>input_sequence_83543
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---------------------------------ATGGCGTCCACTCGTCGCATGGCTGCCGCGCCGGCCG---TCCTCCT
TC---TCCTCCTCCTGCTCGTCGCCACAGGTACGCCCGCCCATCCATGGTTCCTGACTCC--------------------
-------T------GACCATCTGTGCTCAGCGATACTTAATAATTACTTG----------CTGTGGTTGCATTGCAGAGA
TGGGGACGATGAAGACGGCGGAGGCCCGGACGTGCCTGTCGCAGAGCCACAAGTTCAAGGGCACCTGCCTCAGCAACAGC
AACTGCGCCGCCGTGTGCCGCACCGAGAACTTCCCCGACGGCGAGTGCAACACGCACCTCGTCGAGCGCAAGTGCTACTG
CAAGCGGACCTGCTAA----------------------------------------------------------------
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>chr1A_1_TraesCS1A01G013600
TAGCCAGGTTGAATCAGCAAGAAAGGGGATCGGGATTTAGAGCCGGGGGTGGGAGGAAGGATACATCGCCCAACGGCGCC
ACCAGTGATCTGATCCAACGATACCCTAACTCACGCCCACTCCTGGTATATATGGTTCACTTGCTCCAGGTCGGTCCAAT
GAAACGCGAGCTGGGCCTCCTCTCCCGCCTGGGCCTGGGCTGGGCTGTAGCGGAGCCGACCTTGGGGTCCGCCAATGTAG
TTCCCGTGACAAGGGAGTAGCTTGTCTTAAATTTGTCTAAGATACATATGTACTCTAAACACATTTTAATGTTAGATACA
TCCATACCTAGATAAATGTAAGACAAATCTTTTTAGGACTGAGGTAATATTAGCGAATATCACTTA--GATGGTTTGGAG
CGGATCATATGGATTGCCTATGTACAACTGTTGCAGCCGATCATGCACGTACTACTGATTCGGAGCGAGTGCGATCCGCC
CATGGCCACAGCTGAGGGGGTGG---------------CTATCTGCTTGTCGTTAGCATGGTCCCAAC--------GGGT
CTGCTGGCTCCGGGCTCTCATGTCTCATCGCAAGAAGTGACTAGGCGGGTAAAA--TAAGTAAAGTTGGCAGAAAGCAAT
GAATCCAG-----------CGGTCAGCGTGGCAGGGAAAAGCATCGGCGTTCACTGCTGTGCCGACGAGCTCCACTCACT
CAGCCGTAGCCCGGCCGGCC--------------TGAGCAAGCACATGTCGGCA-------------TCGAGTGAATTAT
TGGAGACA------CCTGCTGCCATGGCAACGT----GGA--------------ATTGATATCTCCCGCCCACCACCACT
AATATCTACCTACCGTACCCCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TGCCTATA
TA------------------------------------------------------------------------------
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----------------AACCCCTGCCTCTTCTT------GTG--------------TCTGCACCACCTTCGCATTGCTAG
---------CCCCACGTAGAC--------------GCAGCAGCAGCGAGCTCTGTCGGTTCTCTATCTAGCATCTCCGGT
GTGAAGCGAGCAAGCAGAG------AGAGAGAGATGGCGTCCACTCGTCGCATGGCTGCCGCGCCGGCCG---TCCTCCT
TC---TCCTCCTCCTGCTCGTCGCCACAGGTACGCCCGCCCATCCATGGTTCCTGACTCC--------------------
-------T------GACCATCTGTGCTCAGCGATACTTAATAATTACTTG----------CTGTGGTTGCATTGCAGAGA
TGGGGACGATGAAGACGGCGGAGGCCCGGACGTGCCTGTCGCAGAGCCACAAGTTCAAGGGCACCTGCCTCAGCAACAGC
AACTGCGCCGCCGTGTGCCGCACCGAGAACTTCCCCGACGGCGAGTGCAACACGCACCTCGTCGAGCGCAAGTGCTACTG
CAAGCGGACCTGCTAAGCAACACCAGTCCGCGCGACGTCC-----TCCGGTGGATGCTTGCTACTGGGCTAGAGCATCCA
T----GCCGTCCCTTAGATCTGTTCGTCCCTACTCCGTCTATTTCCATTTCCTTTACGTTGCTCCTAGGGATGACTGAAA
ATAAAGTAGCTACCTGCACCCTCGGCATTGGCTGTTCGTCTGCATGTATGCTGTTTAAGTGTTCGTGGCTTTAGTTTGTG
CTGTTGATGTAATAACGATGCCACTGACAATTTGGCTTCTATGTCTTGTGTTGGAACTTTGAATCAGCAGG---TTTGTT
GGCTTGTCTGTTAAACGGAGCGAACACTTTTTTTCTGTTTCTTTTTTTTTTCTGCGAGAGAAACAGAGCAAAAAAAATTC
ATGTAGCGAAACGAATTTCCCAAGCTTCTCAACTATTTTAACTTGACGTGCATGAATGGCTCTGTTTTTTAACATACAAG
TTAAAAAAATTCAAATACATGTATGAACATTTTTCAAATACACATAGAGTTTCGTTTAATGGTA----AGTTTTTTTACA
CTATATAAACATTTTTT-CAAATAAATGTTCGAATTGTTTTTTAAATACA------------------------CGTTGA
ACATAGTTTTCAAGTACATGTCAAAGAATTCGAAGACACATTGGATTTTTTTCTAATGGTACCAAATATTTTGT--AAAG
ATTGTTTGCACCGTATAATCATTTTTTATAAAGTTTATCTAACATATTTTTTAAATCATGAGAACATTTTTTCTAATGTC
ACAAAACATTTGTTTGAATTTTACAAAACAATGTTTTTAAATTAC------------ATTGTATAAATATTCTGTAAAAA
AATCATGAACATTCTTTGAACAGCTGAAAAAAAAATGAGTCACGGACAATGTTTCTCTGAATAGTACCAATATTTATGAT
--GTTCACCGTTGATGTTGCACAGGCCCAGACTATGCATAACTCTTCTTAGACAGAGAAATGTTGCAGATGCACCACTAT
AAT-TATATTTATGACAAGTGGAAAATCTACAGG-
>chr1B_365
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--------------------------------------------TAGTATTAGCGAATATTACATATAGATGGTTTGGGG
CAGATCATATGGATTGCCTATGCACAACCGTTGGTGCAGATCATAC----ACTACTGATTCGGAACGAGTGCGATCTGCC
CATGGCCACAGCTGACGGGGTGGCAACCTTATCCAGGTCTATCTGCTTGTCGTCCTGCCGATCGATCCCCTCAGCAGGGT
CTGCTGGCTCTGGGC-------TCTCATCGCAAGAAGTGACTAGGCGTGTAAAATGTAAGCAAAGTTGGCAGAAAGCAAT
GAATCCAG-----------CG----------CAGGCAAAAGCATCGCCATTCACTGCTCTGCCGACGAGCTCCACTCACT
CAGTCGTAGCCCGGCCGTAGGCCCCTGGCCGGCTTGAGCAAGCACATGTCGACA-------------TCGAGTGAATTAT
TGGAGACCCCT-GCTCTGCTGCCATGGCAACGTACATGGA--------------ATTGATATCTCCCACCCACCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAACTCCTGCATCGTC------TTGTA--------------TCTACACCACCTTGGCATTGCTAG
ACAGGACAGCCTATATTGACGTAGACGCAGCAGGAGCAGCAGCAGCGAACTCTGTCAGTTCTCTA----GCATCTCCG--
GTGAAGCAAGCAAGC------------AGAGAGATGGCGTCCCCTCGTCGCATGGCCGCCGCGCCCGCCG---TCCTCCT
CCTCGTCCTGCTCCTCCTCGTCGCCACGGGTACGCCCGTCCGTCCGTC------------------------------CA
TGGATAGTAGTAATGAGCATCTCTACTCACCGGCCGGCACTTACTTATTGAGTTATTGGACTGTGGTTGCATTGCAGAGA
TGGGGACGATGAAGACGGCGGAGGCCCGGACGTGCCTGTCGCAGAGCCACAAGTTCAAGGGCACCTGCCTCAGCAACAGC
AACTGCGCCGGCGTGTGCCGCACCGAGAACTTCCCCGACGGCGAGTGCAACTCCCACCGCCTCGAGCGCAAGTGCTTCTG
CAAGCGCACCTGCTAAGCAAGCCCAGTCCGCGCTACTGGC-----TCTGGCTAGCTAGACTGCTAGATC---AGCAGCCA
T----GCCGTCAGTTAGATCTGTTCGTCCCTACTTTTGTTTCCG---TTTGCTTTACGTTGCTCTTGGGGATGACTGAAA
ATAAAGTAGCTACCTACATCCTCTGCATTGGCTGTTCCACTGCATGT----TGTCTAAGTGTTTCTGGCTTTAGTTTGTG
CTGTTGATGTAATAACGATGCCACTAACAATTTGGCTTCTATGTGTTGTGTTGAAACTTGGAATCAATCGGTTATTAGTT
GGCTTGTCTGTTAAACGGAGTAAACAATTGTTTTATTG----TTTCTTTTTTTATGAGAGAAACGGAGCAAGCATT-TTC
ATGTAGCAAAACAAACTTCCCAAGTTTCACAGCTATATTAACTCGACGTGCATGAATGGCTCTGTTTTTTAACATACAAG
TTAAAAAAAATTAAATACATGTACAAACATTTTTCAAATACACATAGAGTTTTGTTTAATGGTACAGAAGTTTTTTTACA
TTGTATAAACTTTTTTTGCAAATACCTGTTTGAATTGTTTTTCAAATACATGCAAAAGATTTTTTTTTAATACACGACGA
ACACATTTTTCAAATGCATGTTCAA---------------------TTTTTTCTAATGGTACCAAATATTTCCTGGAAAC
ATTGTTTACAGTGTATAAACATTTTTTATAAAATTTCCTTAACATATTTTTGAAATCATGAGAACATTTTTTCAGATGTC
ACAAACATTTTTAA------TTAAAAAAATATGTTCTAAAATTACGCAAAAGAATAAATTGTATAAATATTATTTAAAAA
TTTCATGAACATTCTTTGAACACCTGAACATTTTTAAATGTTATGGATATTTTTTTCTGAATAGTACAAACATTTTATGA
TAGTTCACCATTGATGTTGCACATGTCCAGAGTATAGATAATTCTTCTGACACAAAGAAATGTTGCAGATGCACCGCTAA
TACATATATTTATGACAAGAGGAAATATTTACAGG
>chr1A_573
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-------------------------------------TGAGTAGGCCGGCAAAA--TAAGTAAAGTTTGCAGAAAGCAAT
GAATCCCAGCACTGAGCTTCG----------CAGGCAAAAGCATCGGCATTCAGTGCTCTGCCGACGAGCTCCACTCACT
CAGCCGTGGCCCT---GACGTC--------------AGC-AGCAGATGTCGGCAGGCATGCATGCGATCGACC-------
-GGACAGCCCTGGCCCTGCTGCCATGGCAAGAT----GGATGCATGCGATCTAGATTAATATATCCCACCAACCACCACT
AATCTCTACTCTACA------------------------------------------------TCTCTCTC-TGGCTATA
TA------------------------------------------------------------------------------
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----------------AACCCCTGCCTCGTCTTCTAGTTGTA--------------TCCACGCCACCTTGGCTTTGCTAG
ACAAGACAGCCCCACGTAGT--------AGCAGCAGCAGCAGCGGAGAGCGCGGTCGGTTCTCTA----GCATCTCCG--
GTGAAGCGAGCAAGC------------AGAGAGATGGCGTCCCGTCGTCCCATGGCCGCCGCGCCTGCCG---TCCTCCT
CC---TCCTGCTCCTGCTCGTCGCCACAGGTACGTCCGACCGTCGGCAGTGTGCTTCTTACTTCCCAGTGAGAAGATGCA
TGCATGGAC---------------GGTGACCGGTGCTTAATTACTATGCTTCGT-CGTGTGCA---------TGCAGAGA
TGGGGACGACGAAGGTGGCAGAGGCCCGGACGTGCCTGTCGCAGAGCCACAAGTTCAAGGGCACCTGCCTCAGCGACAGC
AACTGCGCCGGCGTGTGCCGCACTGAGAACTTCCCCGACGGCGAGTGCAACTCCCACCGCCTCGAGCGCAAGTGCTTCTG
CAAGCGGACCTGCTAAGCAAGACCAGTCCGCGCGACATCATCCGATCCGACGGATGCTACTT-----GCCAGAGCATCTA
TGCCCGCCGTCAGTTAGATCTGTTCGTCCCTAC-----------------------------------------------
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>chr1D_573
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-------------------------------------TGAGTAGGCCGGCAAAA--TAAGTAAAGTTGGCAGAAAGCAAT
GAATCCCAGCTCTGAGCGTCG----------CAGGCAAAAGCATCGGCATTCAGTGCTATGCCGATGAGCTCCACTCACT
CAGGCGTGGCCCT---GGCC--------------TGAGC-AGCACATGTCGGCAGGCATGCATGCGATCGACTGAATTAT
TGGACACCCCTGGCCCTGCTGCCATGGCAAGGT----GGA--------------ATTAATATATCCCACCAACCACCACT
AATCTCTACTGTACA------------------------------------------------TCTCTCTC-TGGCTATA
TA------------------------------------------------------------------------------
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----------------AACCCCTGCCTCGTCTT------GTAGTTGTATCCACAGTTCCACAACACCTTGGCTTTGCTAG
ACAAGACAGACTCCAAG-------------------------------------------------------TCTCCG--
GTGAAGCGAGCAAGC------------AGAGAGATGGCGTCCCCAAGTCGCACGGCCGCCACGCCCGCCG---TCCTCCT
CC---TCCTGCTCCTGCTTGTCGCCACAGGTACGTCGA--------CAGCGTGCTTCTTTCTTGCCGGTGAGAAGATGCA
TGGATAGAC---------------GGTGACCGATGCATAATTACTATGGTTCGTACGTGTGCA---------TGCAGAGA
TGGGGACGACCAAGGTGGTGGAGGCCCGGACGTGCCTGTCGCAGAGCCACAAGTTCAAGGGCACCTGCCTCAGCGACAGC
AACTGCGCCGGCGTGTGCCGCACCGAGAACTTCCCCGACGGCGAGTGCAACTCCCACCGCCTCGAGCGCAAGTGCTTCTG
CAAGCGGACCTGCTAAGCAA------------------------------------------------------------
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>chr7B_843
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---------------------------------------------------TCTCTCTCTCTATCTGTGCAATGCCTATA
TA------------------------------------------------------------------------------
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----------------AACCTCTCCTTCGTCTT------GCG--------------TTCACTCCACCTTCGCTTTGCTTA
GCTAATTAAACACAGC---T--------AGCAGCA----CGGCGGAGAGCCCGCTCGGTTCTCTA----GCATCTCCG--
GTGAAGCAAGCAAGCAAACAAGAGTAGAGAGTGATGGCGTCCCCTCCCCGCATGGCCGCCGCGCCCGCCATCCTCCTCCT
CT---TCCTGCTCCTACTCGTCGCCACAGGTACGTCCTTC---CCGTC------------------------------CA
TGGATAGT------GAGCATCTGTACTCACCGGCACTTACTTACTTATTG------TGGACTGTGGTTGCATTGCAGAGA
TGGGGACGACGAAGACGGCGGAGGCCCGGACGTGCGAGTCGCAGAGCCACAAGTTCAAGGGCGCCTGCTTCAGCGACACC
AACTGCGCCAGCGTGTGCCGCACCGAGAACTTCCCCCGCGGCCAGTGCAACACGCACCACGTCGAGCGCAAGTGCTACTG
CGAGCGGGACTGCTGAGC--------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------S--S--------------S-
-S--------------------S-----S----SS--S------S-SSSS--------------S-----------S---
---------------S-------------------------------------SSSSSS-S--SSSS-------------
----------S----SSSSSSS----------------------------------------------------------
---------------------SSSSSSSSSS----S------------S---------S---------------------
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-------S-----------------------------------------------------------S------------
---S-----SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-----------------
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----------------------------S------------------------------S--------------------
-------------------SS--------------------------------------------SSSS---------SS
----------------S-S-----------------------S-------------S--------S--------------
S--------S----------------------------S--S---S-S--SSSSSS--SS--------------------
----------------S------------S-----------S-S--S---------------------------------
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----------S-----------------------------------------------S---------------------
--------------------S---------------S-------------S-------SSS-SSS-S--S----------
-----------SS---------------------SSSSS-SSSSSSS---S-------------S-S-------------
---------------S--S----S-------------SS--------SSSS---S--------SS---------------
-------------------------S------------------S--------S-----S------SSS-------S---
--------------------SS----S--S----S-SSSSSS---S-----S-SS---------S------SS-SSS---
-------S----S--S--------S---S--S----S------S------------------------------------
---------S-S-----------SS---------------------------S---------------------------
S-S-------S-------------SS----S-----------S---------------------------------SS--
---S-S-------S-S-----SS--SSSSSSSSSSSSSSSSSSSSS-------------------------SS------S
-------S--SS------S-------------S---SSS------------S---------------------SS-----
-----SSS---SSSSSSSSS---S----SS-----S-S---------------------------------S-S------
SS--------------------S-----S-SSSSSSS-SSSSSS-SSS--S---S------------S--S----SSSSS
---------S-------------S-S-----S---SS----S------S-S---S--------------------S---S
S-S----------------S-----SSS-SSSS--
>forward_118
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------------------CGATACCCTAACTCACGCCC------------------------------------------
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>reverse_2204
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-------------------------------------------TGACGTGCATGAATGGCTCT-----------------
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-----------------------------------
