>input_sequence_83501
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATGGAAATGGGAGACAAGGCGGTCGGCCT
TGTGTTGACCATGACGAGTTTATCCATCTTTACCTACTACACTTTCTGGGTCATAATCTTGGTTAGTAACTTCTGGGCAT
TACATGCTTCATTTCTA---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TATGTTTCTGTGTTAATGTATCGATGGTGATTTTGTTTCTCTTTTCCCAACTAGCCA
TTTGTTGACGATGACCATTTTGTCCACCAATACTTTCTACCTCAAGAATACGCCATCTTCATCCCTGTGTTTGCCGGTGT
GGTGCTACTTTCGTTCTTAAGTATATTCATCGGTCTTGTGATGCTGAAATCGAAGAAAAAGAAGGCTGCTTGA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>chr4D_1_TraesCS4D01G074400
TGAAATCTCGCATATCATTGAAATTCAACAAAGGATGAATTACCTTTTGCAGTATCTCCTAGATGCATCATGTGTAATGT
GACTCCATGTCGTTAGAAAATTCTTATATTCTTGAAAAAGGGACAGCAAAATCTTAGTTATTGTAGTAGCACCACTGCCC
ATAACAAAGCATGATCTAGCCGATGAAAGGTGTTCTGTTAATCCATTTCAAAAGAAAGGTGTTCTGTTGGCAGCTATTTT
TTGGTATACTGAATATATGTAAGCATCAAACAAGTTTCATTGTACAAGGTTTTTGTGTTCTTCATGTA---------AGA
AGTTTGCAGGACTAGCAGTGGTCGGTGGAGATGATTTATCTGCGTACTTGTTGACTTCATGACTTTGTTGCTTCTTCACC
GCCCTGAAAATAATAGCTCTGTATTTCGGTTGTCCCAAATGACATGTGACACCTTGAACTCTATTTGGTTGGTGCTTAGG
AATTCAGTGAGCAAGTTTTACTTGCTGCAACATTGAAATGCAATGCTTGTTGGTTGGTTGCTTACTGAATTCAGGCTGAG
TTCCCCAGTTGTCGTATTTGCAATATGAGATTTACCTAGTATTGCGTCCATTAGTCGTCAAAAGTTCAGCAAAATATGAT
AATGCAGAAATATTTCGCCTAAATTTAGGCCGAAAGTATAATATGGCATTGGTCATGGCACAATCG-AGTTAATGCTTAC
ACTAGATATCTGGTTGATGATTTTGCATCTAGTGTAGTTTATTGCTCTATCGGTGGAGTGGTTGCTCAGGTTTATTACAT
-ACCATGTTGCACCTCAGAGTACACCAGGACTTTTGGTATTATTATGGAGTATTTATTTATTTTGATGTAGTTTCACTAT
CTTGACACTCCATTTTATGAACCTTACCGTGTGAAGTTATTTGGATACTCACCATGTTTGCATTTACCTGTATGCAGGAA
ACCCATTTGTGTATCTCAAATCAAGAGTAGGTTCCTACAAATTCTGAAGAAATGGAAATGGGAGACAAGGCGGTCGGCCT
TGTGTTGACCATGACGAGTTTATCCATCTTTACCTACTACACTTTCTGGGTCATAATCTTGGTTAGTAACTTCTGGGCAT
TACATGCTTCATTTCTA---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TATGTTTCTGTGTTAATGTATCGATGGTGATTTTGTTTCTCTTTTCCCAACTAGCCA
TTTGTTGACGATGACCATTTTGTCCACCAATACTTTCTACCTCAAGAATACGCCATCTTCATCCCTGTGTTTGCCGGTGT
GGTGCTACTTTCGTTCTTAAGTATATTCATCGGTCTTGTGATGCTGAAATCGAAGAAAAAGAAGGCTGCTTGATGGATTT
GGCGACTCCCCCGCTGTTCCAGTGGAATTTCTGGTTTACTTGTAGAACCTAGTAGACAGGTTTCGTGGATGATTGTATTT
CATTGAGTCGCCTTCACTTGTGATCCAAGGCTTTCTCGTGACTGCGTGTTC--------------TTGGTAGTTATCGAT
CGCAAGGTGTATGCCATTCCAAGAATAAACATGGGTCAAATATCAAGTGTTGTTACATCGATAATTCTCGGATGATGTGT
TTGATCAATGTAGTCGGCACTCAACATGTATCATGCTTCTGCTTCTGTGTAGTTCTCTTTTGGTGCGGGTACAAAAGTTT
GACATAAAGCTACAGCACTGCCCGGGTACATGTATCCATCTTTTACGGCTAGGACTATTGGGGTCTCTAAACTCATTTTC
GTCTCTCGGTGTCAATGTCAGCCAAAGTGCTTTCGTCAGTGAACCCGGAAGCACATGATCGCTCCAAATGGTCGAAAATG
TAGAACCTAGCAGACTCTTTTCAGAACCAACCATAAATAGGGTGAACAAGGGAATAGTTATATTCTCTTAGTTATTCATG
TGACATAGGAAAAACAATTACTCCCTCGATCCATATTACTTGTCGCTCAAATGAATATATATAGCACTGAAATAGATACA
TCTGTTTAAGCGACAAAGTAATATGAATCGGATACAGTACTAGTATTTCTGAAGCCTCGGGAGTTCTACAACAAAAGGCT
AAAGTACTTTCTGACTCTAAAACATTTTCCCCATGTTTTCACTGAAATGAAGTAGATTGACATTCCTTGAGCAAAATT-A
TTAGACTACCAATAAATCAAAACGAAAAATACAAAACCATAGATAACCACCACTGAACAATGGGTGCACACAAATACAGA
AACGACGTCTAGACTCTCTAGAGGAGCTACTGGGAAAATAAATATCAAGAACGTTCTCAAACAAAAATTACGGCGCCACT
AACGAAAAGTCATATGC-AGGGTACAGAATGTTATATCTTCGCGTTCAT
>chr4A_1
TGAAATCTCGCATATTATTGAAATTCAACAAAGGATGAATTACCTTTTGCAGTATCTCCTAGATGCGTCATGTGTAATGT
GACTCCATGTCGTTAGAAAATTCTTATATTCTTAAACAAGGGACAGCAAAATCTTAGTTGTTGTAGTAGCACCACTGCCC
ATAACAAAGCATAATCTAGCTGATGAAAGGTGTTCTGTTAATCCGTTTAAAAAAAAAGGTGTTCTGTTAGCAGCTATTTT
TTGGTATACTGAATATATGTAAGCATCAAAAAAGTTTCATTGTACAAGGTTTTTGTGTTCTTCATGTA---------AGA
AGTTTGCAGGACTAGCAGTGGTCGGTGGAGATGATTTATCTGCGTACTTGTTGACTTCATGACTTTGTTGCTTCTTCACC
ACCCTGAAAATAATAGCTCTGT--TTCGGTTGTCCCAAATGACATGTGACACCCTGAACTCTATTTGGTTGGTGCTTAGG
AATTCAGTGAGCAAGTTTTACTTGCTGCAACATTGAAATGCAATGCTTGCTGGTTGGTTGCTTACTGAATTCAGGCTGAG
TTCTCCAGTTGTTGTATTTGTAATATGAGATTTACCTAGTATTCCGTCCATTAGTCGTCAAAAGTTCAGCAAAATATGAT
AATGAAGAAATATTTCGCCG-----------------------------------TGGCACAACCG-AGTTGATGCTTAC
ACTAGATATCTGGTTGATGATTTTGCATCTACTGTAATTTATTGCTTTAGCGGTGGAGTGGTTGCTCAGGTTTATTACAT
-ACCATGTTGCACCTCAGAGTACATCAGGACTTTTGGTATTATTATGAAGTATTTATTTATTTTGATGTAGTTTCACTAT
CTTGGCACTCCATTTTATGAACCTTACCATGTGAAGTTATTTGGATACTCACTGTGTTTGCATTTATCTGTGTGCAGGAA
ACCCAATTTTGTATCTCAAATCAAGAGTAGGTTCCTATAAATTCTGGAGAAATGGAAATGGGAGACAAGGCAGTCGGCCT
TGTGTTGACCATGACGAGTTTATCCATCTTTACCTACTACACTTTCTGGGTCATAATCTTGGTTAGTAACTTCTGGGCAT
TACATGCTTCATTTCTA---------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TATGTTTCTGTGTTAATGCATCGATGGTGATTTTGTTTCTCTTTTCCCGCCTAGCCA
TTTGTTGACGATGACCATTTTGTCCACCAATACTTTCTGCCTCAAGAATACGCCATCTTCATCCCTGTGTTTGCCGGTGT
GGTGCTACTTTCGTTCCTAAGTATATTCATCGGTCTTGTGATGCTGAAGTCGAAGAAAAAGAAGGCTGCTTGATGGATTT
GGTGACTCCCCTGCCGATCCAGTGGAATTTCTGGTGTACTTATAGAACCTAGTAGACAGGTCTTGTGGATGATTGTATTT
CATTAAATTGCCTTCGCTTGTGATCTAAGGCTTTCTCGTGAC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>chr4B_214
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GAAAGGTGTTCTGTTAGCAGCTTTTTC
TTGGTATACTGAATATATGTAAGCATCAAAACAGTTTCATTGCACAAGGTTTTTGTGTTCATCATGTAGCTCATATGAGA
AGTTTGCAGGACTGACAGTGGT-GGTGGAGATGTTTTATCTGCATACTTGTTGACTTCATGACTTTGTTGCTTATTCACC
ACCCTGAAAATAATAGCTCTGTATTTCGGTTGTCCCGAATGATATGTGACACCCTGAACACTATTTGGTTGGTGCTTAGG
AATTCAGTGAGCAAATTTTACTTGTTGCAACATTGAAATGTAATGCTTGCTGGTTGCTTGCTTATTGAATTCAGGCTGAG
TTGTCCAGTAGTTTTATTTCCAATATGAGATGTACCTAGCATTATGTCCATTAGTTATCAAAAGTTCAGCAGAATATGAC
AATGCAGAAATATTTCGCCTAAATGTAGGCCAAAAGTATAATATGGCATTGGGCATGGCACAATCGCAGTTAATGCTTAC
ACTAGATATATAGTTGATGATTTTTCTTCTACTGTAGTTTGTTGCTTTAGCGGCGGAGTGGTTGCTCAGGTTGATTACAT
TACCATGTTGCACCTCTTAGTACATCAGGACTTTTGGCATTATCATGTAG----TATTTATTTTGATGTAGTTTCACTAT
CATGGCACTCCATTTTATGAACCTTACCGTGTGAAGTTATTTGGATACTCACCGTGTTTGCATTCATCTATATGCAGGAA
GCCCATTTTTGTATCTCAAATCAAGATTAGGTTCCTATAAGCTCTGAAGAAATGGAAATGGGTGACAAGGCGGTCGGTCT
TGTGTTGACCATGACGAGTTTATCCATCTTTACCTACTACACTTTCTGGGTCATAATCTTGGTTAGTAACTTCTGGGCAT
TACATGCTTCATATCTAATATACTCCCCCCGTTCCTAAATATTTGTCTTTTTAGAGATTTCAAATGGACTACCACATACG
GATGTATATAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCATTTGTTGAAATCTCTAGAAAGA
CAAATATTTAGGAACGGAGGGAGTATGTTTCTGTGATTATGTATTGATGGTGATTTTATTTCTTTTTTCCCACCTAGCCA
TTTGTTGACGATGATCATTTTGTCCACCAATACTTTCTACCTCAAGAATACGCCATCTTCATCCCTGTGTTTGCCGGTGT
AGTGCTTCTTTCGTTCCTAAGTATATTCATCGGTCTTGTGATGATGAAGTCGAAGAAAAAGAAGGCCGCTTGATTGATTT
GGCGGCTCCCCCGCTGTTCCAGTGGAGTTTCTGGTTTACTTA---AACCTAGTAGACAGGTTTCGTGGAAGATTGTATTT
CATTGAGC-----TCACTTGTGATCTAAGGCTTTCTCGTGGCACTTACAAGCGGGTATTTGCGTGTTGGTAATTATTGAT
CGC-----------------AAGAATAAACATTGGTCAAATATCAAGTGTTGTTACATCGATAATTCTCGGATGATATGT
TAGATCAATGTAGTCGGCACTCAACATGTATCATGCTTCTGCTTCTGTGTAGTTTGACATAATGC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTCTGACTCT-AAACATTTTCTCCATGTTTTCGCTGAAATGAAGTAGATTGGCATTCCTCGAGAAAACAAAA
TTAGACCACCAATAAATCAAAACGAAAAATACAAAACCAAAGATAACCACCACTGAACAATGGGTGCACACAAATACGGA
AAATGAAG----------TAGAAGAGCTACTGGGAAAGAAAAGAA----AACGTTCTCAAATAAAAATTATGGCGTCACT
AACAAGAAGTCATATGCAAGGGTACAAATTGTTATATCTTCACGTTAAT
>SNPs
---------------S--------------------------------------------------S-------------
---------------------------------S--S----------------------S--------------------
------------S-------S-----------------------S---S-------------------S-----------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
S----------------------------------------------------S--------------------------
-------------------------------------------------S------------------------------
---S--------S------------------------------S------------------------------------
------------------------S------S--------------------S---------------------------
-------------------------------S--------------S--S------------------------------
------------------------S----------------------S--------------------------------
----S------------------------------------------------S------------S-------------
--------S----------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
----------------S-------------------------------S-------------------------------
-----------------------------------------S--------------------------------------
--------S----------------S----------------SSSSSSSSS--------------------S----S---
---SSSSSSSSSSSSSSSSS------------S-------------------------------------------S---
-S----------------------------------------------------SSSSS-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----------S----------S----------S------------------S-------S---S---SSS--
------S--------------------------------S-------------------------------------S--
--SSSSSSSSSSSSSSSS----S--------------SS---S-SSSSS------------S--------S----S----
---S-S--------------------S-S------------S----S--
>forward_573
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GGCTGAG
TTCCCCAGTTGTC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_1885
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ACGGCTAGGACTATTGGGGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
