>input_sequence_83496
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-------------------------------------------ATGGCCAAGATCATGTTCGTCCTTCTGCTCCTCTGTC
CCCTCCTCGCCCAATCCCATGCCACCACCACTTTCAAAGAGATTTCATCACAGCTGCAAAACCAGAGATTCGTCGAGTTG
GACGAGGCCCTGCAGAGGGCCCTGCCGCTTCGTCAGCCACCTCCCCCGAGGTCGGTTGTCCTGGACGCTGCCGAAGCAGA
TGCAGTGAAGGAGAGCCTCCTGATCTTGGTGCGGGCTCTCACGGAGGGGCTCAACGGTCGCCCCGGCCTCCTGAGCTTCC
ACAACCAAGGCGAGGAGGAACCCGCGGCGGCGGCGTCACCGAAGGAAACCGTGGCTTGA---------------------
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>chr4A_1_TraesCS4A01G289000
ATGGTAGCATCTAAAGAAATGTGTTCTGAGGTCTTTGGTTCAGTTACAAAACAACATCACAACAGTTATTTCTAAAGTTG
-TTTCCCTCGTACTTAATATTACAGAGTTATAACTGTTGGGCTTTCCAACTGTCCGAAGAATAATTTCCACAAAAAAACG
GTTTTTTTTTTTTTGCCAAAGATAGCAATGAGCCACCACACAACAGTTACATAAGCTGATACAAGAGCAAATCTTT-CAA
TTTTCTCAACTGCTATGCACGGCTTAAAACAGAAGCTCGATCAAACAAATGTATAGATGAAGATGACACATGCCATCCCA
TACAACCTACAGCAGAGTAAGACTGCACTTGAAAAGAGGACGAAAAGTAGGCGTTCAAAGCCAGAAGAAGCAATCTTACA
ATATTTTGCCAAT-TACTTCTGGTGGATATCCAGTTATTTCATAGAGCTAGACCTAGTCTTAGCTTTTCCATGTTTCCAG
TACATCACCAGCATAGATAAACTGTACACTTATAACATAAAGCATTGGAATTGTTACTTTAATCAGATTACATAATGGAC
TTGAATGGATTGACATCTACTATATCAAGTTTACACGATATGACTTCAAGTAATTATTCCAACGTTTCATAAGTGAAACC
GACACATCTACTTGTCTGGGACGTTTTGGATGCTCTTTGCCCTGTAAAGAATAACAAGACCACGTTAGCAATTGTACACA
GAGTCTTTTTTTCCGAGGTTACAGACCCTCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAAAACCTAACATCTTGGCTGCAGTCACACTTCTTGGTCTTCTTGCGTCGGACCTC
ACCTGATAACAATTGTATATAACCCATCTCCATGCAGGCTCCCAGCCAGAGCTACAGTCAAGCGAGAGCCGACAGACACC
AACCACATCCACATTCAGATTCGCAGAGAAGCAAGCAACAAGCATGGCCAAGATCATGTTCGTCCTTCTGCTCCTCTGTC
CCCTCCTCGCCCAATCCCATGCCACCACCACTTTCAAAGAGATTTCATCACAGCTGCAAAACCAGAGATTCGTCGAGTTG
GACGAGGCCCTGCAGAGGGCCCTGCCGCTTCGTCAGCCACCTCCCCCGAGGTCGGTTGTCCTGGACGCTGCCGAAGCAGA
TGCAGTGAAGGAGAGCCTCCTGATCTTGGTGCGGGCTCTCACGGAGGGGCTCAACGGTCGCCCCGGCCTCCTGAGCTTCC
ACAACCAAGGCGAGGAGGAACCCGCGGCGGCGGCGTCACCGAAGGAAACCGTGGCTTGACGTCCTGCATGAAGCGTTTAT
AGTTTATATTCCCCTAAAGCTCCTGTAACCTGTCTGGGGAGCAACTAAGAAGTAGTCTATGATGTAATCCTTCTGTCCTG
TGCACGCGCCGTCAGTCTAATGTGGTTGTATGTTGTGGTATCAGTTATTAATATACATGAAATTGTGTTGTCCAAAAATG
ACGTAGCAATTGGGAAACTGATTCTGTCCGGCTTCCAAATGACTGTAGCGTAGCCGTTCGCTCGTGTCAATCCCCTCCTC
TATCTATACGCCACTCCGTCACCGCCACCTGCTGCTGCAACCCCGCCTTGCAAGTCAGTCGGGGGCCTGCAGCCCACACG
TGTACAGAGCTGCGAGCGGGCAGAGTATAATGCCCAACAACACCGGTAGTGCTTCAGAAACATCTCCCCCATAAATAATA
CAGGCAACGAGAGCTCCATGAAGATTTGACAAGAAGATGGCCCTCATTGCTCGCTGAACCAGATCGAGCCTCGGCCTGCT
CGACTAGCTCAACTAGTGGATTGGCATTTTTGGCAACCTTAGCTTGGCCTGCTTCTTCCTCATGGAAAGGGAAGCAACGA
GTCTCAGCCTCCTCTTCTCTCGCGGTCGCGGTCGCCGTCGCCGGCGTCCCAAGTCCAAGTCACACGCGCACCCCGCACGC
GGATGGATTGCTACGTCTAGTATATATAGAGATATGGATGGTTTGGACTTGGGAGTTGGAACAAGGATGGGGTCGTCCAT
GGCTAGAGGGAAGGTCGTGCCGCGGATCGGTGAGGTGGCGCAAGGCAAGGAAGGCCAATGCCATGGATCAGTGAGGTGGC
GCAGGTGCAGGGCTGAGGTGGCGCAAGAGATTATTACTTGGCTTTCCAATGGTCTGTATTTATTTATTTTAGCAAACTAT
AACTTTTTCCATGCCAGTGGAGCTATTCAGTTCCGCTTTCTTTGAAAATCAACGGCTCTAGAGTTTGTAATTTATTTATC
TAGGTTCAAGCGAGGGATC
>chr4A_12
-----------TAAAAAAATGTGTTCTGAGGTCTTTGGTTCAGTTACAAAACAACATCACAACAGTTATTTCTAAAGTTA
TTTTCTCTCATACTTAATATTA--GAGTTTTAACTGTTGAGTTTTCCAACTGTCCCAAGAATAAATTCCATGAAAATTCT
GCA-----TTTTTTGCCAAAGATAGCAATGAGCCACCACACAACAGTTACATAAACTGATACAAGAGCACATCTTGCCAA
TTTTCTCAACTGCTATGCACGGCTTTAAACAGAAGCTCCGTCAAACAAATGTATAAACGAAGATGAAACATGCCATCCCA
TACAGTCTACAGCAGAGTAAGACTGCACTTGAAAAGCAGGCGAAAAGTAGGCGTTCAAAGCCAGAACAGGAAATCTTACA
GTATTTTTGTACACTACATCTGGTAGATATCCAGTTATTTCATAGAGTTATACCCAGTCTTAGCTTTTCCAGGTTTCCAG
TACACCAC---CATAGATAAACTGTACACTTATAACAGAAAGCATTGGAATGGTTACTTTAATCAGATTACATAA-----
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>chr3D_12
TAAAA------------AATGTGTTCTGAGGTCTTTGGTTCAGTT-CAAAACAACATCACAACAGTTATTTCTAAAATAA
TTTTCTCTCATACTTAATATTACAGAGTTATAACTGTTGAGTTTTCCAATTGTCCCAAGAATAAATTCCATGAAAATTCT
GCA-----TTTTGTGCCAAAGATAGCAATGAGCCACCACACAACAGTTACATAAACTGATACAAGAGCACATCTTGCCAA
TTTTCTCAAGTGCTATGCATGGCTTAAAACAGAAGCTCGGTCAAACAAATGTATAAATGAAGATGGCACGTGCCATCCCA
TACAGTCTGCAGCAGAGTAAGACTGCACTTGAAAAGCAGACGAAAAGTAGGCGTTGAAAGCCAGAACAGGAAATCTTAAA
ATATTTTTGCACACTACATCTGGTAGATATCCAGTTATTTCATAGAGCTATACCCAGTCTTAGATTTTCCAGGTTTCCAG
TACACCAC---CATAGATAAATTGTACACTTATAACAG-AAGCATTGGAATGGTTACTTCAATCAGATTACATAA-----
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-------------------
>SNPs
SSSSSSSSSSS----S---------------------------------------------------------------S
-----S---S-----------------------------S-S-------------S--------S-----SS----SS-S
-SSSSSSS----------------------------------------------S--------------S-----S----
---------------------------------------S---------------S------------------------
----SS------------------------------SS----------------------------S-S-S---------
-------SS--SS----S------S-------------------------S---S----------------S--------
----S---SSS--------------------------S-------------S-----------------------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_853
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---------------------------------ACATCTTGGCTGCAGTCACA---------------------------
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>reverse_2079
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------------------------------------------------------------------------------AT
GGCTAGAGGGAAGGTCGT--------------------------------------------------------------
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-------------------
