>input_sequence_83557
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-----------------------------ATGGCGCCTCGCCCTGCAGCAGCAACCGGCATCGCCATGACCACCGTTGTA
GCGCTGCTCGTGGTCGTCGTCGTGGCCTGC---------------------------GTGACGACGGTCCAGGCCTTCGA
CGGGACGACGACGCTGGGCCTGCAGGGGCAGTGCGCGGCGGACGAGCAGGAACTGGTCG---------------------
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GCAGGAAGCCGAGCGCCAGGTACATCAGCTACGCGGCGCTGCGGGCCGACGCGATCCCGTGCGACAAGCGCGGGCAGTCC
TACTACACCAACTGCGGGTCGATGCAGCAGGCCAACCCCTACACGCGCGGCTGCTCCGCCATCACGCGCTGCGCCCGCAA
CATGAACTGA----------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G353100
ATTATTTTTGGTATTCGTTGCACTGCCATGATTGAAGATGAATAGATTGGAAGTTTTTTCGCAAAAAAATAATAATCTAA
GTGACCTATCTTCGCACCCATACCCCCTATAAACCTCTATTGGAGTCCCTTTTCGGCTTTGATATAAGTGACGATGTGCT
ATGCTCGTTTGTGAGAGGCGAGTGTGGTCAGTTGCGACCCTTTGCCGCTATGCTCAATTCATAGTGGCCATGTGACCCCC
GCCCCCCGCACCCCCCTCCCACCCCACCCCCAGGGTCGGTGATAAGTACAATCTGTTTGGTAACCTTCTGGGTAGAAGGC
GAGTGGAGTTTGTGGAGGGATTAGGCGTGAGAAATAGATTTTTACTCTTTTTCCCACG---------TGATAGGAATTAT
TCCGCAATGGAGCCGTGCCGACGAATTAAGAAGGACCCCATCGGAAGACATTGGTGCGAGTTGGCTCCCTCACTCTTATA
CCTTTTCCACTTAAACTTCCATTCCATCT-GACTCCAAACCCCACAAACCAAACATTTCGAAAAGGAAAGAATGAGCCCA
TTTTGGTCTTTCCTAATAGTGCCGGGCCAAGGTGACAGATGTAAATGATCAAGGAGCGAGGGGAAGAAATCACTGCTCAT
AAGAAAGGGCAAACGGAACATGCACGCGTTCTACATCAGTGTGTTTGTGGCTTGTTCATCTTTGTATGCAAGATCTCGTG
GACTCCGGCCGGCCGGCTGACTAGCGACTAGCGAGCGA--------GGGTGCCAGACAGACCATGCGCGCCCGGGACGCC
ATTGATTGACTCACTCGAGATCTCTTCTTGCCAGC----------------------GC---------------------
---ACCCCGCCGGCCGGCCTCCATAAATCCCGGTCTCGATCTCCAGTGGCATCGACGTACGTCACCATTCCCCTCGCCTC
TTCCTCCCGCTGAATCCATCCAAGCCCTTCACTGAGCCGCGCACCTTCTTCTCTCTTACTA-----GTTCCTTCTGCATC
CAGCTTTCAGCTCATCCGTCCATCCATCCATGGCGCCTCGCCCTGCAGCAGCAACCGGCATCGCCATGACCACCGTTGTA
GCGCTGCTCGTGGTCGTCGTCGTGGCCTGC---------------------------GTGACGACGGTCCAGGCCTTCGA
CGGGACGACGACGCTGGGCCTGCAGGGGCAGTGCGCGGCGGACGAGCAGGAACTGGTCG---------------------
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GCAGGAAGCCGAGCGCCAGGTACATCAGCTACGCGGCGCTGCGGGCCGACGCGATCCCGTGCGACAAGCGCGGGCAGTCC
TACTACACCAACTGCGGGTCGATGCAGCAGGCCAACCCCTACACGCGCGGCTGCTCCGCCATCACGCGCTGCGCCCGCAA
CATGAACTGATCCGTCCACCCGTCGGCCGTCAACATGGGTATGCA-TTGTGGTAGATCGATCGACCGATCGGTGTGG---
-GTGTGGTGCGGACGGACGCACGCGCGTACGTGAGCGTCTGATCTCGAGCATGCATGATTAGTACGTAGCAGCACGTACA
GTAATTATGCAGCCTCCATTATGTTTGGTCAGCATTATGAACTGCATGTCTGTGTAGTGAAAATGTAAGTCTGTGTGGTG
GCTAATCAGCTGATTTTATGTTTGGTCACTTGAGTCTAGCACCAGCCATTATGCAGCCTCCACTTTTTTAACCGGACGAG
TTAATTTGGTCTCTACTTTCAGTCAAAGCAGTGCAACCGAACAATAGTAGTGTACCAACTGTTCGCACGCATGCAGCTTC
AGTAAGATAGAAGACGGATAGACCAGGAAAGAAATATCAAATCTGAAGTTTTTTTTTTTGGAAAACAGGAAAACTGAAAA
TGTAAAGAAATCTGTCAGAAGAACTTCTTTGGGGAAGTTACCAAAAGGGTGCAAATTAATTAAAACACTGTATTCCTATG
TTCTAAAAATACGAAACAAAATCACACACACACACACACACATTATGAAAAAAAAACTAAGGATTCTAGGAAAAGCGCAA
TAAAATAAGCTATGAACATTCACGTTTTATGTATTTTTTCCCGTG-----------------------------------
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----TAACTTATTTGTAGCTTGACCTAATTTCCATTTAAAAATATCTATAATTTACCCTTTTTGAACAAGTTCTAGTTAC
AATCAAGTTCATTTTCAATACTTTTATTCCAAGTTATAATTATATACCATGAATTTTAACGGAATTTGTTTGTTTCAATA
ATTAATTACTTTGAGTTTCCCTTTTTTTTGCGTGTAATCTATTTTTCCTAAATTTATGGGGTTCTCCTTCTCTGTGGTGA
GTAGGTTACCATATG-------TCAATGCCATCTTGCGTATGGCCATGATCCAATATTGTCTGATGTTGGAAGTTTATGA
AATCCTTCCTCGCAAAAAAAT
>chr1D_325
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----GGAGTTTGTGGAGGGATTAGGCGTGAGAAATAGATTTTTACTCATGTTTCCTTATTTGGCACATGATAGGAATTAG
TCCGCGATGGAGCCCTGCCCACGAATTAACAAGGACCTCATGGGAAGACATTGGTGGGAGTTGGCTCCCTCACTCTCATA
CCTTTTCCACTTAAACTTCCATTCCATCTAGACTCCAAATCCCACAAACCAAACACTTCGGAAAAGAAAGAATGAGCCCA
TTTTAGT-------------GCCGGGCCAAGGTGACAGATGTAAATGATCAAGGAGCGAGGGAAAGAAATCACTGCTCAT
AAGAAAGGGCAAACGGAACATGAATGCGCTCCACTCCAGTGTGTTTGTGGCTTGTTCATCTTTGTATGCAAGATCTTGTG
GGCT----CCGGCCGGCTGACTAGCGACTAGCGAGCGACGGAGCGAGGGTGCCAGACAGACCATGCGCGTCCGGGGCGCC
ATTGATTGACTCACTCGAGATCTCTTCTTGCCAGCTGCGCGCATTACATTTGCCTGCGC---------------------
---ACCCCGCCGGCCGGCCTCCATAAATCCCTGTCTCGAACTCCAGTGGCATCGACGTACGCCACCATTCCCCTCGCCTC
TTCCTCCCGCTGAATCCGTCCAAGCCCTTCACTGAGCCGCACACGTTCTTCTCTCTTAGCTACTCTGTTCCTTTTGCATC
CAACTTTCAGTTCATCC----ATCCATCCATGGCGCCTCGCCCTGCAGCAGCAACCGGCATCGCCAAGACCACCGTTGCA
GCACTGCTCGTGGTCGTCGTCGTGGCCTGCCAGCTGCCGCGCGCCACCGTCATCGCCCCTCCCTCGTCGGAGCCGGGCAA
ACATTGTTGTAGTA--------------------------GACAGTCGGGAAGTCGTCGTGCTAAGGCCCCATAGGACCA
GCACACCAGAACAGCAACCGCCGCTAATGAAGAGAAGCATAGATCGAAAGGATCCAACCTACAGGCACACAGACGTAGAC
GAACGAAGACCGGATCCAGTTGGATCCACCGAAGACAAAC----GCCGACCGGATCCCACGAGATCC-------------
-----------------------GCCGGAGACAAACCTCCACACGCCTTTGGACGATGCTTGAAACATCACCGGGACGGG
GGCTAGGCGGGGAGGACCTTATTCCATCTTCAAGAAGACGCCGCCGCCTCATCTTCTTGAGC------------------
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--------------------------------------------ATGGCACAAACCCTAATAAAACTCAGAAAAGCATCT
AAAGCCGGAGCCCTCCCGCCGGCAAGGGCCAGGATCCACCGTGCCTCCATGATCCGAGGACCATAGAAGATAAGGCGGAC
CGGCGGCGCCAGCGAGAGGCAAGGAAACCCTAGATGGGAGTTCGGGCATGGGCAGGAGGAGCGAAGGGTTTTCAGTGTTA
ATCCTAACTTATCTGTAGCTTTACCTAATTTCCATTTAAAAATATCTACAATTTACCCTTTTTGAACAAGTTCTAATTAC
AATCAAGTTCATTTTCAATACTTTTATTCCAAGTTATAATTATATACCATGAATTTTAACGGAATTTGTTTGTTTCAATA
ATTAATTACTTTGAGTTTCCCTTTTTT--GCGTGTAACCTATTTTTTCTAAATTTATGGGGTTCTCCTTTTCTGTGGTGA
GTACTGAGTAGGTTACCGTACATCATTGCCATCTTGCGTATGGCCATGATACAATATTGTCTGATGTTGAAAGTTTATAA
AATCCTTCCTCGCAAAAAAA-
>chr1B_736
GACTAGC-------------------------------------------------------------------------
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----------------------------------------GAGCGAGGGTGCCAGGCAGACCATGC---------GCGCC
ATTGATTGACTCACTCGAGATCTCTTGTTGCCAGC----------------------GCGCATTACATTTGCCTGCGCTG
CGCACCCCGCCGGCCGCCCTCCATAAATCCTAGTCTCGAACTCCAGTGGCATCGACGTACGCCACCATTCCCCTCGTCTC
TTCCTCTCGCTGAATCCATCCGAGCCCTTCACTGAGCCGCGCACCTTCATCTCTGTTA--------GTTCCTTCTGCATC
CAGCTTTCGGCTCATCCGTCCGTCCATCCATGGCGCCTCGCCCTGCAGCAGCAGCCGGCCTCGCCGTGAGCACCGTTGTA
GCGCTGCTCGTGGTCCTCGTCGTGGCCTGCCAGCTGCCGCGCGCCACCGGCGGCGGCGTGACGACGGTCCAGGCCTTCGA
CGGGACGGCGGCCCTGGG---GCTGGAGCAGTGCGCGGCGGACGAGCAGGAGCTGGTCCGGACGCGGAC-----------
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-------------CGCCAGGTACATCAGCTACGCGGCGCTGCGGGCCGACGCGATCCCGTGCAACAAGCGCGGGCAGTCC
TACTACACCAACTTCGGGTCGATGCAGCAGGCCAACCCCTACACCCGCGGCTGCTCCGCCATCACGCGCTGCGCCCGCAA
CATGAACTGATCCGTCCGTCCATCGGCCGTCGACATGGGTATGCAGTTGTGGTAGATCGATCGACCGATCGGTGTGGTGT
GGTGTGGTGTGGACGGACGCACGCGAGTACGTGAGTGTGTGATCTCGAGCATGCATTATTAGTA-GTAGCAGTACGTA--
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------------------------------------------S-S--S--SSS---------------------S
-----S--------S----S---------S-------S---S--------------S-------------------S---
---------------------------------------S---------------S----S---S---------------
----S--SSSSSSSSSSSSS------------------------------------------S-----------------
----------------------S-S---S--S--SS----------------------------------------S---
-S--SSSS-------------------------------------------------------------S-----S----
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-------------------------------S-------S---------------------S------------------
----------------------------------------------------------SSS-------------------
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-------S----S-----SSS--S--S-----------------------------------------------------
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-S-S----S-SS--------------------------------------------------------------------
-------------S------------------------------------------------------------------
-----------------SS--S----------------------------------------------------------
---------S---------------S---------S--S-----------------S-------S-------S-----SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SS-S---SS----SS-SS--SS-------SSSS
S--SSSSSSSSSSSSS-SSSSS-SSSSSSSSSSS-SSSS-SS-SS-----------------------------------
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------------S--------S--------------------------S--------------------------S----
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---------------------------SS--------S--------S----------------------S----------
---SSSSSSSSSS-S----------S------------------------S------------------S--------S-
--------------------S
>forward_663
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---AAAGGGCAAACGGAACATGC---------------------------------------------------------
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>reverse_1864
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-----------------------CAAAGCAGTGCAACCGAACA-------------------------------------
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