>input_sequence_83522
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-------------------------------------------------ATGGT------------------------GG
CGGTCGGCCACGGCGCGCACCCGGCCTTCTGGAGGACGCCGACGCCGTACCTCCTCCTCGGCTTCGCGCTCATGATGGGG
ATCATCGCCGTGGCGCTGCTCGTGCTCGTCTGCACGGACAGCAAGCCGTCCGGGTCGTCGTCGCGGCGGGGGAGCGCCGG
CGAGGACGCGTCGGCGCGCGGGATGGCGCCGCTCGACAGGGAGCCCAAGGTCGTCGTCATCATGGCCGGCGACGACTTGC
CGTCCTTCCTCGCCAGCGCCAGGCCGTTCGCCTTCCCC---GCCGTGACCGCCGCCGACGCGGGGGAGCCGCGCGGGGAG
GACGCGTCGTAG--------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G392000
AGTCAAACTACAAACATTCAAAAAAATAATCTCCGTTGCCCTCTCTAGGGGTAGTGCTTGAAATGAATGAAAAA--ACAC
ATTAATGCATGTCTTTGTTCATTTAATTAGTATTATTTTAAAATAGAACATCTTAAACTTGTACTACAAAGTTGGGTATC
GTGCAACGCAATGCGCGGT-CGTCACACCGCCGTTGGT--------ATTTTCAAATGTGTCTAGGATCAACAAGGCGTGG
ATCATCCCGGTCTCCTGGACCAAGTTCAGCGGCCGGGCAAGCA----------TACATTTCTTCCGTTTTTGCGGCAGAG
CATGCGTTTGATTTCCACATGCCCAGGTTCACTGAATCTCCTCCACCCGGAGTTCTACAATGAACTCCGCCAGTGCCAGC
ACAGTGTACAGTCACACCTCGGCGTTCCCGAACCTCGAGCATCCGCCTCTCGTCTCACCCCGTATCTTTGCAGAGACTTC
CAGAACCTACT------CACTGAGGTGAATTCAAATAATTCTTC-----TACTGGCACACTCAATTCCATTTTTTGGATG
TTCTTTAATCA-TGATGGCATCGGACGCAGCGATCTCGCCACCTATGCTGTGCGGGCCCCCACCTATGCTGGGCGGGCCC
CCACCTACTGGCACAC---------------------GCAGCTGCAGGCGCTCCTTCGTGTGCATGCAGCCGCAGACCGC
CCAAACCAAACCCGCGGGCCACTGGAGGAGCACCTGGGGGAGGCACACGCAGAGCACAGCTGGCAAGCA--AACCTCCGT
-------CGCCGCGCCGCGCCGCGCCGCGCAGTCACTTTTCCGCGCTCTCGG-----CCTCCTTCGGCGGGCCGACTATA
AATGCCGCCTCCCT-CCCCCTCCTCCCGATCGCAGTCTCCCGCTCAGCCGTTACAGC---CACCCACAGAGAAGAAGCGC
GAAACCACCACTCTGCTTGCTGTACGCGCACACAGAGAGGAAGAAAGTG---G--------------GAAGAGGGATCGA
TCCGCGTGCTCCATCGTTCGTCATGAGGCCGATCAGAGCGGGCGAGGCGATGGT------------------------GG
CGGTCGGCCACGGCGCGCACCCGGCCTTCTGGAGGACGCCGACGCCGTACCTCCTCCTCGGCTTCGCGCTCATGATGGGG
ATCATCGCCGTGGCGCTGCTCGTGCTCGTCTGCACGGACAGCAAGCCGTCCGGGTCGTCGTCGCGGCGGGGGAGCGCCGG
CGAGGACGCGTCGGCGCGCGGGATGGCGCCGCTCGACAGGGAGCCCAAGGTCGTCGTCATCATGGCCGGCGACGACTTGC
CGTCCTTCCTCGCCAGCGCCAGGCCGTTCGCCTTCCCC---GCCGTGACCGCCGCCGACGCGGGGGAGCCGCGCGGGGAG
GACGCGTCGTAGGCGCGGCGCG--------CGCACCCGTGTACCCTCTGCCGGACGCGGGCCCAATTTTGGTCGT-CGGA
TTTTCTCCTAGGATTTTCCCCGCGTGTTCTGTCTGTAGAATCT-------AATTAGCAGAGAAGATAGAGCTGTTGTTTG
CGTTCTT---------GGTGAGGTGAGCGGCGCGC---------------CGGCGGCGTGCGTTGAGATCT----GT--G
AACGCAAATGGAATTTTGGCCTGCAT----ATTCAATAAATGCATGACGCTCGCTTTGCTGCTCTCCAGTTCGATTT---
--CCAATTGAAATTGCCACACTTTTCGTTTGGGTGGGTGATATTATAAAGAGGTAAAAGCACGGCAGACCCAGCAATTTG
TCCGGCCCGTGATGTTTCAGCCCACAAACTTGCAAAACTCCACTCCGCCACCCACAAACTTGCAGCCCATGTGCAAAAAC
ACCCAAAGCCAATCCCGTTGCGACATCTGGCCGAGGCGGAGCCGAGGCGTTCGTCGCTCCCTTTTGCAGAAACCCCCTTG
ACATTTACCAGTACTGAACCCGCACTCCACATCTAT--------------------------------------------
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-------------------------------------------------------GGCGACAGTTGATTCAGTATAGAAA
GAAGACTGGCTGTACTAACACAAAACACTACTCGTATTCAGTTGGCAAAGGACAATAGAGGACAACGGTAGATCCTGGGT
TCGAAACCCGGGCCAAACCC--TTTTTTTTGCCATTTTTAACATAGAAAAGATTCAGACTGAAACATAGAAATCAGTTCA
GAATTTGCTGTACATATGTGGTTTGGCAAACTCTGTTTTGCCCTGTCGTTTCATCTCTCCACAGAACTCGCGCGCTGTGG
CGACGGTTCCGCTCCAAGATGACGTCATCCGTCTCGGCGGCGTCGTCGGCGACCGGCGCAGGCATGGAGCCGCCGGAATC
CGTCGGTTTCGTCCGTGAACCTGGAGCTATCCCCCCCGACTATGGTATG-------------------------------
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------------------------CCCTGTTATGCTCTGTTCTGCGCCAGTCTTGTTGCGTCTTTTGTGGGGGTGGGGGT
TTGGTAGGGTTCTTGAACTAGGA
>chr7D_28
---------------------------AATCTCCGTCGCCCTGTCTAGGGGTAGTGCTTGAAATGAATGAACATATACAT
ACTAATACAAGTCTTTGTTCATTTATTTATTTATTAAA-AAAACAGAACATGTTACA----TCTTACTCCGTTGGCGACC
ATGCAACACAATGCGCTGTTCGTCACTTCGCCGTTGGTTGTTCCAG-------AACGTGTCCACTGTCAGCGAGGCGTGC
ATCAACCCGATCTCCTGGACCAAGTTCAGCGGCCGGGCAAGCA----------TACATTTTTTGT-TTTATAC-------
CATGCGTTTGATCTCCACATGGCTAGGTTCACTGAATCTCCTCCACCCGGAGTTCTGCATTGAACTCTGCCAGTGCCAGT
ACAGCCAGT--TCACACCTCGGCGTTCCCGAACATCGAGTATCCGCTTCTCGTTTCACACCGTATCTTTGCAGAAACTTC
CAGAATCTACT------CACTGAGGTTGAAATTAAATTATCCTTCTACTTACTGGTACACTCAATTCCATTTTTTGGATG
TTTTTTAATCA-TGATGGCATTGGATGCAGTGATCTCGCCACCTATGTTGGGCAGGGCCCCACCTGTCTCTCGAGACCCG
AAAAACCAGGCCCCACCATCCAAGCGGCCAAAACCCAGCAGCTGCAGGCGTTCCTTCGTGTGCATGCAGCCGCAGACCGC
CCAAACCAAACCCGCGGGCCACTGGAGGAGCACCTGGGGGAGGTACACGCAGAGCAGAGCTGGCAAGCA--AAGCTCCGT
------------CGCCGCGCCGCGACGCGCAGTCACTTTTCCGCGCTCTCGG-----CCTCCTTCGGCGGGGCCCCTATA
AATACCGGCTCCCT-CCC-CTCCTCTCGGTCGCAGTCTCCCACTCAGACGTTACAGC---CACCCACAGAGAACAAGCGA
GAAACCACCGCTCTGCTTGCTGTA--CGCACACAGAGAGGACGAAACAGACAAGAGAAAGATCAGGAGAAGAGGGATCGA
TCCGTGTGCTCCATCGTTCGTCATGAGGCCGATCAGAGCAGGCGAGGCGATGGT------------------------GG
CGGTCGGCCACGGCGCGCACCCGGCGTTCTGGAGGACGCCGACGCCGTACCTCCTCCTCGGCTTCGCGCTCATGATGGGG
ATCATCGCCGTGGCGCTGCTCGTCCTCGTCTGCACGGACAGCAAGCCGTCCGGGTCGTCGTCGCGGCGGGGGAGCGCCGG
CGAGGACGCGTCGGCGCGCGGGATGGCGCCGCTCGACAGGGAGCCCAAGGTCGTCGTCATCATGGCCGGTGACGACTTGC
CGTCCTTCCTCGCCAGCGCCAGGCCGTTCGCGTTCCCC---GCCGTAAACGCCG---ACGCGGGGGAACCGCGAAACGCG
GACGCGTCGTAGGCGCGGCGCGGCGCCGCGCGCACCCGTGTCCCCTCTGCGGGACGCGGGGCCAATTTTGGTCGT-CAGA
TTTTCTCCTAGGATTTTCTCCGCGTGTTCTGTCTGTAGAATCT-------AATTAGCAGAGAAGATAGAGCTGTAGTTTG
CGTTCTT---------GGTGAGGTGAGCGGCGCGCATGGCGTGAGCGCGCCGGCGGCGCACGTTGAGATCTGTGAGT--G
AACGCGAATGGAATTTTGGCCTGCAT----ATTCAATAAATGCATGACGCTCGCTTGGCTGCTCTCCAGTTCGATTT---
--CCAATTGAAATTGCCGCACTTTTCGTTTGGGTGGGTGATATTA-----------------------------------
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>chr7B_143
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----------------------------------------------------------------TACAAAGTTGGCGATC
ATGCAACGCAATGCACTGT-CGCCACGCCGCCGTCGGTTTGTTCCAATTTTCAAATGTGTCTAGGATCAACAAGGCGTGG
ATCATCCCGATCTCCTGGACCAAGTTCAGCGGCCGGGCAAGCAAGCATACAGATACATTTCTTTC-TTTTTGCGGGAGAG
CATGCGTTTGATTTCCACATGGCTAGGTTCACCGAATCTCCTCCACCCGGAGTACTGCATTGAACTATGCCAGTGCGAGT
ACAG-------TCACACCTCGGCGTTCCCGAGCCTGGAGCATCCGCCTCTCGTTTCACCCCGTATCTCTGCAGAAACTTC
CAGAACCTAAGATAGACCACTGAGGTTAATTCAAACTGTAATTC-----TACTGGCACACTAAATTCAATTTTTTGGATG
CTTTTTAATCATTGATGGCATTGGATGCAGTGATCTCGCCACCTATGTTGGGCAGGCCCCCACCTGTCTCGAAAGCCA--
AAAAACCAGGTCCCACCATCCAAGCGGCCAAAACCCAGCAGCTTCAGACGTTCCTTCGTGTGCATGCAGCCGCAGACCGC
------CAAACCCGCAGCCCACAGGAGGAGCACCTGGGGGAGGCACACGCAGAGCACAGCTGGCAACTGGCAAGCACAGC
TCCGTCGCGCCGCGCCGCGCCGCGCCGCGCGGTCTCTTTTCCGCGCTCTCGG-----CCTCCTTCGGCGGGCCGCTTATA
AATACCGCCTCCCTCCCC-CTCCTCTCGGTCGCAGTCTCCCACTCGGACGTTACAGC---CACCCACAGAGAACAAGCGC
GAAACCGCCACCCTGGTTGCTGTA--CGCACACAGAGAGGAAGAAAGTGAGAGGAGAAAGATCAGGAGAAGAGGGACCGA
TCTGTGTGCTTCATCATTCGTCATGAGGCCGATCAGAGCAGGCGAGGCGCTGGTGGGAGTCGCCGGGGCTCCC---GCGG
CGGTCGGCCACGGCGCGCACCTGGCGTTCTGGAGGACGCCGACGCCGTACCTCCTCCTCGGCTTCGCGCTCATGATGGGG
ATCATCGCGGTGGCGCTGCTCGTGCTCGTCTGCACGGACAGCAAGCCGTCCGGGTCGTCG---CGGCGGGGGAGCGCCGG
CGAGGACGCGTCGGCGCGCGGGATGGCGCCGCTCGACAGGGAGCCCAAGGTCGTCGTCATCATGGCCGGCGACGACATGC
CGTCCTTCCTCGCCAGCGCCAGGCCGTTCGCGTTCCCC---GCCGTAGACGCCG---ACGCTGACGAGCCGCGAAACGCG
GACGCGTGGTAGGCGCGGCGCGGCGCG-------CCCGTGTACCCTCCGCAGGACGCGGGCCCAATTTTGGTCCCCCAGA
TTTTCTCCTAGGATTTGCCCTGCGTGTTCTGTCTGTAGAATCT-------AATTACAAGAGAAGATAGAGCTGTAGTTGG
CGTTCTT---------GGTGAGGTGAGCTGCGCGCATGGCGTGAGCACGCCGGCGGTGTACGTTGAGATCTGTGAGT--G
AACGTGAATGGAATTTTGGCTGGCAT----ATTCAATAAATGTATGACGCTTGCTTGGTTGCTCTCCAGATCGATTT---
--CCAATTGAAATTGCCACACTTTTCGTTTGGGTGGGTGATA--------------------------------------
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>chr7B_692
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-------------------------AGTAGCACCTGGGGGAG------GCAGAGCAGAGCTGGCAAGCA--AAGCAAAGC
TCCAT-----CGCGCCGCACCGCGCCGAGCGGTTTCTTTTCCCCGCTCTCTCTCACCCCACCTCCCGCGCGCCACCTATA
AATACCTCCTCCCTCCCC-CCTCCTC---------TCTCCCACTCAGTCGTCAGACGTCGCAGCCACAGAGAACAAGCGA
GAAACCACTCTAC--------GCACGCCCAGAGAAAGAGGAAGAAACAGAGAG--------------AAAGAGAGATCGA
TATCCGTGTGA------TCATCATGAGGCCGATCAGGGAAGGCGAGGCGCTGGTGGGAGTCGCCGGGGCTCCGGGGGCGG
CGGCCGGCCACGGCGCGCACCCGGAGCTGTGGAGGACGCCGACGCCGTACCACTTCCTCGGCTTCGCGCTCATGATGGGG
CTCATCGCCGTCGCGCTGCTCGTGCTCGTCTGCACGCGCCGCAAGCCGTCGGG---CTCGTCGCGGCGGGGGACCGCCGG
CGAGGACGCGTCGGCGCGCGGGATGGCGCCGCTCGACAGGGAGCCCAAGGTCGTCGTCATCATGGCCGGCGACGACATGC
CATCCTTCCTCGCCAGCGCCAGGCCATTCGCGTTCCCTGA------------CG---CCGTCGAGCCGCCACGCCAGGCG
GACGCGGTCTAAGCGCGCGCGC--------CGCCCGTGTGCC----CTGCGGGACGCGGGACCAA---------------
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>chr7B_1006
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------------------------------------------------------------------------------GG
CGGCCGGCCACGGCGCGCACCCGGGGCTGTGGAGGACGCCCACGCCGTACCTCTTCCTCGGCTTCGCGCTCATGATGGGG
CTCATCGCCGTGGCGCTGCTGGTGCTCGTCTGCACGCGCCGCAAGCCGTCGGG---CTCGTCGCGGCGGGGGACCGCCGG
CGAGGAGGCGTCCGCGCGCGGGATGGCGCCGCTCGACCGGGAGCCCAAGGTCGTCGTCATCATGGCCGGCGACGACATGC
CGTCCTTCCTCGCCAGCGCCAGGCCGTTCGCGTTCCCC---GCCGTGAACGCCGCCGAAACCGGCGAGCAGCGGCAGGTG
GACGCGGCGTAGGCGCGACGCC--------CGCCCGCCCGCCCGTGTAAC----CGCGGGACCAATTTTGGCCT------
-------CTAGGATTTTCCCTGCATGATCTGTCCGTAGAATCTACAACTCAATTAGCAGAGAAGATAGAGCTGTAGTGGT
TTGCGTTTCTTGGTGAGGTGAGGTGAGCGGCGCGCATGGCGTGAGCGCGCCGGCGGCATATGTTGAGATCTGTGAA----
--AGCGAATGGAATTTTGGCTTGCATCTTCATTCAATAAATGCACGATGCTTGCTTGGTTGCTCTCCAATTCGATTT---
--CCACTTGAAATTTCGGCGCTTTTCGTTTGGGTGCGCGGTAGTATAAA-------------------------------
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>chr7D_1007
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-------------------------------------------------------------------------------G
CGGCCGGCCACGGCGCGCACCCGGGGCTGTGGAGGACGCCGACGCCGTACCTCTTCCTCGGCTTCGCGCTCATGATGGGG
CTCATCGCCGTGGCGCTGCTCGTGCTCGTCTGCACGCGCCGCAAGCCGTCCGG---GTCGTCGCGCCGGGGGAGCGCCGG
CGAGGACGCGTCGGCGCGCGGGATGGCGCCGCTCGACCGGGAGCCCAAGGTCGTCGTCATCATGGCCGGCGACGACTTGC
CGTCCTTCCTCGCCAGCGCAAGGCCGTTCGCGTTCCCTGTTGCCGTGAACGCCACCGACTCCGGCGAGCAGCGGCAGGAG
GACGCGGCGTAGGCGCGACGCC--------CGCACGCCCGCCCGTGTGAC----CGCGGGACCAATTTTGGCCT------
-------CTAGGATTCCCCCTGCGTGATCTGTCCGTAGAATCT---ACTCAATTAGCAGAGAAGATAGAGCTGTAGTGGT
TTACGTTTCTTGGCGAGGTGAGGTGAGCGGCGCGCATGGCGTGAGCGCGCCGGCGGCGTATGTTGAGATCTGTGAATGCG
AAAGCGAATGGAATTTTGGCTTGCATCCTCATTCAATAAATGCATGATGCTTGCTTGGCTGCTCCCCAATTCGATTTGAT
TTCCACTTGAGATTTCAGCGCTTTTCGTTTGGGTGGGCGGTAT-------------------------------------
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>chr7A_1635
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---------------------------------------------TAAAGAGGTAAAAGCACGGCAGATTCAGGAACTTG
TCCGGTCCGTAACGTTTCAGCCCACAAACTTGCAAAACTCCACTCCGCCATCCACAAACTTGCAGCCCATGTGCAAAAAC
ACCCAAAGCCAATCCCGTTGCGACATCTGGCCGAGGCGGGGCCGAGGCGGTCGTCGCTCCCTTTTGCAGAAACCCCCCTG
GCATTTACCAGTACTGAACCCGCACTCCACATCTATCGTTCCCCATTCCAACTGCTGCCAAATCCCTAGTTTCTCTCCTC
TCGTTCCCCTCTGTATCGCCCGACGCGGACGCACCGGCATACGCAGCTCTTGCTCGCTCTCTGCCTACGCGCTCTGCTTC
TGCAGCCCGACGACGGATGGCATGTACGGGCGGCAGAGCAGAGGTTAGAGACGAGGGCGACAGTTGATTCAGTATAGAAA
GAAGACTGGCTGTACTAACACAAAACGCTACTCGTATTCAGTTGGCAAAGGACAATAGAGCACAACGGCAGATCCTGGGT
TTGAAACCCAGGCCAAACCCTTTTTTTTTTGCCATTTTTAACATAGAAAAGATTCAGACTGAAACATAGAAATCAGTTCG
GAATTTGCTGTACATATGT-------------------------------------------------------------
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>chr4A_1636
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----------------------------------------------AAAGAGGTAAAAGCACGGCAGACCCAGGAACTTG
TCCGGCCTGTGATGTTTCAACCCACAAACTTGCAAAACTCCACTCCGCCACCCACAAACTTGCAGCCCATGTGCAAAAAC
ACCCAAAGCCAATCCCGTTGCGACATCTGGCCGAGGCGGAGCCGAGGCGTTCTTCGCTCCCTTTTGCAGAAACCCCCCTG
ACATTTACCAGTACTGAACCCGCACTCCACATCTAT--------------------------------------------
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-------------------------------------------------------GGCGACAGTTGATTCAGTATAGAAA
GAAGACTGGCTGTACTAACACAAAACGCTACTCGTATTCAGTTGGCAAAGGACAATAGAGCACAATGGCAGATCCTGGGT
TCGAAACCCGGGCCAAACCC--TTTTTTTTGCCATTTTTAACATAGAAAAGATTCAGACTGAAACATAGAAATCAGTTCA
GAATTTGATGTATATATGTGGTTTGGCAAACTCTGTTTTGCCCTGTCGTTTCATCTCTCCACAGAACTCGCGCGCTGTGG
CGACGGTTCTGCTCCAAGATGACGTCATCCGTCTCGGCGGCGTCGCCGGCGACCGGCGCAGGCATGGAGCCACCGGAATC
CGTCGGTTTCGTCCGTGAACCTGGAGCTATCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCTGTTATGCTCTGTTCTGCGCCAGTCTTGTTGCGTCTTTTGTGGGGGTGGGGGT
TTGGTAGGGTTCTTGAACTAGGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----S----------------------------S-S-----S
-S----S--S---------------S---S-SS-SSSSS----S-------S---S-SSSS-SS-----------SS---
S---------------S---------S-----------------------------------------------------
---------S-----------------------------------------------------S-S---------S----
---------------------S-S--------------------------------S--S-------S-----------S
----SSSSSSS------------------------------------------S--------------------S-----
--------------------------S--------SSS------------------------------------------
--S------------------S---S----S----------------S--S--S-----------S-SSS-S-S-SS--S
SS-SSSSSS-S-S-------------------------------------S-----------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------S-----
---S--------------S---------S------------S-----S-------------------------S------
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---------------------------------------S----------------------------------------
-------------------------S------------------------------------------------------
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-------------------------------S----------------S-------------------------SS----
--------------------------------------------------S--------------------------S--
--------------------------------------------------------------------------S-----
-----------------------------------------------------------S--------------------
-----S--------------------------------------------------S-----------------------
-------------------------------------------------------------------------S--S---
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-----------------------------------------------------------------------------S--
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--------------------------S---------------------------------S-------S-----------
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---------S-----------------------------------S-------------------------S--------
-------------------------------------SS-SSSSSSSSS-------------------------------
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>forward_611
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-------------------------------GATCTCGCCACCTATGCTGT-----------------------------
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>reverse_1737
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--------------------------------------------------------TGCTGCTCTCCAGTTCGATT----
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