>input_sequence_83568
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----------------------------------------ATGGTGGCCCCGATCGCGGTGGCGTCGGCGGGGCTGGGGA
TGTTGGCGGGGGTGGCCATGGCCAACAGGTCCATGCAGGAGGGGAGGCCCGCGGCGGCGGTGCGGTGGCCGCTGCTGCAG
AAGCCGCGGTGCGCCACATGCAGCGGGACGGGAAGGGTGGAGTGCCTGTGCTCCCGGTGGTCCGACGGGGACGGCTCAGG
CTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGCGGGTCCGGGACCGGACGCCGGGCGCCCGTGC
GGATCGCCACCGCCTCCGCCACGCCACTCCGGCCACGGGCGAGCACGCGGTGA---------------------------
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>chr2A_1_TraesCS2A01G282600
GCTCGTCGTTGGTTGGTGCTATGGACGATGACTAATGTGGAGGCGCCAAGTTATACCTGCAACTGACTGGTGCTACACTC
GTTGGCTCCTAT-GCCTATAGAGGTGATAAGTCATACATGTTGTTGTTGGACCGAAAGTGGTGTGACAATGATGGGAAGT
GGTATGGAGCATCTTTGTCTTCCGGTATCTCCTACAGAGGTAATCGATCGAGACGTCGGTAGCCAGTCAAGGGTA-ATGT
AAGATGCGGCTTCAACAACAAGTTTGCGTAATCCGATGAAAACACGAGATCTCTGATCAGGCTACGTTGATGCGTGCTTG
CGTCGTGCCCTTGCTGAAAGTGGT-GGACCGAAACTCAATTTGGGGATAAAAGTCCCGGGACTGGCCTATAGTTGGACTC
GCCACTATCGGCGCACGTGCGGCGTTTTCTTT------------------------------------------------
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----------------------------------------------------------------GGCATTCTACATTTCT
CATTAATTATGTCCAACTCACAATGTTGAAAATAGGCATGTCACCTTTGTACAATTTGCAACAAAGCATCCTAGAAGTTG
TTTCGTAGATGGAAAATTGC---TTGTAACGTAGCCATCAGCTTTAAAAAGTGTTCCTCCACGATCGATCCAAGTTTATC
TTGAGGAATAATGATGCGATTGTTAGGAAATTTCCGGGCAAAATGGTAGCCAGTGCAGTGCAGAGTGCAGACCAGCAGGG
GCGGCTAGGCAAGGCGACCACAGTAATAAAGGGAGGAAAGCGACGCTGCCGACTTTGCCTCCCCCACTCCAATAATCGCT
CTCTAATTAATCACCATTCTCCCACTAATCAATTTTGCTTACCCCACCCACCGTGACCGCGCTGATTGACGAGGCGGCCG
GACACACCCCTCTATAAATCTCGGTCTCCCTCTCGCTCGCTTACTGCCTTCCTAGCGTGCTTCGTTCACCAATCGCCAAC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC------------------------------------------CGATC
TGTCGGGATTTTCACGAGGAGGATCTAGCACGCGCCGGAGATGGTGGCCCCGATCGCGGTGGCGTCGGCGGGGCTGGGGA
TGTTGGCGGGGGTGGCCATGGCCAACAGGTCCATGCAGGAGGGGAGGCCCGCGGCGGCGGTGCGGTGGCCGCTGCTGCAG
AAGCCGCGGTGCGCCACATGCAGCGGGACGGGAAGGGTGGAGTGCCTGTGCTCCCGGTGGTCCGACGGGGACGGCTCAGG
CTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGCGGGTCCGGGACCGGACGCCGGGCGCCCGTGC
GGATCGCCACCGCCTCCGCCACGCCACTCCGGCCACGGGCGAGCACGCGGTGATCGGCTCAGCTCGCGATCCGCGGCCGC
GGCGCTCGATTTTGTTTTCTTGAGTTAGAAATAGTAGTACTTGTAATACAGTGTGTTATAGAACAGAACCGAATAGGGGT
TTGATAGAATATA--GCAAGTGAATTAGTAATGATTCCTGCCGGCCTCTTGCTGTTACTGAATCGAGCCTTGTCGCGATG
AATATCTGCGCCTGAATATCTCGTGACTTCGGGCGGATGAATTTCCAAGGAATTGTTGTGCTGAAAGAATTTTTACGAGC
AAGGAATGTGTCCATCCAGGCATCTAGCCAACCAACTTGGTCAGTTTTGCAGAGCGCTACTGGTGCTAAAACTTGCAGAG
GA---TGAGCTGGGCTGCCGAGCCACACAC------ACGCCTACACGCCAGAC----------------CATCATCCCAA
GCCAGTGGCGTCCGCTATACGTTCCCCCGAGATTTTTTCGAGTGTGACTCAGTTCCACCAGTGCTACGTGTGCCACAAGA
ATTTCCTCCTTCCACCGTTCGGAACGCTT-GAATTTTCTCCTTTACTGCGTATACA---AGTAGCACTAACGACATCACA
GACATGGACATGTTTGAATTAGCCGGTGAATGGTGTGCGATCTTTAATAAGTAGGGTGGCACATCCTTGAGCTGTTGCAC
CACTGAAACCGACCAGCAACCGCATGCTCACCTGTCAATTGCGCCCACGGTTGCATAACACAATTGTCTGCCGCCAAATC
AGTTGGCTCTCTGCAGAGTCGTCCTCCATCCAAATCAATGGCAACACCCGCAATTTATTTGGCCAACACATGTCCCTTTA
ACATTTATTTTTTATATATAATCTGTTTATGTTCCCGACTGTTCAGCAGATTGTAGTGGTTATTTTATTGCCCTCAAAAC
ACAAAGATGAGCGCTGAGCTAAGCTATTAGGTGAACACATGAAACGCAATATCCAATGGAAGGGACCAAGTCTT-GCTGG
AGCTCCTCTTAAATGGTTAATATATTATGCAGTTGCGATAAGCAT
>chr2D_1
GCTCGTCGTCGGTTGGTGCTATGGACGATGACTAATGTGGGGGTGTCAAGTCATACCTGCTACCGACTGGTGCTACGCTC
GGTGGCTCCTATGCCCTATAGAGGTGATTAGTCATACCTGTTGTTGTTGGATCGAAAGTGGTGTGACTGTGACGGGAGGT
GGTATGGAGCATCTTTGTCTTCCGGTATCTCCTGCAGAGGTAATTGATCGGGGCGTCGGTAGCCGGTCAAGGGTA-ATGT
AAGATGCGGCTTCAACAAGAAGTTTGTGTAATCCGATGGAAACACGAGATCTCTGATCAGGCTATGTTGATGCGCACCTG
CGCCGTGCCCTTGCTAAAGGTGGT-G-ACCGAAGCTCACTTTGGGGATAAAAGTCTCGGGACTGGCCTATGGTTGGACTC
GTCACTATCGGTGCACGTGCGGCGTTTTTTTCTTGAAGGCTTACCCTAGGAGATATGTACGAGACATGTACTTTTGGTTT
GTTT-CGGTCTATTAACATAAGGTTAGTGGTTAACTTGTGAAGCTACTGCCGCGTGGCATGTGACCTTCGGGTTTCTTTT
TTA-ATCGAATTTATTATGCTGTTGGATTTTCTAATAATATATGGCTCCGTGCATCACTCAATGCAGAAGTCGGGGTCAT
CCTTCTGTTTGAAAAAAAACACTTTTAATCAACGCATGTTTGGCAAAATGAAAATACAATACTAGGCAGTCTACATTTCT
CATTAATTATGTCCAACTCACAATGTTGAAAATAGGCCTGTCACCTTTGTACAATTTGCAACAAAGCATCCTAGAAGTTG
TTTCGTAGATGGAAAATTGC---T---AACGTAGCCGTCAACTTTAAAAAGTGTCCCTCCGCGATCGATCCAAGTTTATC
TTGAGGAATAATGATGTGATTGTTAGAAAATTTCCGGGCAAAATGCTAGCCAGTGCAGTGCAGAGTGCAGACCAGCAGGA
GCGGCTAGGCAAGGCGACCACAGTAATAAAGGGAGGAAAGCGACGCTGCCGACTTTGCCTCCCCCACTCCAATAATCGCT
CTCTAATTAATCACCACTCTCCCACTAATCAATTTTGCTTACCCCACCCACCATGACCGCGCTGATTGACGAGGCGGCCG
GACACATCCCTCTATAAATCTCGGTCTCCCTCTCGCTCGCTTACTGCCTTCCTAGCGTGCTTCGTTCACCAATCGCCCAC
CTCTCTCTCTA----------------TCTCTC------------------------------------------CGATC
TGTCGGGATTTTCACGAGGAGGATCTAGCACGCGCTGGAGATGGTGGCGCCGATCGCGGTGGCGTCGGCGGGGCTGGGGA
TGCTGGCGGGGGTGGCGATGGCCAACAGGTCCATGCAGGAGGGGAGGCCCGCGGCGGCGGTGCGTTGGCCGCTGCTGCAG
AAGCCGCGATGCGCCACATGCAGCGGGACGGGAAGGGTGGAGTGCCTGTGCTCCCGGTGGTCCGACGGGGACGGCTCAGG
CTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGCGGGTCCGGGACCGGACGCCGGGCGCCCGTGC
GGATTGCCACCGCCTCCGCCACGCCACTCCGGCCACGGGCGAGCACGCGGTGATCGGCCCAGCTCGCGATCCGCGGCCGT
GCGGCTCGATTTTGTTTTCTGGAGTTAGAAATATTTGTAATAGTA--------TGTTAT-----AGAACAGAATAGGGGT
TTGATAGAATATACTGCAAGTGAATTAGTAATGATTCCTGCCGGGCTCTTGCTGTTACTGAATCGAGCCTTGTCGCGATG
AATATCTGCGCCTGAATATCTCGTGACTTCGGCCGGATGAATTTCCAGGGAATTGTTGTGCTGAAAGAATTTTTACGAGC
AAAAAATGTGTCGATCCAGGCATCTGTCAAACTTGCA-----AGTTTTGCAGAGCGCTGCTAATGCTAAAACTTGCAGAA
GAGGATGAGCTGGGCAGCCGAGCCACACAC------ACGCCTACACGCCAGACCAGCACTCCGATCAGTCATCATCCCAA
GCCAGTGCCGTCCGCTATACGTTCCCCCGAGATCTTTTCCAGTGTGACTCA------------------GTGCCACAAGA
ATTTCCTCCTTCCACCGTTCGGAACGCTT-GAATTTTCTCCTTTACTGCGTG--CA---AGTAGTACTAACGACATGACA
GACACGGACATGTTTGAATTAGCCGGTGAATGGTGTGCAATCTTTAATAAGTAGGGTGGCACATCCTTGAGCTGTTGCAC
CACTGAAACCGACCAGCAACCGCATGCTCACCTGTCAATTGCGCCCACGGTTCCATAACACAATTGTCTGCCGCCAAATC
AGTT-----------------------------ATCAATGGCAACACCCGCAATTTATTTGGCCAACACATGTCCCTTTA
ACATTTATTTTATATATATAATCTGTATATGTACCCGACTGTTCAGCAGGCTGTAGTGGTTATTTTATTACCCTC-AAAC
ACAAAGATGGGCGTTGAGTTAAGTTATTAGGTGAACACATGAAACGCAATATCCAAAGGAATGGACCAAGTCTTTGCTGG
AGCTCATCTGAAATGGTTAATATATTATGCAGTTGCGATAAGCAT
>chr2B_11
----------GGTTGGTGCTATGCACGATGACTCATGTGGAGGCGCCAAGTCATACCTGCTACCGGCAGGTGCTACGCTC
GGTGGCTCCTATGGCCTATAGAGGTGATAAGTCATACATGTTGTTGTTGGATCAAAAGTGGTGTGACAGTAAGGGGAGGT
GGTATGGATCATCTTTGTCTTCAA-------------AGGTAATCGATTGAGGCATCGGTAGCCGGTCAAGGGATGATGT
AAGATGAGGCTTCAACAACAAGTTTGCATAACCCGATGGAAACACGAGATCTCTGATAAGGCTATGTCGACGCGCGCCTA
CAGCGTGCCCTTGCTGAAGGTGGTGG-ACCAAAGCTCACTTTGGGGATAAAATTC-CGGGACCGGCCTATAGTTGGACTC
GCCACCATTGGCACACATGCGGTGTTTTCTTCTTGAAGGCTTACCCTAGGAGATG-----------TGTACATTTGGTTT
TTTTTCGGTCTATTAACATAGAGTTAGTGGTTAATTGGTAAAGCTACTTTCCGTCGCG----GACCTTCAGCTTTCTTTT
CCGGATCAAATTTATTCGGTTGTTGGATGTTTTAATAATATATGGCTCCGTGTATCACTTAATGCAGAAGTC-GGGTCAT
CCTTCTTTTGAAAAGAAAAGACATTCT-----------------------------------------------------
------------------------------------------ACATTTGTACAATCTGCAACAAAGCATCCTAGA-----
---------TGGAAAATTGCTTGT---AACGTAGCCATCAGCTTTAAAAAGTGTTCCTCCACGATCGATCCAAGTTTATC
TTGAGGAATAATGATGTGATTGTTAGGAAATTTCCGGGCAAAATGCTAGCCAGTGCAGTGCAGAGTGCAGACCAGCAGGG
GCGGCTAGGCAAGGCGACCACAGTAATAAAGGATGGAAAGCGACGCTGCCGACTTTGCCTCCCCCACTCCAGTAATCCCT
CTCTAATTAATCAC---TCTCCCACTAATCAATTTTGCTTACCCCACCCACCATGACCGCGCTGATTGACGAGGCGGCCA
GACACACCCCTCTATAAATCTCGGTCTCCCTCTCGCTCGCTTACTGCCTTCCTAGCGTGCTTCGTTCACCAATCGCCTAC
CTCTCTCTCTC----------------TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGATC
TGTCGGGGATTTCACGAGGAGGATCTAGCACACGCTGGAGATGGTGGCGCCGATCGCGGTGGCGTCGGCGGGGCTGGGGA
TGCTGGCGGGGGTGGCGATGGCCAACAGGTCCATGCAGGAGGGAAGGCCCGCGGCGGCGGTGCGGTGGCCGCTGCTGCAG
AAGCCGCGATGCGCCACATGCAGCGGGACGGGAAGGGTTGAGTGCCTGTGCTCTCGGTGGTCCGACGGGGACGGCTCAGG
CTGCCGGACCTGCGCGGGCACCCGGAGGATGCCTTGCCGGAGCTGCGGTGGGTCCGGGACCGGACGTCGGGCGCCCGTGC
GGATCGCCACCGCCTCCGCCACGCCGCTCCGGCCACGGGCGAGCACGCGGTGATCGGCCCAGCTCGCGATCCGCGGCCCC
GGCGCTCGATTTTGTTTTCTGGATTTAGAAATAGTAT---TTGTAATACAGCGTGTTAT-----AGAACAGAATAGGGGT
TTGATAGAATATA--GCAAGTGAATTAGTAATGATTCCTGCCGGGCTCTTGCTGTTACTGAATCGAGCCTTGTCGCGATG
AATATCTGCGCCTGAATATCTCGCGACTTCGGGCGGATGAATTTCCAAGGAATTGTTGTGCTGAAACAACTTTTACGAGT
AAGGAATACGTCCATCCAGGCATCTGGCCAACCAACTTGGTCAGTTTTGCAGAGCGCTGCTAGTGCTAAAACTTTC---A
GAGGCTGAGCTGGGCTGCCGAGCCACACACGTACACACGCCTACACGCCAGACCAGAACCCCGACCA---ATCATCCCAA
GCCAGTGGCGTCCGCTATACGCTCCCCCGAGATCTTTTCCAGTGTGACTCAGTTCCACCAGTGCTATGTGTGCCACAAGA
ATTTCCTCCTTCCACCGTTCGGAACGCTTTGAATTTTCTCCCTTACTGCATG--CAAGTAGTAGTACGAACGACATCACA
GACATGGACATGTTTGAATTAGACGGTGAATGGTGTGCAATCTTTAATAAGTAGGGTGGCACATCCTTGAGCTGTTGCAC
CACTGAAACCGACCAGCAACCGCATGCTCACCTGTCAATTGCGCCCACGGTTGCATAACACAATTGTCTGCCGCCAAATC
AGTTGGCTCTCTGCAGAGTTCTTCTCCAACCAAATCAATGGCAACACCCGCAATTTATTTGGCCAACACATGTCCCTTTA
ACATTTATTTTATATATAAAATCTCTATATGTACCCGACTGTTCAGCAGGCTGTATTGTTTATTTTATTACCCTC-AAAC
ACAAAGATGGGCGTTGAGCTAAGCTATTAGGTGAACACATGAAACGCAATATCCAAAGGAATGGACCAAGTTTTTGCTGG
AGCTCATCTGAAATGGTTAATATATTATGCAGGTGCGATAAGCAT
>SNPs
---------S-----------------------------------------S--------S--S------------S---
-S-------------------------------------------------S----------------S---S----S--
---------------------------------S------------------S-----------S---------------
--------------------------------------S-------------------------S---------S--S--
--S---------------S-------S------S----S----------------S------------------------
-------------------------------S------------------------------------------------
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--------------------------------------------------------------------S-----------
-------------------------------------S------------------------------------------
------------------------SSS-----------------------------------------------------
----------------S----------------------------S----------------------------------
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----------------S-----------------------------------S---------------------------
-----------------------------------------------------------------------------S--
-----------SSSSSSSSSSSSSSSS-----------------------------------------------------
-----------------------------------S------------S-------------------------------
--S-------------S---------------------------------------------------------------
--------S-----------------------------------------------------------------------
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----------------------------------------------------------S---------------------
--------------------S------------------S-----------S-------SSSSS-----S----------
--------------------------------------------S-----------------------------------
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-------------------------S--------------------------------S--S-----------------S
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---------------------------------S-----S--------------------------S-------------
---------------------------------------------------SSS----------S---------------
--------------------------------------S-----------------------------------------
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-------------------SS-S-----S---------------------------------------------------
-----------S--------------S-----S----------------SS------------------S-----S----
---------S---S------------------------------------------S----S------------------
-----S---S-----------------------------------
>forward_1212
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------------------------------------------------------------------------TCGCCAAC
CTCTCTCTCTCT--------------------------------------------------------------------
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>reverse_2617
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--------------------------------------------------------TGGAAGGGACCAAGTCTTGC----
---------------------------------------------
