>input_sequence_83504
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-----------------------------------------------------------------ATGGCTGGCGTGGCG
GCGCCGGCAGGGGCGGCGTTGGCGGGGGGGCTCACGACGCCCGAGGTCGATGCGGCCAAGCTGCTCCTCCAGCTCAGCGA
GAGCAGCGCCACATCAGGCGGCTCCTCCTCCTCCCTGCGCTCCCTGAACGCCGAGCCGGCGCCAGCGCCGGGGGCCTTGG
TTCTTGGTGATTGCGTGGACTGGGAGGAAGATGACGAGCACGAGGTGCCCGGGAGCCAGCACAGGATGAAGCGCTACCGC
CTGATCACCGAGATCTATGCCGCGACGGAGGAAATCGGTGAGTGCAGCGGCAGCGGCCGGAAGAACAAGAAGAAGGAATA
G-------------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G333800
TAGTAATAAGGACATGTAGGTTTGCGACCAGAAAAGACCATCC----ATAGGGAGGACCTCTCTAATGGCACTCGACGTG
TGACACAAAACCATCTATATGACCTTACCCCCCATGGTCC-CCGAGATGATA----TTTTTCC-----------------
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--------------------------------------TTAACTGGGTAGGAGGATGCAATATTTTT-TTTCTCAAAGGC
TATGATGCTCTACTATTTAAGTTTTT-CAGGATGCAGGAATCATCAAACACCGGATTCCTTCGTTGGGGAGAGAAATGGT
GAGGGAGAAGTCCCATGGAGTCTGAGATGGCCGGTAGGATTGTGTTGATGAGTTACTCCAATTACAATTAGCACATGTAA
CAAC--ATGACATATTTAGCGATAACTATGA----------------------CTGATGTATTGTATCTCCATAGCCGTC
TGAATATGTAACGGTGACCGCGATAAGAACAAGTGTTAAACTAGGATGAAAACAAGTTGCATGCCGCATAC-CATGACCA
CAAGTAATGGTTAATCGGAAAATATTTGCAGCGGGTATGTATGGGAGTGATGACTTCAAGCACGACGTATCGATGACTGT
CTGATCTGGCGACACGCTGGCCACAGTTGGCTGGATACGCTATGCACTGGATCGGTGGACGGCTCACGATGTGTAGG---
-----TGTGTGTTGCGACGCGAACGTTCACCACAGATTACGTACTAATACATGTGTGA-AACCTTGTTGGTCAGGCCAAA
TGGATTCGGGGTCATATAATGATATTAATGC-AGCCACCCAGGGAAGTAATTAAAGCGTATCCAGAAAAGCAATTGGAAA
ATAGAGAAATAAAACCCAAGCCTTCTCTTCAAAAGCAACGAAAAGGAGAAGAGAAATTAACTAGGAGCCAAAGA----CC
AGACGGGGGAGAGAGAGGGGGGAGGAGGCGAAATAAGGCAACGCACGTGTCCGCGGCGACCCAACCCCACCAATCGCCCA
CGAAAGCCCTACAGCCCGAGGCACAGCCGGCGAAGGGGAAGATCGAGCCGAAGCCCAAGACGAAGATGGCTGGCGTGGCG
GCGCCGGCAGGGGCGGCGTTGGCGGGGGGGCTCACGACGCCCGAGGTCGATGCGGCCAAGCTGCTCCTCCAGCTCAGCGA
GAGCAGCGCCACATCAGGCGGCTCCTCCTCCTCCCTGCGCTCCCTGAACGCCGAGCCGGCGCCAGCGCCGGGGGCCTTGG
TTCTTGGTGATTGCGTGGACTGGGAGGAAGATGACGAGCACGAGGTGCCCGGGAGCCAGCACAGGATGAAGCGCTACCGC
CTGATCACCGAGATCTATGCCGCGACGGAGGAAATCGGTGAGTGCAGCGGCAGCGGCCGGAAGAACAAGAAGAAGGAATA
GGCGAGGAGAGATGAGAGGGGAGGGGGGCTTTCCTGTAATTAATGTAATTTCTCGGGTGTAGCTCGTAGTTCCAGCTTGC
AGCCCTCTCCTTCCTCTCGCCGGGAGGAGTCGCTATCGATCTTTGCTGTAATACTTCATCTTTGTGTTAAGAATTAACTG
GTTGGTTGGAGGCTTGGAGCTGAATCCATTCATGGCGGCTTCTGAATTCTCTTCTGAATTGGTTTGGTCCCAGACTTCTA
TCCCCGTACTGTGCTACCTAGTCTGGATCTCGGCGATAGACAGATCGGTCGCCTTTGCAGATCGATGATCTCCGGGGCGA
AGACGATCGTATCAGCTCCGGCCATGGATTCCGCTTGGTAGCTCGCTATTCTGCGCGGCGCAGCCAACAATCGATGCCTC
CGTGCATGCAGTTTTAGTAATTAAGCATTTCCAGGCGCCTACGACCGTGATTCGCAAAATGGACGGATCCATCTATTCGT
GAAATTTGGTGTTTAGTTTGTTTGATTTGGAAACGACGAGGTGCGCTGCACTGGTTTGGGACTCCAATTTCCAGCAGAAA
TGTTTGATCTGTGTG-------T--------------------------------------GCCTAATGGCCGGAGTCTC
TTGATCCGGCAGGAAGCATGTTCTGACCGATACAACACTTGCCTCTTCGTATTGGTTTGTCAATGGAATGTTCCAGAAGA
TAGCTTCCATGAGCATCCAGGATTGGTGACAATGCAAGCTCGCCATGCGAGAGTTCCAATTTTTTGCATCCCCCTGTACG
T----GGGTTTCCAGTTTCCTTTATAAACAACGATCGAGCTTGTCATCTCATATGACTGATATGAGGCTACAGATAAATA
------TATTCTAAGAT--TTTTTTTCCCTGTATGCAGTTGTACCTATAAGATCTATGGAAATGTAATCCTCCTTGTAGC
AGCCA--GAGATCGACC-GACTGTTTGAAACTGGTCTTTGTGATATGTTCACAACGTAAGCAACTAGTAGTTTATCTTAG
CTCCCACGCAGATATATTCTT
>chr5A_1
TAGTAATAAGGACATGTAGGTTTGTGACCAGAAAAGACCATCC----ATAGGGAGGACCTCTCTAATGGCACTCGACGTG
TGACACAAAACCATCA--ATGACCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACTGGGTAGGAGGATGCAACATTTTT-TTTCTAAAAGGC
TATGATGCTCTACTATTTAAGTTTTTTCAGCATGCATGAATCATCAAACACCGGATTCCTTCGTTGGGGAGAGAAATGGT
GAGGGAGAAGTCCCACGGAGTCTGAGATGGCCGGTAGGATTGTGTTGATGAGTTACTCCAATTACAATTAGCACATGTAA
CAAC--ATGACATATTTAGCGATAACTATGA----------------------CTGATGTATTGTATCTCCATAGCCGTC
TGAATATGTAACGGTGACCGCGAGAAGAACAAGTGTTCAACTAGGATGAAAACAAGTTGCATGCCGCATAC-CATGACCA
CAAGTAATGGTTAATCGGAAAATATTTGCAGCGGGTATGTATGTGAGTGATGACTTCAAGCACGACGTATCGATGACTGT
CTGATCTGGCGACACGCTGGACACAGTTGTCTGGATACGCTATGCACTGGATCGGTGGACGGCTCACGATGTGCAGG---
-----TGTGTGTTGCGACGCGAACGTTCACCACGGATTACGTACTAATACATGTGTGA-AACCTTGTTGGTCAGGCCAAA
TGGATTCGAGGTCATATAATGATATTAATGCAAGCCACCCAGGGAAGTAATTAAAGCGTATCTAGAAAAGCAATTGGAAA
ATAGAGAAATAAAACCCAAGCCTTCTCTTCAAAAGCAAAGAAAAGGAGAAGAGAAATTAACTAGGAGCCAAAGA----CC
AGAC--GGGAGAGAGAGGGGGGAGGAGGCGAAATCAGGCAACGCGCGTGTCCGCGGCGACCCAACCCCACCAATCGCCCA
CGAAAGCCCTGCAGCCCGAGGCACAGCCGGCGAAGGGGAAGATCGAGCCGGAGCCCAAGACGAAGATGGCTGGCGTGGCG
GCGCCGGCGGGGGCGGCGTTGGCGGGGGGGCTCACGACGCCCGAGGTCGATGCGGCCAAGCTGCTCCTCCAGCTCAGCGA
GAGCAGCGCCACATCAGGCGGCTCCTCCTCCTCCCTGCGCTCCCTGAACGCCGCGCCGGCGCCAGCGCCGGGGACCTTGG
TTCTTGGTGACTGCGTGGACTGGGAGGAAGATGACGAGCACGAGGTGCCCGGGAGCCAGCACAGGATGAAGCGCTACCGC
CTGATCACCGAGATCTATGCCGCGACGGAGGAAATCGGTGAGTGCAGCGGCAGCGGCCGGAAGAACAAGAAGAAGGAATA
GACGAGGAGAGATGAGAGGGGAGGGGGGCTTTCCTGTAATTAATGTAATTTCTCGGGTGTAGCTCGTAGTTCCAGCTTGC
AGCCCTCTCCTTCCTCTCGCCGGGAGGAGTCGCTATCGATCTTTGCTGTAATACTTCATCTTTGTGTTAAGAATTAACTG
GTTGGTTGGAGGCTTGGAGCTGAATCAATTCATGGCGGCTTCTGAATTCTCTTCTGAATTGGTTTGGTCACAGACTTCTA
TCCCCGTACTGTGCTACCTAGTCTGGATCTCGGCGATAGACAGATCGGTCGCCTTTGCAGATCGATGATCTCCGGGGCGA
AGACGATCGTATCAGCTCCGGCCATGGATTCCGCTTGGTAGCTCGCTATTCTGCGCGGCGCAGCCAACAATCGATGCCTC
CGTGCATGCAGTTTTAGTAATTAAGCATTTCCAGGCGCCTACGACCGTGATTCGCAAAATGGACGGATCCATCTATTCGT
GAAATTTGGTGTTTAGTTTGTTTGATTTGGAAACGACGAGGTGCGCTGCACTGGTTTGGGACTCCAATTTCCAGCAGAAA
TGTTTGATCTGTGTGTGCCTACT--------------------------------------GCCTAATGGCCGGAGTCTC
TTGATCCGGCAGGAAGCATGTTCTGACCGATACAACACTTGCCTCTTCGTATTGGTTTGTCAATGGAATGTTCCAGAAGA
TAGCTTCCATGAGCATCCAGGATTGGTGACAATGCAAGCTCGCCATGCGAGAGTTCCAATTTTTTGCATCCCCCTGTACG
TACGTGGGTTTCCAGTTTCCTTTATAAACCACGATCGAGCTTGTCATCTCATATGACTGATATGAGGCTACAGATAAATA
------TATTTTAAG---ATTTTTTTTCCTGTATTGAGTTGTACCTATAAGATCTATGGAAATGTGATCGTCCTTGTAGC
AGCCAGAGAGATCGACC-GACTGTTTGAAACTGGTCTTTGTGATATGTTCACAACGTAAGCAACTAGTAGTTTATCTTAG
CTCCCACGGAGATATATTCTT
>chr5B_1
TAGTAATAAGGACATGTACCTTTGGGACCAGAAAAGACCATCCATATATAGGGAGGACCTCTCCAATGGCACTCGACGTG
TGACACAAAACCTTCA--ATGACCTTACCCTCCATGATCCCCCGAGATGATATTTTTTTTTCC-----------------
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--------------------------------------TTGACTGGGTAGGAGGATGCAACATTTTTATTTCTAAAAGGC
TATGGTGCTCTTCAAACACTGC--------------------------------ATTCCTTTGTTAGGGATAGAGATGGC
GAGGGAGAAGTCCAAC-GAGTCTGAGATGACCGATAGTATTGTGT---TGAGTTACACCAATTACAATTAGCACATGCAA
CAAC--ATGACATATTTAGCGATAACAATGAGTGTGACGCCGTTGAATTGCAACTGCTGTATTGTGTCTCCCTAGCCGTC
TGGATATGTAACGGTGACCACGATAAGAATGAGTGTTAAACTAGGCCGAAAGCAAGTTGCATGCAACATATACATGACCA
CAAGTAATGGTC-ATCGGAAAATATTTGCAGCGGGTATGTACGCGAGTGACGACTTCAAGCACAACGTATCGATGACTGT
CTGATCTGGCGACACGCTGGACACAGTTGACTGGATATGCTATGCACTGGATGGATGGACGCCAAACGATGTGGCAGGTG
TGTGTTGGGAGTTGGGACGCGAACGTTCACCTTGTGGAG--------TACATGTGTGA-ACC----TTGGTCAGGCCAAA
TGGATTCCGGATCATTTAATGATATTAATGCAAGCCACCCAGGGAAGTAATTAAAGCGTATCCAGAAAAGCTATTGGAAA
ATAGAGAAATAAAACCTAAGCCTTCTCTTCAAAAGC-----AAAGGAGAAGAGAAATTAACTAGGAGCCAAAGAAAGACC
AGAC--GGGAGAGAGAGAGGGGAGGAGGCGAAATCAGGCAACGCGCGTGTCCACGGCGACCCAACCCCACCAATCGCCCA
CGAAAGCCCTACAGCCCGGGGCACAGCCGGCGAAGGGGAAGATCCAGCCGGAGCCCAAGACGAAGATGGCTGGCATGGCG
GTGC---------CGGCGTGGGTGGGGGCCCTCACGTCGCCTGAGGTCGACGCGGCCAAGCTGCTCCTCCAGCTCAGCGA
GAGCAGCGCCTCATCTGGCGGCTCCTCCTCCTCCCTGCGCTCCCTGAACGCCGCGCCGGCGCCAGCGTCGGGGGCCTTTG
TTCTTGGTGGTTTCGTGGACTGGGAGGAAGATGACGAGGAGGAGGTGCCCGGGGGCCAGCGCAGGGTGAATCGCTACCGC
CTGATCACCGAGATCTATGCCGCGACGGAGGAAATCGGTGTTTGCGGCGGCAGCGGCCGGAAGAACAAGAAG---GAATA
GACTAGGAGAGATGAGAGGTGA-GGGGGCTTTCCTGTAATTAATGTAATTTCTCGGGGGTAGCTCGTAGTTCGAGCTCGC
AGCCCTCTCCTTCCTCTCAACGGGAGGAGTCGCTATGGATCTTTGCTGTAAAACTTCATCTTTGTGTTAAGAATTTACTG
GTTGGTC--------GGAGCTGAATCCATTCATGGCGGCTTCTGAATTCTCTTCTGAATTGGTTTGGCTCCAGACTTATA
GCCCCGTACTGTGCTGCCTAGTCTGGATCTCGGCGATAGACAGATCGGTCGCCTTTGCAGATCGATGATCTCCGGGGCGA
AGACGATCGTATCAGCTCCGGCCATGGATTCCGCTTGGCAGCTCGCTACTCTGCGCGGCACGGCCAACAATCGATGCCTC
CGTGCATGCAATTTTAGTAATTAAGCATTTCCAGGCGCCTACGACCGTGATTCGCAAAA-GGACGGATCCATCTATTCGT
GAAATTTGGTGTTTAGGTTGTTTGATTTGGAAACGACGAGGTGCACTGCACTGGTTTGGGACTCCAATTTCCAGCAGAAA
TGTTTGATCTGTGTGGGCAGAGCAGACTGCACAGAAATGTAGATCAGTAGATATGGTGGACGCCTAATGGCCGGAGTCTC
TTGATCCGGCAGGAAGCATGTTCTGACCGATACAACACTTGCCTCTTCGTATTGGTTTGTCAATGGAATGTTCCAGAAGA
TAGCTTCCATGAGCATCCAGGATTGGTGACAATGCAAGCTCGCCATGCGCGAGTTCCAATTTTTTGCATCCCCCTCTACG
T----GGGTTTCC--TTTCCTTTATAAACCACGATCGAGCTTGTCATCTCATATGACTGATATGAGGCTACAGATAAATA
CTCCTATATTCTAAGATTATTTTTTTTGCTGTATGCAGTTGTACCTATAAGATCTATGGAAATGTAATCCTCCTTGTAGC
AGCCAGAGAGATCGACCAGACTGTTTGAAACTGGTCTTTGTGATATGTTCACAACGTAACCAAACTA-------------
---------------------
>chr5D_1
TAGTAATACAGACATGTAGGTTTGTGACCAGAAAACACCATCC----ATAGGGAGGACCTCTCTAATGGCACTCGACGTG
TGACACAAAACCATCA--ATGACCTTACCCCCCATGGTCCCCCGAGATGATA----TTTTTCC-----------------
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--------------------------------------TTAACTGGGTAGGAGGATGCAACATTTTT-TTTCTAAAAGGC
TATGATGCTCTGCTATTTAAGATTTTTCAGGATGCAGGAATCATCAAACATCGGATTCCTTCGTTGGGGACAGAAATGGA
GAGGGAGAAGTCCCACGGAATCTGAGATGGCCGGTAGGATTGTGTTGATGAGTTACTCCAATTACAATTAGCGCATGTAA
CAACATATGACATATTTAGCGATAACTATGAGCGTGACGCCGTTGAATTGCAACTGATGTATTGTATCTCCATAGCCGTC
TGAATATGTAACGGTGACCGCAATAAGAACAAGTGTTAAACTAGGATGAAAACAAGTTGCATGCCACATAC-CATGACCA
CAAGTAATGGTTAATCGGAAAATATTTGCAGCGGGTACGTACGGGAGTGATGACTTCAAGCACGACGTATCGATGACTGT
CTGATCTGGCGACACGCTGGACATAGTTGGTTGGATACACTATGCACTGGATTGATGGACGGCTCACGATGTGCAGG---
-----TGTGTGTTGCGACGCGAAC-TTCGCCACGGAT----TACTAATACATGTGTGAAACC----TTGGTCAGGCCAAA
TGGATTCGGGGTCATATAATGATGTTAATGCAAGCCACCCAGGGAAGTAATTAAAGCGTATCCAGAAAAGCAATTGGAAA
ATAGAGAAATAAAACCCAAGCCTTCTCTTCAAAAGCAAAGAAAAGGAGAAGAGAAATTAACTAGGAGCCAAAGA----CC
AGAC--GGGAGAGAGAGGGGGGAGGAGGCGAAATCAGGCAACGCGCGTGTCCGTGGCGACCCAACCCCACCAATCGCCCA
CAAAAG--------------------------------------------------------------------------
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>SNPs
------------------------S-------------------------------------------------------
---------------SSS--------------------------------------------------------------
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------------------------------------------------------------S------------S------
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---------------S----------------------------------------------------------------
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--------------------S----------------------------------------------------S------
---------------------------------S----------------------------------------------
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--------------------------------------S-----------------------------------------
----SS----------------------------S---------S-----------------------------------
--------------------------------------------------S-----------------------------
--------S-----------------------------------------------------------------------
-----------------------------------------------------S--------------------------
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-S------------------------------------------------------------------------------
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-----------------------------S--------------------------------------------------
--------------------------S-----------------------------------------------------
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--------S------------
>forward_1045
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-----------------------------------------------------------------TAGGAGCCAAAGACC
AGACG---------------------------------------------------------------------------
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>reverse_2350
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-----------------------------AACGATCGAGCTTGTCATCTCA-----------------------------
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