>input_sequence_83571
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-----------------------------------------ATGGCCAGCTTCGCCTCCCAGCTCCTGGACGTGTTCTAC
GACCTCGTCCAGCGCGTCACCGGCTACACCGTCCGCCCCGACGACGACAAGGGTACGTACGCGCCCCCGCTCTGGAAACA
GTATTGTTCATGTTGCAGTCAGCGTTATCTTGTACTCCTAGT-TGCTCATGATTTGCTACGTGTGTGCGCTTCTTTCCGT
TCTGCAGATGCACAGAAGCCCAGCAAGTTGGCATTTGTGGAGAAATTCCAGGCCGAGGAAGTAGTTGAGATCAGGTCCAG
GAATCTCCCGGTG---TCGGGGGGCTCAGGCGCCCAGGTCAACCTGGACGGTATGTAG----------------------
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>chr2A_1_TraesCS2A01G523800
GAATGGCTTGAAATTAATTTCCTGAATCAACGCACATGAACGAGCAAAATAATGGTGTCTTAATTATGCTGACGTGGCTC
TGTAGGGTTAAGTATGACGACTATCGTTTGCCTAAGAAAAATATGCGTAGTGGTGTGGTTGCAGGCTGCTGTAGGTCTTT
TCTTGGAGACCTCAGTTCGATTCCAAAACGCAGCAATTTTTTTCTCGCCTATGATGGCAGTTTTGCGGAAGAAAAAAGAA
GAATTGGGAGCGATTCAGTCGTTCTTGCATGTTGCAAACGACCAGTCGACTGGTCGTTAGATTTCTCGTTCATAATATAC
TAATTTGATATCATATATGGTACGACTCTTTTGTATATAGTTGGTCAAAATTTTATAACTTTGACTTATGACAAAACATA
GAAATACGCTTACTCGCCGATGAAGGGAGTACATGTTTTTTTCATACGTACATTAAATACAATATATAGTGATACTTGGT
CATCTGGTGGGGTTCCCAAATTTTTGGGAGGTCCTGTGCGGTCGGCCACCTTGGCCTCCTCCATTGACAAGCTGCTTCTT
GGAATAGAGATATGTTATGGTTTTTTTTTTTTGGATGCAACGCTGGGCATTGTTGCTACTTGCTAGTAATAGGGCACATG
TGCACCAGAGATCTGTGTAGTCACAAACCGTATTATACACATCGTTACACGTGCTGGCCGGGCCAGAA-------ACCGA
AAAATTCTGATTCTCTGCATCCGATAACTTAAAGGAATCTGAACTATACTTTGCGCTCTGAATGCACGTACTACGTCCCA
---GCTCGCACGCGCTCGTCTGAAGAACGC--GTGCGCGCGGTCGGTTGGTGACACCGCGCCGTCGCCGTGCATAAATAC
CTCGCCCCGGCGATGGCGATAGGACTCACTCA----C---CACTCACAGACAGCTCAAAGCAAGTAAGCAGAGAAAGCAG
TAAGACGTTAGCAACTAG----------------------------------ACTGTCCGAGTAGCTCAC----------
-------------TGAACTACCCAGCTCCAGC-----TCCCATGGCCAGCTTCGCCTCCCAGCTCCTGGACGTGTTCTAC
GACCTCGTCCAGCGCGTCACCGGCTACACCGTCCGCCCCGACGACGACAAGGGTACGTACGCGCCCCCGCTCTGGAAACA
GTATTGTTCATGTTGCAGTCAGCGTTATCTTGTACTCCTAGT-TGCTCATGATTTGCTACGTGTGTGCGCTTCTTTCCGT
TCTGCAGATGCACAGAAGCCCAGCAAGTTGGCATTTGTGGAGAAATTCCAGGCCGAGGAAGTAGTTGAGATCAGGTCCAG
GAATCTCCCGGTG---TCGGGGGGCTCAGGCGCCCAGGTCAACCTGGACGGTATGTAGAGCAAGCTGGCCTCTGCTGCTA
ACAGTTTTGAGACGTGGGC-ATGGCCGTG-TGGTTCCCGTAGCCTTAA-GATGGTGTGCCGCCTGCTGGCGTTTTCAAAA
CTTCAGATAATAAACTCGTGTGTGTGTGCGTGCGTGTTCCTGTAATGTTTCAGTTTGTCACGTCCTTTTGTACTGCATGT
GTTGTTCTGAACTCCATGATCGAGTTGTGTGGGTGTTGTTCTGTTGT------GTGACTTTCCCTCTCTTTTTTCCTTTA
TTATT--TTTTGCGAGTCTGTTGGGTGTAAGCTGTAAGGCTAATAAAGCAGTAACTTGATGAGCATGTTTGTTAAGTTTC
TACCGATCAAGTGTTCGCTTTTCCGAGTACTGTCGGATTGGTTCCTTTTCTGTTTAACTAATTACTCGGTGAAGAAACAC
GGATGCTTTAAAAACCTAAAGGACTGAGAAACAATGGTTGGATCGACTCGACATGTGGCGTCCATCTTTCTTTTGGATTT
TTGACATCAAACCTCTTTATTAGCTTTCAGTAGTAGTTGCATCATCTATAAGAAGAGGCATGGTACTGTCGGGCGGTTCG
ACAGAGTGGAACTTCTAGGCAAACTAGCAAGTTCATGAGCTAACATTGTTTGTCTTCACGGCCATAGCAATCTATCATCT
AACACCCCTTGATATCCCGGTTGAGGTGCGAAAGAAAATCGATAGCCTGAGACGTGCCTATCTATGGGCAGGCTGCGACA
AGGTGTCTGGAGGCAAATGTAAGGTTAGCTGGAACCTTGTCTGCAAACCCAAGATTTTCGGCGGCTTGGGTGTGCTAAAC
CTCCAAAATTTTGCCGCCGCCCTTCGACTACGTTGGCTTTGGTTCGAGTGGGTTGACCTCCCCAAAACTTGGGCTGGAAT
GGAGACACCCTGTAGCAATGCTGACAGAGATCTCTTTGCGACGTTCACGAGTGTGACCATTGGTGATGGTAAAAAGGCAA
GATTCTGGGAATCGTCATGGCTGAATGGC
>chr2D_309
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--------------------------------------------------------------------TTCATAATATAA
TAATTTGATGTCATATATGGTACTACTCTTTTCTATATAGTTGGTCAAAATTTTATAACTTTGATTTATGACAAAAGGCA
CTTAT--------TCGCGGACGAAGGGAGTACATGTTTTTTGCGTACGTACATATAAATAGA-ATATAGTGATACTTGGT
CATCTCGTGGGGTTCCCAAAATTTTGGGAGGTCCTATGCGGTCATCCACCTTGGTCTCCGCCATTGACAAGCTGCTTATT
GGAATAGAGGTATGTTGTATTTTTGTTCTTCGGTTTGCAACGCCGGGCATGTTTGCTAG----TAGTAATAGGGGA-ATG
TGCACCAGAGATATGTATAGTCACCGACCGTATGATA--CACCATTACACGTGCTGGCCGGGCCAGAACCCAGAAACCGG
AAAATTCTGATTCTCTCGATCCGATAACTCGGTGGAATCTGAACTATACTTTGCGTTCTGAATACACATACATCCCAGCG
TGCGCTCGCACGCGCTTGTCTGAGGAACGC--GTGCGCGCGGTCGGTTGGTGACACCGCCCCGTCGCCGTGTATAAATAC
CTCGCCCCGGCTATGGCGATAGGACTCACTCAGTCAC---CACTCACAGACATCTCAAAGCAAGTAAGCAGAGCAAGCA-
------GTAAGCAGGCAGCTGCAGACGACAGCAGCTTAGCACTGTTCGTAGCACTGTTCGAGTAGCTCAC----------
-------------TGAACTACCCAGGTCCAGC-----TCCCATGGCCAGCTTCGCCTCCCAGCTCCTGGATGTGTTCTAC
GACCTCGTCGAGCGCGTCACCGGCTACAGCGTCCGCCCCGACGACGACAATGGTACGTACGAGCGCCG-CTCTGAAAACA
GTGTTGTTCATGTTGCAGTCAACATTATCTTGTAGTTGCTCAATGCTCATGATTTGCTACGTGTGTGCGCGTCTTTCCGT
TCTGCAGATGCACAGAAGCCCAGCAAGTTGGCATTTGTGGAGAAGTTCCAGACCGAAGAAGTAGTCGAGATCAGGTCCAG
GAATCTCCCGGTG---TCGGGGGGCTCAGGCGCCCAGGTGAACCTGGACGGCATGTAGAGCTAGCTAGCCTCTACTAAC-
----TTTTGAGACGTGGATAATGGCCGTG-GGGTTCTCGTAGCCTTAA-GATGGTGTGCCGCCTGCTAGCGTGTTCATAA
CTTCAGATAATAAACTGGTGCGC----GCGTGCGTGTTCCTGTAATGTTTCAGTTTGTCACGTCCTTTC-TACTGTGTGT
GTTGCTCTGAACTCCATGATCGAGTTGTGTGGGTGTTGTTCTGTTGT------GTAACTTTCCCTCT-TTTTTTCCTTTA
TTACT--TTTTGCGAGTCTGTTGAGTGTAATCTGTAAGGCTAATAAAGCAGTAACCTGATGAACATGTTTGTTAAGTTTC
TACCGATCAAGTGTTCGCTTTTCCGAACACTGTCGGATTGATTCCTTTTCTGTCTAACTAATTACTCGGTGAAGAAACAC
GGATGCTCTAAACACCTAATGGACTGAAAAACAATGGTCGGATCGACTCGACATGTGGCGTTCATCTTTCTTTTGGTTTT
TTGACATCAAACCCCTTTATTAGCTTTCAGTAATAGTTGCATCATCTATTAGAAGAGGCATGCTACTATCGGGCGGTTTG
ACAGAGTGGAACTTCTAGGCAAACTAGCAAGTTCATGAGCTAACATTGTTTGTCTTCACG--------------------
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>chr2B_620
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-----------------------------------------------------------TTGCTAGTAATAGGGCA-ATG
TGCACGAGAGATCTTTGTAGTCACCAACCGTATTATACACACCGTTACACGTGCTGGCCGGT-------CCAGAAACCGA
TAAATTCTGATTCTCTCGATCCGATAACCCAAAGGAATCTGAACTATACTTTGCGTTCTGAATACACGTACTACGTCCCA
---GCTCGCACGCGCTCGTCTGAAGAACGC--GTGCGCGCGGTCGGTTGGTGACACCGCGCCGTCGCCGTGTATAAATAC
CTCGCCCCGGCGATGGCGATAGGACTCACTCA----C---CACTCACAGACATCTCAAAGCAAGTAAGCAGAGCAAGCA-
------CTAAGCAGTA---------------------------------AGCACTGTTCGAGTAGCTCTC----------
-------------TGAATTACCCAGCTCCAGC-----TCCCATGGCCAGCTTCGCCTCCCAGCTCCTGGACGTGTTCTAC
GACCTCGTCGAGCGCGTCACAGGCTACAGCGTCCGCCCCGACGACGACGAGGGTACGTACGCGCGCCCGCTCCGAAAACA
GTATTGTTCATGTTGCAGTCAGCGTTATCTTGTACTCCTAGT-TGCTCATGATGTGCTACGTGTGTGCGCATCTTTCCGT
TCTGCAGATGCACAGAAGCCCAGCAAGTTGGCATTTGTGGAGAACTTCCAGGCCGAGGAAGTAGTTGAGATCAGGTCCAG
GAATCTCCCGGTT---TCGGGGGGCTCAGACGCCAAGGTGAACCTGCTCGGTGCGTAGAGCAAGCTGGCCTCAGCTGCTA
ACAGTTTTGAGACGTGGAC-ATGGCCGTG-TGGTTCTCGTAGCCTTAAAGATGGTGTGCTGCCTGCTCGCGTGGTCAAAA
CTTCAGATAATAAACTTG---------------GTGTTCCAATAGTGTTTCAGTTTGTCATGGCCTTAC-AACTGTGTGT
TGCTATCTGAACTCCATGGCCGAGTTGTGTGGGTGTTGTTCTGTTTAGTGCTAGTTCCCTTCTCTCC-TTTTTCCCTTTT
TGTTATGTTTTGATAATCTGTTGAGTGTGAGTTGTAAGGCTAATAA----------------------------------
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>chr2D_811
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--------------------TGAAGAACGCCGGTGCGCGTGGTCGGTTGGTGGCGCCGCGCCGT------GTATAAATAC
CGTCCCCCGGCGATGCCAACGACACTCACTCAACAGCCGCTACTCACAGCT-----------------CAAAGCAAGCA-
------GTAAGCAGCTAG----------------------------------ACTGTTCGATTCGCTAAGC---------
---------AGCTTGAATTACCCAGCACCAGCTTCGATCCCATGGCCAGCTTCGCCTCCCAGCTCCTGGACGTGTTCTAC
CACCTCGTTGAGCGCGTCACCGGCTACAGCGCCCGCGCCGAGGACGACAAGGGTTCGTAAACA------CTCTGAGAACG
CCACAGCTGGAGTA---------------TTGCACTACTAGT-TGCTAATGATTTGCTACGTGTGT--CTTCCTGT----
--TGCAGACCTACCGAAGCACAGCAAGTTGGCAACAACGGAGGTTTTCCGGACGGAGGAAGTTGTCGAGATCAGGTCCAG
GAATCTCCCGGTTGTATCAGGAGGGTCAGGCGCGCAGGTCAACATGGACGGTATGTAGAGCTAGCTAAGCCTCT------
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>chr2B_811
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--------------------TGAAGAACGCCGGTGCGCGTGGTCGGTTGGTGGCGCCGCGCCGT------GTATAAATAC
CGTCCCCCGGCGAGGGCAACATGACTCACTCAACAGCCGACACTCACAGCT-----------------CAAAGCAAGCA-
------GTAAGCAGCTAG----------------------------------ACTGTTCGATTAGCTAAGCTAGTGGCGG
TAGCACAGTAGCTTGAATCACCCAGCACCAGCTCCGATCCCATGGCCAGCTTCGCCTCCCAGCTCCTGGACGTATTCTAC
GACCTCGTCGAGCGCGTCACCGGCTACAGCGCCCGCGCCGAGGACGACAAGGGTACGTAAACA------CTCTGAAAACG
CCACAGCTGAAGTA---------------TTGC---ACTAGT-TGCTGATGATTCGCTACGTGTGTGTCTTCCTGT----
--TGCAGACCTACAGAAGCACAGCAAGTTGGCAACAACGGAGGTTTTCCGGACGGAGGAAGTTGTCGAGATCAGGTCCAG
GAATCTCCCGGTTGTATCAGGAGGGTCAGGCGCGCAGGTCAACATGGATGGCATGTAGAGCTACCTAGCCTCTACGTAC-
----GGCAGAGACATACATAACGGCCGTGTGGTTTCTCGTAGCCTCAA-GATGGTGTGCGGCCTGCTGGTGT--------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S
---------S-------------S--------S-------------------------------S-----------SSS-
SSS--SSSSSSSS----S--S--------------------S-S---------SS--SSSS-S-----------------
-----S--------------S--------------S-------SS---------S----S-----------------S--
---------S------S-SS----S--S--SS-SS--------S------SS------S-----------------S---
------------------------S----------------S--------------------------------------
----------------SS-----------S-------------------------S-------S----------------
-----------------------------------------------------------------------S--------
----------------------------------------------------S--------------------S-----S
SSSSSS--S----S-------------------------------------------S----------------------
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---------S------------------S-----------------------------------S---------S-----
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--------------------------------------------S-----------------------------------
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-----------------S------------------S-----------------------------------S-------
----------------S---S-SSSSS-----------------------------------------SS-----SS---
----S--------------------------------------------------S-----------S------------
-----------------------S-------------------------------S------S-----------------
--------------------------SS------------S------------S--------------------------
-------S----S------S-------S----------S----------------------S--------------S---
-------------S------------------S----------------S------------S----S----------S-
------------------------------------------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_47
---------------------------CAACGCACATGAACGAGCAA---------------------------------
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>reverse_2137
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--------------------------------------------------------CCTATCTATGGGCAGGCTGC----
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