>input_sequence_83484
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------------ATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGCAGATCGGGCCGGAACTACTACTA
CGGCGACGCGTC------CGGGGCCAGCACCAGCGCCGGCACCAGCGGGGGGCTGAGCCGGAGCTACTCGGCCAGCGTCA
CCGCCACCCGGGACG---GCGCCGGCGCCAGCGGGAG------CGGGGGCGGGAGCTCGTCGTCGGAGCAGCAGAAGAAG
GAGGAGGCCGACTCCCGGCGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTCAAGGAGCACCGCGCGCGCTTCTACATCGT
CCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAG-------------------------------------
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>chr3A_1_TraesCS3A01G527200
GTAAAAACGCGAGAGTTACTGACAGCGGCATCCACTGGCCACCGCCAGGAGAAAATTGAAATATTCAAAAGGTTGGCTTG
CCGACCGACGGGACGGACGCCGTGCAACGGCTAACATGGGGTGATTTGATTTGACGGTGGCGGGCGGGGCGGGGCGGGGC
GGGGCGGGCGTGGCCGGCAGCTTTGCGCGCGATCATGTGGCGTGATGCAGAGGTTATGCACAGTGATCGCAGTAAGTCTG
GCGCCACTCCTACC-----------------------------ACCTTTAAATTTTATTTGTACTGCGTGTGGTAGTAGT
AGTGGTAGTACGCTACCACTATA--CTCCAGCAGTTGCTGCGTGCGTGGTTGTGCGTGCAGTGAAGTCGGGAGGAGACAG
TGT-AGTGTAGGTACCAACAGAATTTTTAGAGCCGCGTAGCATAGGCT----------------TCTGCGGCGGCTTTTC
TTCCATCTCGAGATGG-------CAGGGCGGGTGGATCCGACGGGCCACAGGATTCCGCTT---CCGCCACCACCGTTGA
TCGATCGGTCGGTCGGTCA---CAGACGGAATGTACTCTGCTGCTGGGAGCGCTGCGCTTGCGTTTTCATGGCGGTAGAG
GCCAAGCACAGTGAGTG----------------TGAGAGTGAGAGTGGTGCGGTGGT--------AGCTGGTGCCTGGCT
GGGAGGGACGAGTTGTCTTCCATCCGTCGAAAGGTTGGGGTT------------GGGGTCGGGTTTCATTTGTTTG----
-GGAGCGAGGCGAGGAGAAGCCAGCTGAGCTGAGGAGG---GGG--AGGAGACAGGGCGGCCCCATTCCCACTCGCTCCC
ACTCCCTCACTCCCTGCTCCGCTCTGCAGCTAGCACACCATTCATTGATTCACTCGCTCGCCCGCCCGCTCGCTCGCTCC
ATTTCTTCTTCTATCC-------------CTCGCTCTGCTCATTCCACGCGCACTGTCCACTCCATCCGT--CCATCCCC
ATCCATCTCCACCGCCACCGACCCACCTGCATTTACGTTTCAGTCGCCGGCGGCGGCGGCAGGGCTGATCTGGGTTGGAA
----------GCATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGCAGATCGGGCCGGAACTACTACTA
CGGCGACGCGTC------CGGGGCCAGCACCAGCGCCGGCACCAGCGGGGGGCTGAGCCGGAGCTACTCGGCCAGCGTCA
CCGCCACCCGGGACG---GCGCCGGCGCCAGCGGGAG------CGGGGGCGGGAGCTCGTCGTCGGAGCAGCAGAAGAAG
GAGGAGGCCGACTCCCGGCGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTCAAGGAGCACCGCGCGCGCTTCTACATCGT
CCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAGGACCTGCCGGCCACCTCCGGCAGGCCGGCCGCCACAT
TCTTTCAACCGTTTGCTTCTGCTCTTCTA---CCGCTGCTGTAGCTACGTACAT-------TTCCTTCCCCCTTTCTTGG
CTGGCCTAGCCGAGCTCTCCATCCAT---TCTCAGCCTATATAATCTTCTTAGCTTCTTCTTCTTCTTC-----------
-------------------TTGCTGCTTGCTTAATTACTTTCTTGATGTTTTT-CCCCACTGTGATTTGGGC-ATGTACA
GTACATCAGCCATGAGCGCCACCACCAGCACCAAGGTAAT------CCACCTAGCTAGCAGTCCCGTCA----CAATCAG
CCACCATTACTAGCTAGCTAGCTCAGGAGCTCC----------------ATTTCGCTCTGTT-TTTCCTAGTACCACG--
-GAGACTTAAATTTGTGCAGCTAGCTTCATTTCAATC--AAATTTGTCCTAGCACCAG-CTGATGTTTTGATTTCGAGTG
AGGGAGGCCGTTGAAGCA-------------AAGCAAGATTGATCCATGTCGTTCCATTCTTTCACCTTTGC---GTTGA
TTAATTGCTGATCCTTGTACCG-GTACCAACAGTTT----GTTGTTTGCGGTTGAAATCCGGTTGGC-------------
---GGAGGGCGGTCAATTGACCGGACGGACGAGGCTCACGCACGCGCGCACGCAGAGAT---TGAATCAATCA------G
GAGCTCAGGGGCTCGCTCGTCGGCCGGCGGGCCAATGATTGTGCTAGTCTTATTAGTGGAC-GCCGGTCG-TCGATCTGC
TGGG--------TGGTGATGATGATGGGGAGAGTACAATTAGGTGGGGGATGGGAC-GCAACGC----------------
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----------------------------AAGTGAGTGAGAGTGAGTGAGAGGGAGCTTGTCAATTTGTTGGTGGGATTCA
GGCATGGCATGGCGATAATGTTAGCTAGCATGGTCCCCTCGCTCATGCTCGCCCG----ATTCAGTCAAGCCAATCAGTA
GACCAAATGTTCGCTTAATCTAGCAGCTGGGCCTCACCCGTCGCCATCGCCGTCGCCATCGCCATCGCCGTCGCCGTCGC
CGTCGCCGTCCGTCGTCGGCCATGCA
>chr3D_46
---------------------------------------------CAGGAGAAAAATATAT--TTCAAAAGGGTCA----
CCGACCGACGGGACGGACGCCGTGCAACGGCTAACATGGGC-----TGATTTGACAGTGGCGAGCG--------------
------GGCGTGGCCGGCAGCTTTGCGCGCGATCATGTGGCGTGATTCAGAGGTTACGCACAGTGATCGCAGTAAATCGG
AGGCTGGCTGGCCGTGAGCGAGGGTACTACTACACCACTTGTAACTTTAATTTTATGTTTGTACTGCGTGTAGTACCGGG
GCTG---GTACGCTACACTATACTCCTCCACCAGCTGCTGCGTGCGTGGTTGTGCGTGAAACGAAGTGAAATTGGGGAGG
CGACAGTGTAGGTACCAACAGAATTTTTAGAGCCGCGTAGGCTTCTGCGTCTGCGTCTGCACCATCTGCGGCGGCTTTTC
TACCATCTCGAGATGGTC---GGCGCGGCAGGTGGATCCGACGGGCCACAAGATTCCACTTGCACCACCACCACCATTGG
TCGATCGATCGGTCGGTCA---CATACGGAATGTACTCTGCTACTTGGAGTGGTGCGTCTGCGTTTTCATGGCGGTAGCG
GCCAAGCACAGTGAGTGAGTGAGTGAGAGTGAGTGAGCGAGTGAGTGGTGCGGTGGTACGTAGCTAGCTGGTGCCTGGTT
-----GGAGGAGTTGTCTTCCATCCGTCGAAGGGTTGGGGTCGGCGTTGGGGTCGGGGTCGGGTTTCATTTGTTTCGGAG
CGGAGCGAGGCGAGGAGAAGCCAGCTGAGCTGAGCTGAGGAGGG--AGGAGACAGGGCGGCCCCATTCCCACTCCCTCCC
ACTCCCTCACTCCCTGCTCTGCTCTGCAGCTAGCACACCATTCATTGATTCACTCGC--------CCGCTCGCTCGCTCC
ATTGCTTCTTCTATCTATCCCTTGCTCTGCTCGCTCTGCTCATTCCACGCGCACTGTCCACTCCATCCATCCCCATCCCC
ATCCAT--------CCACCGATCCGCCTGCATTTACTCCC--GTCTCCGGCGGCGGCGGCAGAGCTGAGCTGATCTAGGT
TGGGGGCGGGGCATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGCAGATCGGGCCGGAACTACTACTA
CGGCGACGCGTCCGGGTCCGGGGCCAGCACCAGCGG---GGGC---------CTGAGCCGGAGCTACTCGGCCAGCGTCA
CCGCCACCCGGGACGGCAGCGCCGGGGCCAGCGGGAGCGGGAGCGGGGGCGGGAGCTCGTCGTCGGAGCAGCAGAAGAAG
GAGGAGGCCGAGTCCCGGCGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTCAAGGAGCACCGCGCGCGCTTCTACATCGT
CCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAGCTCCGGCCGGGAGCTGC--------------CCACAT
TCTTTCAATCGTTTGCCTCTGCTCTTGCACTGCTGCTGCTGTAGCCACGTACCGGCGTACATTTCTTCCCC-TTTCTC--
--GGCCTAGCCGAGCTCTCCATCCATCCGTCTCAGCCTATATAATCTTAGCCGCTTCCTCTTCTTCTTCTTGCTAC----
---------------------------TGCTTAATTTTGCTGTTGATGTTTTT-CCCCACCGCGATTTGGGTTATGTACA
GTACATCAGCCATGAGCACCACCACAAGG--CAAGGTAAT------CTAGCTAGCTAGCAGTCCCGTCACAATCAATCAG
CCACCATTACTAGCTAGCTAGCTCAGGAGCTCTGCTCTCTTCTTTGTTTATCTCCTCCTCCT-TTTCCTAGTACTACTCA
TAAGACTTAAATTTGTGCAGCTAGCTTCATTTCAATTTGATG------------------------TTTGATTCTGAGTG
AGTGAGGGAGGTCGTTCGTTGAAGAACAAACATGCAAGATCAATCCATGTCGTT---TTCCTTCATCTTTCC---GTTGA
TTAATTGCTGGTCCTTGTACGTAGTACCAATAATTT----GTTGTTTGCGGTTCAAATCCGGTTGGCGGA----------
--GGGAGGGCGGTCAATTGACCGGAT----GAGGCTCACGCATGCACGCACGCAGAGAT---TGAATCGATCAGGCTCAG
GAGTTAAGGGGCTCGT--------CGGCCGGCCAATCATTGTGTTAGTCTTAGTGGACGCCGGCCGGTCAATCGATCTGC
TGCTGATGATGATGATGATGATGATGGGG-GAGTACAATTAGGTGGGGGATGCAAATGCAACAC----------------
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----------------------------AAGTGATGC----------------AGCTTGTCAATTTGTTGGTGGGATTCA
GGCATGGCATGGCGATAATGTTAGCCAGCATGGTCCCCTCGCTCATGCTCGCCCTCCCTATTCAGTCAAGCCAATCAGTA
GACCAAATGTTGGCTTGCTTAATCTCGCAGC-------------------------------------------------
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>chr3B_417
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----------------------------------------------------------------TCTGCGGCGGCTTTTC
TTCCGTCTCGAGATGGTTCAGGGCAGGGCAGGTGGATCCGACGGGCCACGGGGTTCCACTT---CCACCGCCACCATCGA
TCGATCCATCGGTCACAGACGCCAGACGGAATGTACTCTGCGT---------------TTGCGTTTTCATGGCGGTAGCG
GCCAAGCACAGTGAGTGAG----TGAGAGTGAGCTGAGCTG------------------------AGCTGGTGCCTGGTT
-----GGAGGAGTTGTCTTCCATCCGTCGAAGGGTTGGGGTC------------GGGTTGGG------TTTGTTTG----
-GGAGCGAGGCGAGGCGAAGCCAGCTGAGCTGAGCTGAGGAGGGGGAGGAGACAGGGCGGCCCCATTCCCACTCCCTCCC
ACTCCCTCACTCCCTGCTCTGCTCTGCAGCTAGCACACCATTCATTGATTCACTCGC--------C--------CGCTCC
ATTTCTTCTTCTATC-------------GCTCGCTCTGCTCATTCCACGCGCACTGTCCACTCCATCCATCCGTC-----
-----T--------CCACCGACCCGCCTGCATTTACGTCTAAGTCGCCGGCGGCGGCGGCAGGGCTGATCTAGGTTGGAA
----------GCATGGAGGGGGACGACAAGTGGAAGCTGTCCAAGAAGGGGCGGAGCAGATCGGGCCGGAACTACTACTA
CGGCGACGCGTCCGGGTCCGGGGCCAGCACCAGCGGCGGGGGC---------CTGAGCCGGAGCTACTCGGCCAGCGTCA
CCGCCACCCGGGACGGCAGCGCCGGCGCCAGCGGAAG------CG------GGAGCTCGTCGTCGGAGCAGCAGAAGAAG
GAGGAGGCCGAGTCAAGGAGGCGGCTGTCCAAGAAGTGCGTGGAGGCGGTGAAGGAGCACCGCGCGCGCTTCTACATCGT
CCGCCGCTGCGTCTCCATGCTCGTCTGCTGGCGCGACTACTAGGACCTGCCGGCCACCTCCGGCAGGCCGGCCGCCACAT
TCTTTCAATCGTTTGCTTCTTCT-TTCCA---CTGCTGCTGTAGCTACGTACCGGCGTACATTTCTTCCCCCTTTCTC--
--CGCCTAGCCGAGCTCTCCATCCATCC----CAGCCTACATAATCTTAGCCGCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTGTTGTTGCTGCTTGCTTAATTACTTTCTTGATGTTTTTTCCCCACTGCGAATTGGGTG-TGTACA
GTACATCAGCCATGAGCGCCACCACCACCACCACAAGGTAATCTAGCTAGCTAGCTAGCAGTCCCGTCA----GAGTCAG
CCACCATTACTAGCTAGCTAGCTCGGGAGCTCC----------------ATTTTGCTCTGTTGTTTCCTAGTACTCCTTC
CGAGACTTAAATTTGTGCAGCTAGCTTCATTTCAATTATAAATCTGTCCTAGTTCCTACCTGGTGCTTTGATTTTGAGTG
AGTGAGTGAGGCCCCTTGATGAAGAACAAACATGCAAGATCAATCGATGCTGTT---TCATTTCGTCTTTACACTGTCTA
CTAATTGGTGGTCCTTGTTACAAGTACTATCAATTATCTCGTTGCTTGCGATCCAAATTGTTGAGCTAACTAGCTGGCTC
GCGGGCGGGCGGTCAATTGACCGGAT----GAGGCTCACGCACGCACGCACGCAGAGATTGATGAATCAATGA------G
GAGCTCAGGGGCTCGCTCGTCGGCCGGC----CAATGATTGTGTTAGTCTTAGTGGACGCCGGCCGGTCG-TCGATCTGA
TGATGATGATGATGGTGGTGGTGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGAGTGAGT--------GAGGGAGCTTGTCAATTTGTTGGTGGGATTCA
GGCATGGC-----GATAATGTTAGCTAGCATGGTCCCCTCGCTCATGCTCGCCCG----ATTCAGTCAAGCCAATCAGTA
GACCAAATGTTCGCTTAATCTCCCAGCTGGGCCTGAC------------------------------------------C
CGTCGCCGTCCGCCGTCGGCCAT---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-SS-SSS---------S-SSSSSS
----------------------------------------SSSSSS---------S------S---SSSSSSSSSSSSSS
SSSSSS----------------------------------------S---------S------------------S--S-
SS--SSSSSSSS-S-------------------------------S--S-SS--S-S--------------S---SSS-S
SS--SSS---------SSSSSSS-------S---S-----------------------S-SS-----SSSSSS-S-SSS-
S-S-------------------------------------SS-SSSSS--------------------------------
-----------------------------S---------------------------S--------S--------S----
-------S----------------------------------S--S----S-S----S--------------------S-
-------------------------------------S---S------------------------------------S-
SSSSS---S----------------------S---------S--------------------------------------
----------------------------------SS-S------------------------------------S-----
-------------------S-------------------------------------SSSSSSSS---------------
---------------S----------------------------------------------------S-----------
------SSSSSSSS----------S-------------S-S---------------------------------------
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-----------------------------------S---SSS-SSSSSSSSS----------------------------
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-----------S--------------------------------------------------------------------
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--------S------------------S-----S------------------SS---------S-------------SSS
SS----------------------------------------------SSSS----------------------------
--------------------------------------------------------------S--------S--------
-----------------------------------------------S-S------------------------------
--------------------------------------------------------------------------S--S--
------------------------------------S------S--------SS--SS----S--S--------S-----
--S----SS-S-SSSS-S--------------S-------SS------------SSS--------S----S---------
----------S----------S----------S--------------------S--------------------------
-------------------------SSSSS---------------S----------------------------------
----------------------------S--------------S--------S-S-SS-S--------------------
--SS-------------------------S----------------------SS-S------S-----------------
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---------------------------------------SSSSSSSSS--------------------------------
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----------------------S-----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------------S----------SSS
>forward_33
-------------AGTTACTGACAGCGGCATCC-----------------------------------------------
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>reverse_2206
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---------------------------------------------GCGCACGCAGAGATTGAATC---------------
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