCAATTTATTTGGCC
AACACATGTCCCTTTAACATTTATTTTTTATATATAATCTGTTTATGTTCCCGACTGTTCAGCAGATTGTAGTGGTTATT
TTATTGCCCTCAAAACACAAAGATGAGCGCTGAGCTAAGCTATTAGGTGAACACATGAAACGCAATATCCAATGGAAGGG
ACCAAGTC-TTGCTGGAGCTCCTCTTAAATGGTTAATATATTATGCAG
>chr2D_505
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------------------------TCGTAGATGGAAAATTGCT---AACGTAGCCGTCAACTTTAAAAAGTGTCCCTCCG
CGATCGATCCAAGTTTATCTTGAGGAATAATGATGTGATTGTTAGAAAATTTCCGGGCAAAATGCTAGCCAGTGCAGTGC
AGAGTGCAGACCAGCAGGAGCGGCTAGGCAAGGCGACCACAGTAATAAAGGGAGGAAAGCGACGCTGCCGACTTTGCCTC
CCCCACTCCAATAATCGCTCTCTAATTAATCACCACTCTCCCACTAATCAATTTTGCTTACCCCACCCACCATGACCGCG
CTGATTGACGAGGCGGCCGGACACATCCCTCTATAAATCTCGGTCTCCCTCTCGCTCGCTTACTGCCTTCCTAGCGTGCT
TCGTTCACCAATCGCCCACCTCTC--------------------------TCTCTA----------------TCTCTCCG
ATCTGTCGGGATTTTCACGAGGAGGATCTAGCACGCGCTGGAGATGGTGGCGCCGATCGCGGTGGCGTCGGCGGGGCTGG
GGATGCTGGCGGGGGTGGCGATGGCCAACAGGTCCATGCAGGAGGGGAGGCCCGCGGCGGCGGTGCGTTGGCCGCTGCTG
CAGAAGCCGCGATGCGCCACATGCAGCGGGACGGGAAGGGTGGAGTGCCTGTGCTCCCGGTGGTCCGACGGGGACGGCTC
AGGCTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGCGGGTCCGGGACCGGACGCCGGGCGCCCG
TGCGGATTGCCACCGCCTCCGCCACGCCACTCCGGCCACGGGCGAGCACGCGGTGATCGGCCCAGCTCGCGATCCGCGGC
CGTGCGGCTCGATTTTGTTTTCTGGAGTTAGAAATATTTGTAATAGTA--------TGTTAT-----AGAACAGAATAGG
GGTTTGATAGAATATACTGCAAGTGAATTAGTAATGATTCCTGCCGGGCTCTTGCTGTTACTGAATCGAGCCTTGTCGCG
ATGAATATCTGCGCCTGAATATCTCGTGACTTCGGCCGGATGAATTTCCAGGGAATTGTTGTGCTGAAAGAATTTTTACG
AGCAAAAAATGTGTCGATCCAGGCATCTGTCAAACTTGCA-----AGTTTTGCAGAGCGCTGCTAATGCTAAAACTTGCA
GAAGAGGATGAGCTGGGCAGCCGAGCCAC------ACACACGCCTACACGCCAGACCAGCACTCCGATCAGTCA------
-------TCATCCCAAGCCAGTGCCGTCCGCTATACGTTCCCCCGAGATCTTTTCCAGTGTGACTCA-------------
-----GTGCCACAAGAATTTCCTCCTTCCACCGTTCGGAACGCTT-GAATTTTCTCCTTTACTGCGTG--CA---AGTAG
TACTAACGACATGACAGACACGGACATGTTTGAATTAGCCGGTGAATGGTGTGCAATCTTTAATAAGTAGGGTGGCACAT
CCTTGAGCTGTTGCACCACTGAAACCGACCAGCAACCGCATGCTCACCTGTCAATTGCGCCCACGGTTCCATAACACAAT
TGTCTGCCGCCAAATCAGTT-----------------------------ATCAATGGCAACACCCGCAATTTATTTGGCC
AACACATGTCCCTTTAACATTTATTTTATATATATAATCTGTATATGTACCCGACTGTTCAGCAGGCTGTAGTGGTTATT
TTATTACCCTC-AAACACAAAGATGGGCGTTGAGTTAAGTTATTAGGTGAACACATGAAACGCAATATCCAAAGGAATGG
ACCAAGTCTTTGCTGGAGCTCATCTGAAATGGTTAATATATTATGCAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--S-----------------------------------------------------
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---------------------------------------------------SS---------------------------
----------S-----S---------------------------------------------------------------
------------------S-------------------------------------------------------------
----------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
----------SS----------------------S---------------------------------------------
----------------------------------------------S---------------------------------
-----------------------------------------S--------------S-----------------------
---------------------------------------------------S-----------------S----------
----------------------------S---------------------------------------------------
-S------------------------S------------S--------------S-------------------------
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--------------------------S------------------------------------------S--S-------
--S-------SS-----------------------------------------------------------------S--
----S------------------------SSSSSS---------------------------------------SSSSSS
SSSSSSS------------------------------S------------------------------------------
--S------------------------------------------S-----------S-------S------SSS-----
---S----------------------------------S-----------------------------------------
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-----------------------------------SS-S-----S-----------------------------------
----------------------------------S-----S------------------------------S--S-----
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-------S----------------------------------------
>forward_52
--------------------------------TCGATTGAGGCATCGGTAGC----------------------------
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>reverse_1362
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-CCGGCGCTCGATTTTGTTTT-----------------------------------------------------------
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