>input_sequence_83565
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-------------------------------------ATGCCAGGACATCACCATGGCAACATCAAGGATGTGACCATCA
TAGGCTTCCGTGCAGCAAAGAGCATGGTCGAACTAACTTGCCATATTCTTGAGAATGCAACATTACTCGAGTGTCTCACT
TTGGACGCGGTATATGATAATGGTAT---TGAGGAGGCTGATCGGTCTTGTGTCAACAAAAGTTACAAGTGCAGCCCTCT
GATTGGCAAGCGGATGATTGCTCAAGCCCACAAAGGCCTCTGGGCCATTGGAAGATATGTTGCAGACAAAGTTCCCTCCA
CCGTCAAGTTAAATGTTAAGAAGCTCTGCGAACGTTGCCATGTAATGGAATGA---------------------------
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>chr1D_1_TraesCS1D01G353000
CACATTACTAAGCTCCTTGAGATGCCGTCCCGACCTCACCTTCAGCAATGAAACACTGGGCCTGGATGGAAATGTGTATG
GAAGCAATAAACTTGCAAGGATTTTGCTCAAGAGAGTTGACCGCATCATGAAAAAACACCCAGGCATTGGAGTGAAGAAA
TTTGAACTTCACTATGGTGGTTCTTCCCTCAAATCTAGTTATCTCGACATGTGGCTTCAAACTGCAGTTACTCCAGGGAT
CGAAGAAGTCATACTTTTGGTGCCGGAACAACCCAACGAAACGTATCACAACTTCCCATGAGAGTCTTATTTCATAAGTC
CCAAATGCCCACTTTAAGTCCCTATAAGTCCCTCCTGTTTGG--------------------------------------
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--------------------TTTAGATGGGACTTATAGGGACTTTTTTAAGTCCCTAAATCAATAAGTCC----------
------------------------------------------------------------------------CTGGAAAC
AAACACCC------------------------------------------------------------------------
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------TCTCAAACTAAAGTTTTTGTTTTCGTTGTTTTATCCACGTGCAACAACCATGAGCTGGTTTCGAGATCTTATGG
GTTTCAGCTCTAGCCTACCCCAACTTGTTTCGGACTAAAGGCTCTGTTGTTGTTGTTGTCTTTTTTTAAGGGGCTAGTGA
TCATTAATGACAGCATCATTATTCATATAGCAGTAGTTATATGCCATGGAATATAGTGTAACCTTTTTTAGGCAATTC--
--TATATTTAACATAGACTTATTATTATATGTAGGACTTCAGTACGCCCATCTTACATGGCAAATTCCGCTGCCTCAAGA
ACTTAGAGATTGATTTTGACCATGAAGGACAGGGGGGCTTTTCTCCAGGCTATGATTATTTTTCTCTAGTTAATTTTCTG
GACGCTTGTCCTCTCCTGGAGACTTTTGTTTTGGGTGTAAGTCACTTTTCTCCCTCTAGCTTGCAACAACAACTGTATCC
TATCTCTG----------CATGTAACTATAGGGTGCACGTTGCTCCTTCACA--CAGGTATCGCAGAGGAACGTAGAGCA
TGAATTGATATC---TAAAGACTCAGTGTTGAGACGGATGCCAGGACATCACCATGGCAACATCAAGGATGTGACCATCA
TAGGCTTCCGTGCAGCAAAGAGCATGGTCGAACTAACTTGCCATATTCTTGAGAATGCAACATTACTCGAGTGTCTCACT
TTGGACGCGGTATATGATAATGGTAT---TGAGGAGGCTGATCGGTCTTGTGTCAACAAAAGTTACAAGTGCAGCCCTCT
GATTGGCAAGCGGATGATTGCTCAAGCCCACAAAGGCCTCTGGGCCATTGGAAGATATGTTGCAGACAAAGTTCCCTCCA
CCGTCAAGTTAAATGTTAAGAAGCTCTGCGAACGTTGCCATGTAATGGAATGATTGTGCCTGATGTTTCTCCGCTTCAAT
GAATTTCATGTTGCATAGATTGTTGCTTCGTATTGTCTTAAGGCAACTACAATGCGAATCACCAAACAGACGACACCAAA
TATCTGTGGATACGTCTGAACTTGCCACAGGT--GGGGCTCTAGGCATCCAACTATGGACACCAAA-TGTTCAAAT-ATT
TGAACGGAGCGAGCATAAAAACAAATAAAATTGAACAAAGTTCAATATATTTATAAACACACGGATGAAATTTAACC-GT
TGAAACTTAATTTAATCTAAACTAAACTATGTGAGATACTGGATAGATACAAGACCGTGAGCTTGTATACATGTCACTTT
TGAGGCCATTGCACCTTTGTCATCGTCTGCGCTGTTGCTCAAGTTGCCATTTGCGACACCTTTCTCGTCGTGGTTGCGCT
AGGGG-CAGAATGCTTGCCAG--------G--------CATCCCTGCTCGGTTGTCGCGCGCTCGCTCTTGAGACGTTTG
GCCGCCTTCGTCGCTTGGTGCACTTGGGCTTCATCGGCCCCGCTTGGAGGAGCTGGTGGTTGAGGCAACACTGATGGCGG
GAGCCTGACTCGGCGATGGTCTTGGACCGGTCGAGGGCCTAGGCCGACGCGACTTGGCTCTTCGCGAATGCCACCCGGTG
CTACGTGTTGCATTGCTCTCGATGCTCCGCCTTGGAGAGGCATTTGTTCGTGTCGAGGAAGACACACAGTTAGCTTGGAG
GTAGTACTGTACACATGATTGTGGCTAGGACGGTTGGGGGGGGGGACTCCTCCTCCTCCACAATGGCGAATGGACTCTAT
CGGTTGCGAACGAGGCGGGGAGGTCTGCTTCTCTTTCATGCGGTATTCGAATTGGATGTCGTGGCTACATGGTGGGGAGG
TCGGCTCCTCCTTTACACGGCATCTAATTTGGAAGTCGCGGTTGTGTGGAGGGGATGGCATTGTTAGACTGCGGTCGATT
AACAACCACTAGAGCGCGATCTTCGTTTGCCGCTT
>chr1B_1
CACATTACTAAGCTCCTGGAGATGCCGTCCCGACCTCACCTTCAGCAATGAAACACTGGGCCTGGATGGAAATGTGTATG
GAAGCAATAAACTCGCAAGGGTTTTGGCCAAGAGAGTTGACCGCATCATGAAAAAACACTCAGGCATTGGAGTGAAGAAA
TTTGAACTTCACTATGGTGGTTCTTCCCTCAAATCTAGTTATCTCGACAGGTGGCTTCGCATTGCAGTTGCTCCAGGGAT
CGAAGAAGTCATACTTTTGGTGCCGGGACAACCCAACGAAACGTATCACAACTTCCCATGCTCACTTTTATCCAATGGGA
GTGGAAGCTCGATTCAGCATCTCCGCCTCACCTCTTGTGCCTTCCATCCAGTGGCTGGTTTCGGCTGCTTGAGAAGGCTG
CATCTCGATGAAGTGGATAGAGAGCAGTTTTTCCTACCGCGTCCTACATGGTACCCCATATCAGAGGCGTCCATACGGGC
TCCAGTTTTCATGTGGATGTGTGCCTCGATGCGAATTTCAGCAGCTGGAACCAGGCGCTCGAACCTCAATCCTCTGCCCC
GAGGCCTACTCAATTTTAAATTTGGATGGGCCTGGTAGGTAACTGTAGACGACATGACTTGTCATGTGTCCATCCCCCAT
CAGACCCGCTGTACACTTTTGACAGCCAACGACGCGGGCACAGCACATTCAGCTCTTCCTCAGTTGTGGAAACTGGAAAC
AACTCTTGCTTCTTGGTTCTGCAAATCTTTTGATCCAGATTCGTATGAACATATTGATGTTGACATTGCAAATCGGCGCA
TTAAGATTTAATTTTTGTTGACCCCGCTGTCATGTTCGTGTTTCGGGAACTCTTTTTCCATCAACCTGTACCTTATATTG
TCCTATCCCAAGTCCAGAAACTTTTTACACGAACATGTGTTCTACCAGTCCATGGCTGAAGCGTAGTATGCCAAAATAAA
ATACAGTCCGGTGTACACCAAAATTAAATTCTCACATAAAAGCACTATTCAATTCTCGTCCACCCCTGGGTGGTGGTGAG
GGATAGTTGTGAGAATGTGTGGGGAGAAACCGATGAAGCCAGGCCACGAGATGAACAGTGCAGAAGAGGCCAAATAGGGG
CTGACCCCAACAACTAGCATGCAGAACCTAGCCCTAGCTAGGTCGAATTACTATTCACTTGCAACAGCGGAACTCGCTAA
CGATGCTGGCGCGGTTGGGAGAAGGTCACGTGAAGCTTTTCAGACGCACAAATCATGACGTGAATAGAGGGCCATGATAA
TGGGTACCGTGGAGCTCGAGCTAGGCTGGAACTTTCCGAAGTGGATATTACGGGTGATGAGTTATGGCGCCTTCTTTCCA
ATTCTCTTGCTATGGAGGAGCTGGATCTCAACAATTGCGATAAAATAACTTCCCTCAAGATACCTTGCCAGTTAGACAGG
CTCAACTCCTTGTCCGTGTCTAGTTGTTTTGCTCTGAAGGCGGTAGAAAATAAAGCTCCAAATCTTTGCAACGTTCAAAT
CGATGGCAACCTGGTACAACTTATACTTGGATATACATGGCAAGTGAAGGACCTAGAAGTGCTAGATTCCAGCAAACGTA
ATCTCGTTCGTTATGCTTGTGTTGATCTTCCATACATTATGCCAAATCTTGAAGCCCTCTACGTATCTTCAGTTGGTGAG
GTATATTCTCAAACTAAAGTTTTTGTTTTCGTTGTTTTATCCACGTGCAACAACCATGAGCTGGTTTCAAGATCCTATGG
GTTTCAGCTTTAGCATACCCCAACTTGTTTGGGACTAAAGGCT------TTGTTGTTGTATTTTTTTAAGGGGCGAGTGA
TCATTAATGACGGCATCATTATTCATATAGCCGTAGTTAT--GCCATGAAATATAGCATAACCTTTTTTAGGCAATAGTA
TATATATTTAACATAGACG---TATCATATGCAGGACTTCAGTACGCCCATCTTACATGGCAAATTCCACTGCCTCAAGA
ACTTAGAGATTGATTTTGACCATGAAGGACAGGGGGGCTTTTCTCCAGGCTATGATTATTTCTTTCTAGTTAGTTTTCTG
GACGCTTGTCCTCTCGTGGAGACTTTTGTTTTGGGTGTAAGTCACTTTTCTCCTTCTAGCTTGCAACAACAACAGTATCC
TATCTCTG----------CATGTAACTATAGGGTGCAGGTTGTTCCTTCACA--CAGGTATCACAGAGGAACGTAGAGCA
TGAGTTGATATC---TGAAGACTCGGTGTTGAGACGGATGCCAGGACATCACCATGACAACATCAAGGACGTGACCATCA
TAGGCTTCTGTGCTGCAAAGAGCATGGTCGAACTAACCTGCCATATTCTTGAGAATGCAACATCACTTGAGTGTCTCACT
TTGGACGCGGTATATGACAATGGTAT---TGAGGAGGATGATCGATCTTGTGTCAACAAAAGTTACAAGTGCAGCCCTCA
GATTGGCAAGCGGATGATTGCTCAAGCCCACAAAGGCCTCTGGGCCATTGGAAGATATGTTGCGGACAAAGTTCCCTCCA
CCGTCAAGTCAACTGTCAAGAATTTGTGCGAACGTTGCCATGCAATGGAATGATTGTGCCTGACATTTCTCCGCTTCAAT
GAATTTAATGTTGCATAGATTGTGACTTCGTATTGTGTTAAGGCAACTCCAATGCGGATCACCAAATCGAGGACACCAAA
TATCTGTAGACATGTCTGAACTTGTTGCGGGT--GGGGCGCTAGCCATCCAACCATGGACACCAAAATGTTCGAAACATT
TGAACGGAATGAGCATAAAACCGAATAAAATTGAATAAA-----------------ACAAACTGATAAAATT--------
------------------------------------TACTAAACAGATACTGGAAGGTGACCTTGTATACATGG--CTTT
TGAGGCCATTGGACCTCTGTCATTGTCTGCGCTGTTACTAGAGTTGCCGTTCATGGCACC-TTCTCTTCGTGGTCGCGCT
AGAGG-TAGAATGCCTGCTAG--------GCATTGCAGCATCCCTGCTCGGCCGCTGCCTCGAGCTC---GAGACGTTTG
GCTGCCTCCGTCGCTTGACGCACTTGGGCTTCACCAACCCCGCTTGGAGGAGCTGGTGGTTGAGGCGGCGCTGACGGCAG
GAGCCTGACTCGGCGATGGTCTTGGACCGGTCGAGGGCCTAGGCCGGCACGACCCGGCTCTTCCCAAACGCCGCTCGGTG
CTGCGTGTTGCATTG-----------------------------------------------------------------
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>chr1A_681
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----------------------TATTATATGCAGGACTTCAGTACGGCCATCTTACATGCGAAATTCCGCTGCCTCAAGA
ACTTAGAGATTGATTTTGACCATGAAGGACAGGGGGGCTTTTCTCCAGGCTATGATTATTTTTCTCTAGTTAATATTCTG
GACGCTTGTCCTCTCCTGGAGACTTTTGTCTTATATGTAAGTCACTTCTTCCCCTCTAGCTTGCAACATCAGTATCCTAC
TATCTGAA----------CATGTAACTCTAGGTT-CACGTTGTTCCTCCACA--CAGGTATCACAGAGGAACGTAGAGCA
TGAATTGATACC---TGAAGACTCGCTGTTGAGAC---------GACATCACCATGGCAAAATCAAGGATGTGACCATCA
TAGGCTTCTGTGCTGCAAAGAGCATGGTCGAACTAACCTGCCATATTCTTGAGAATGCAGCATTACTTGAGTGTCTCACT
TTGGACGCGGTATGTGATAATGGTGT---TGAGGAGGATGATCGGTCTTGTGTCAACAAAAGTTACAAGTGCAGCCCTCA
GATTGGCAAGCGGATGATTGCTCAAGCACACAAAGGCCTCTGGGCCATTGGAAGATATGTTGCGGACAAAGTTCCCTCCA
CCGTCAAGTTAAATGTCAAAAAGCTTTGCAAACGTTGCCATGCAATGGAATGATTGTGCCTGATGTTTCTCCGCTTGAGT
GAATTTAATGTTGCATATATTATCGCTTTGTATTGTGTTAAGGCAACTCCAATGTGGATCATCAAACCGATGGCACCAAC
TATCCATGGATACATCTGAACTTGTTACGGGCGGGGGGTGCTGGCCATCCAACCATAGACACTAAA-TGTTCGAAACATT
TGAATAGAGTGAGCATAAAAATGAATAAAATTGAACAAAGTTTGATATATTTATAAACAAACGGATGAAATTTAACATGT
TGAAACTTAATTTAATCTAAACTAAACTATGTTAGATACTGGATAGATATAGGACGGTGAGCTTGTATACATGGCACTTT
TGAGGCCATTGGACCTTTGTCATCGTCTGCGTTGTTACTCAAGTTGCCATTTGCCGCACCTTTCTCGTCATGGTTGCACT
AGGGGGCAAAATGCCTGCCAGGCGCCGCAG--------CATCCCTGCTCGGCTGTCGCACGCTCGCTCTTGACAAGCTTG
GCCGCCTTTGTCGCTTGGCGCGCTTGGGCTTCATAGGCCCTGCTTGGAGGAGCTGGTGGTTGAGGCGACACTGATGGCGG
GAGCCTGACTCGGCGATGGTCTTGGACCGGTCGAGAGCCTAGGCCGACACGACTTGGCACTTCGTGAACGCCGCCCAGTG
CTACGTGTTGCATTGCTCTCGATGCCCCGCCTTGGAGAGGCATTTGTTCGTGTCAAGGAAGACACACATTCAGCTTGGAG
GTAGTACTCTACACACGATTGTGCCCAGGACGGTTGG----GGGGAGGACTCCTCCTTCACAGTGGCAAATGAACGCCAT
CAATTGCGAACGAGGCGGGGAGGTCTGCTTCTCTTTCATGCGATATTCGAGTTGGATGTCGTGGCTACATGGTGGGGAGG
TCGACTCCTCCTTTACACGACATCTAATTTGGAAGCCGCGGTTGTGTATAGGGGATGTCATTGTCAGACTGCAGTCGATC
AACAACCACTAGAGCGCGATCTCCGTTTGCCGCTT
>chr7B_697
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--------------------------------------TCAGCACACCAATCTTAGCTGTCAAATTCCTCTACCTGAAGA
AGCTGCGGATTGATCTTAATGATCTACAGATGGGGGGCTTTTCCCCAGCCTATGATTATTTTTCTCTAGCTTATTTCCTG
GATGCGTGTCCTGTCGTGGAGAAGTTTGTGTTGGGTGCAAGTCACTTGT---CCTCTAGCTTGCAACCATGATATCAAGT
ATCTGCATGGTGTGGAACCATTTAACTCTAGCATGTGTTTTGTTCCTATGGATGCAGGTATCACAGACTCGAGTAAAGCA
TGAATTGATTTGTGATGAAGACTCGAACATGAGACAGATGCTGGGACATCGCCATTGCAACCTCAAGAACGTCAGGATAA
TGGGCTTCTGCTCTGCAAAGAGCATGGTCGAACTAACTTGCCATATTCTTGAGAATGCAACTTCACTCGAGCGCCTTACG
TTGGACGCCATATACGATAATAGTAGTTATGGGGACGCTGATAGGTCTTGTGTCGGAAAAAAGGGTGAATGCAACCCAAA
AAGCAGGAGTATCATCAAG---CACGCCCACAAAGGGCTGTGGGCAATTGGTAAATATGTCGTGGAGAAAGTTCCCTCCA
CGGTTCAGTTAAGTGTGAAGAAGCTCTGCAGCCGTTGCCATAAAATTAAATGGTGGTGCCTG------------------
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-----------------------------------
>SNPs
-----------------S--------------------------------------------------------------
-------------S------S-----SS-------------------------------S--------------------
-------------------------------------------------S--------SS-S-------S----------
--------------------------S---------------------------------SSSSSS--SS-S--SSS-SS
SSSS-S--S-SS--S-SSSS-SSSSSSSSS----S---SSSS--------------------------------------
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-----------------------S------S--SS----S-SS-S-SS-S-S-SSS-SS-SSSSSSSSS-----------
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--SSSSSS------------------------------------------------------------------------
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--------------------------------------------------------------------S-----S-----
---------S----S---------------S------------SSSSSS----------S--------------S-----
-----------S-------------------S--------SS------S-------SS------------------SS--
------------------SSSS---------S------------------------------------------------
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-------------------------------------------------------------------------S------
------------------------------------------S-------------------S-----------------
----------------S-------S-------------------------------------------------------
--------S----S------------------------------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------------------S----------------
----------------S-------------------------S-------------------------------------
------S----------------S------------S-----------S-------S----------S--S---------
------------------------SS--S----------S----S--------S------------------S--S----
---------S------------S-------------------SS---------------S----------------S---
--------------------------------S------------------S---S-----------------S------
-----------S------------------------S------------------S------------------------
--------------S------------------------------------S------S---------------------
------------------S-----------------------------------------------S-------------
------------------------------------------------S-------------------S---S-------
-------------------------S----------------------------S-------------S-S---------
--------S------S-------S-S-----------SSSS-----SSS--------S----S----S----S--S-S--
-SS---------------------------------------S-------S-----------------------------
---S---------------S---------------S-----------SS--------S------S-------S------S
----------------------S------------
>forward_728
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--------------------------------------------------------------------GTCCCTGGAAAC
AAACACCC------------------------------------------------------------------------
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>reverse_2997
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------------------------------------GCTCAAGTTGCCATTTGCGA------------------------
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-----------------------------------
