>input_sequence_83480
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------------------------------------------------------------ATGGGCGCCGACAAGGGGAG
GACCTCGGTGCAGTTCGACGACTTCCTGCCGTCGATGGCGAGGAAGCTCGGCGCGGAGGGGCTGATCCAGGAGCTCTGCA
AGGGGTTCCAGCTGCTCATGGACCCCAGGGCCGGCAGGATCACCTTCCAGAGCCTCAAGAGGAACGCGGCCAGGCTGGGG
CTCGGCGAGCTCCGGGACGACGAGCTCCAGGAGATGATGAGGGAGGGGGACATGGACGGGGACGGCGCCCTGGATCAGAC
AGAGTTCTGCGTTCTCATGGTCAGGCTCAGCCCTGAGCTCATGGAGCAAGAGTCGCATAGGATGTTTGAATGTTGA----
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>chr3A_1_TraesCS3A01G315400
GATTTAGCTGTGTTCTGTTGATCGTTGTTGTCTCTCTTTGTCTTCGGCTTAACAGTAGTCCAGGTTCGTCGAGAATGCTG
CTTTATGTGTCTCTGTGCTATTCTTCGAGTATGTGCTTCGGCCGTCTCAGGACT--------------------------
-----------------------------CGGGTCGGCTCGTTGCTAACAGTA--GTGTGGCAAAAGTGAGAACG---GA
GGACGTAGGCAAATTACAAAGTTAT-ATTCCCAAAAGAAGAAGCCCTCCCATGTCTACGGTACTTCCTGTCACCTACTAT
AGCTCCACCAAGAAGGAATCGGGTGAATAGTATCGGTGCTGCATCAAAACACACCGGAATCCGAAACCTAGGCCAGTAAA
ATTCTCTTTAATCATCATCGCAAAATCATCAAGTGTGATCACAACCAACGAGCGACGGCGTTAGCGCGTAGGACTCGAAC
ACACATCAACCGAACGGAAATTTCCCGCCAGTC-----ATTTAAGATGACCACGTCAAAATGCCGTCCAACACCTAAACA
AATTGGAAATAAATACGCCACCTTCCTCGAGATCACCTCAGTTTATAG-TAGT-TATGATCAGCCACACACATTGACCTG
ACTCTGCCAAAATTCTTAATGACCCATAAAGAAAACGTACTTG-------GGCACACAT-----CATCACATGAGACCCC
TGCAAGCAATCCGGCA---------CCGGAGAAGCAAGCCAAGCCTCCTTCCTTCCGTCGTACGACGTGCTGGCTACTTC
GCAGAAACCAACCGAAAACCGCCGGACGCAGCAACGTCCTAACAGATAGCTAAGCCAGCCACGACGCCTGCAATTGCCTT
GCCTGTACTTTGGTTGGCATCCATGGAGAGGCTGCTTCCTTCCCAGAACCTCATGGACTCCTTCCTCCCCCGTCACCACT
CGCCGCCCCCTTATTTAAGCGCCCACCCACCATTCTCCTCTCATTCTC------CATTTACCACTGTTGCATTGCAAACC
GGGCCGGCTGTCCCTGA-----TCCTCCGTTCTTCGCGGTCGACGTGGATCGGGCGCGGCATGGGCGCCGACAAGGGGAG
GACCTCGGTGCAGTTCGACGACTTCCTGCCGTCGATGGCGAGGAAGCTCGGCGCGGAGGGGCTGATCCAGGAGCTCTGCA
AGGGGTTCCAGCTGCTCATGGACCCCAGGGCCGGCAGGATCACCTTCCAGAGCCTCAAGAGGAACGCGGCCAGGCTGGGG
CTCGGCGAGCTCCGGGACGACGAGCTCCAGGAGATGATGAGGGAGGGGGACATGGACGGGGACGGCGCCCTGGATCAGAC
AGAGTTCTGCGTTCTCATGGTCAGGCTCAGCCCTGAGCTCATGGAGCAAGAGTCGCATAGGATGTTTGAATGTTGATGTA
ACTTGACTTTTGTTACTTGCATACAATAGAACATACTGATTGCCACTGATACAGAGATCCAATCCAGTGCTTGTGCACTC
CCTTCCTACTGAAACATGATACTAGTA---TGGCTGATCATGCTATTGAAATAACAACACACAATTTTTGGACAACACGC
TTATAAAACACAGATCACAGCACGCAAACGGTTGATTATATAACATGAAGTATCACAGGCCTATGTCCCGCTATCGACGA
AAACCAGACCTCTTATTAGGCAACGCATACGAGCATATGGTGCAAAAATGTGCAGTACAACAACTCTGTTGGTTCACTTG
GCAGGATCAACATACTGAAA-GACATCATCTCGTTTACTCCCTC--GAAATGTTGTATGCCCCATTGGACTTAGCTATGT
GGCATTTTCCTATCCCTTTATGAAAGGTCTACTGGAGTTCCACAGAGCTCACCGATCTCCTTCTCTAGAAGTCGCATGAG
ATTTACTCCAGTCCGCCTATAAATCCAACTGTCTGTTGCTGCATCCCAGTCAAATCTAGCAGGCCCACTGCAGACATGAT
ATAGACACCCCTTTCAGATAAGAATCAACATGTAACAGATCAAGATTGACGAGCTTATGGGTAATGGACAGTTAAATTTA
AACAAACACTTGGACATCTGAGCAGGATCTTTTAAGAATGGGATCTTTTGAAGAAATAAAGCGTTGGGGAAAATATAAAC
CCATTCTAGAAAGCATAA------AGCCCATATGGGATAAGTATCAAAATAATGCTGTAGAATGCAAATATACTCTTCTT
AAACTGAAAAGGTACTGATGCCAGTAAACTGTCCTAGGCAAGTATCAGCGTAACATAATAGCAAGCCCAACTTCAAAGTT
ATACAGCATGGCAAATAAGATAATAATATGCTTAAGTTCAGGTAGTATACACATCAAATGAGCAGCAAATAAGACAAGAC
AACCATACCTCACAGGTGAAGATAGCCAGATTTGTCTGTTTGGCGTTT
>chr3B_1
GATTTAGCTGTCTTCTGTTGATCGTTGTTGCATCTCTTTGTCTTCGGCTTAACAGTAGTCTC-GTTCCTCGAGAG---TG
CTTTGTGTGTCTCTGTACTATTCTTCCAGTATGTGCTTCAGTCGTTTCGGGACTCTGTATGTTTTTTTTAACCCATTTTC
TTCTGTCTATTGACGAATTCACATGAAGCCGGGTCGGCTCGTCGCTTACAGTATAGTGTGGTAAAAGTGAGAACG---GA
GGACGCAGGCAAATTGCAA-GTTATTCTTCCCGACAGAAGAAGCCCTCCCATGTCTACGATGCTTCCTGTCACCTACTAT
AGCTCCACCAAGTAATAATCAGGTTAATAGTATCGGTACTGCATCGAAACATACCGGAATCGGAAACCTAAGCCGGTAAA
ATTCTCCTTAATCTTCATCGC-AAATCATCAAGTGTGATCACAACTGACGAGCAACGGCGTTAGCGCGTAGGCCTCGAAC
ACATATCAACTGAACGGAAATTTCCTGCGAGTC-----ATTTAAGATGACCACGTCAAAATGCCGTCGAACAGCTAAACA
AATCGGAAATAAATACGCCACCTTCCTCGAGATCACCTCAGTTTATACTTAGT-TATGATCAGGCACGCACATTGACCTG
ACTCTGCCAAAAAATTTAATGACTCATAAAGAAAAAGTACTGCAAAAGGAGGCACACAT-----CATCACATGAGACCCC
TGCAAGCAATCCGGTACCGGAGAAGC--------------AAGCCTCCTTCCTTCCGTCGTACGACGTGCTGGCTACTTC
GCAGAAACCAACCGAAAACCGCCGGACGCAGCAACGCCCTAAGC-ATAGCTAAGCCAGCCACGACGCCTGCAATTA----
-CCTGTACTTTGGTTGGCATCCATGGAGAGGCTGCTTCCTTCCTAGAAGCTCATGGACTCCTTCCTCCCCCGTCACCACT
CGCCGCCCGCTTATTTAAGCACCCACCCACCATTCTCCTCTCATTCTCATTCTCCATTCACCACTGTTGCATTGCAAGCC
GG-CCGGCTGTCTCCTTGATCCTCCTCCGTTTTTCGCCGTCGACGTGGATCGGGTGCGGCATGGGCGCCGACAAGGGGAG
CACCTCGGTGCAGTTTGACGACTTCCTGCCGTCGATGGCGAGGAAGCTCGGCGCGGAGGGGCTGATCCAGGAGCTCTGCA
AGGGGTTCCAGCTGCTCATGGACCCCAGGGCCGGCAGGATCACCTTCCAGAGCCTCAAGAGGAACGCGGCCAGGCTGGGG
CTCGGCGAGCTCCAGGACGACGAGCTCCAGGAGATGATGAGGGAGGGGGACATGGACGGGGACGGCGCCCTGGATCAGAC
CGAGTTCTGCATTCTCATGGTCAGGCTGAGCCCTGAGCTCATGGAGCAAGAGTCGCATAGGATGTTTGAGTGTTGATGTA
ACTTGACTTTTGTTACTTGCATACAATAGAACATACTGATTGCCACTGATACAGAGATCCAATCCAGTGCTTGTGCACTC
CCTTCCTACTGAAACATAATACTAGC---CTGGCTGATCATGCTATTGAAATACCAACACACAATTTCTGGACAACACAC
TTATAGAAAACAGATCACAGCACGCAAACGGTTGATTATATAACATGAAGTATCACAGGCCTATGTCCCGCCATCGACGA
AAGCCAGACGACTTATTAGGCAACCCATTAGAACATTTCGTGCAAAAAAGTGCAGTACAACAACTCCTTTGGTTTACTTG
ACAGAATCAACATACTAAAAAGATGTCATCTCGTTTCCTTCGCCGAGAAATGTTGTCTGCCCCCTCAAACTTAGCTATGT
GGCATTTTCCTATCCCTTTATGAAAGGTCTACTGGAGTTCCACAGAGCTCACCGATCTCCTTCTCTAGAAGCCGCATGAG
ATTTACTCCAGTCCGCCTATAAACCCAACTGTCTGTTGCTGCATCCCAGTCAAACCTAGCAGGCCCACTGCAGACATGAT
ATAGACACCCCTTTCAGATAGGAATCAACAAGTAACAGACCAAGATTGAAGAGTTTATGGGTAATGCACAGTTAAATTTA
AACAAACACTTGGATATCTGAGCAGGATCTTTTAAGAGTGGGATCTTTTAA----------CGTTGGGGGAAATTTAAAG
CCATACTGAAAAGCACAAAGCCATAGCCCATATGGGATAAGTATCAAAATAATGTTGTAGATTGCAAATATACTCTTCTT
AAATTGAAAAGGTACTGATGCCAGTAAACTGTCCTAGACAAGTATCAGTGTAACATAATAGCAAGCCCAACTTCAAAGTT
ATACAGCATGGCAAATAAGATAATAATATGCTTAAGTTCAGGTAGTATACACATCAAATGAGCAGCAAATAAGATAAGAC
AGCCATACCTCACAGGCGAAGATAGCCAGATTTGCCTGTTTGGTGTTT
>chr3D_134
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-----------------------------------------------------T--------------------------
-----------------------------CGGGTCGGCTCGTCGCTTACAGTA--GTGTGGAAAGCGAGAACGGTTGAGA
GGACGTAGGCAAATTACAA-GTTAT-CTTCCCAAAAGAAGAGGCCCTCCCATGTCTACGATGCTTCCTGTCACCTACTAT
AGCTCCACCAAGAAATAATCAGGTGAATAGTATCGGTACTGCATCAAAACACACCGGAATCCGAAAACTAGGCCTGCAAA
ATTCTCTTTAATCCTCATCGC-AAACCATCAAGTGTGATCACAACTGACGAGCAACGGCGTTAGCGCGTAGGACTCGAAC
ACATATCAACTGAACGGAAATTTCCTGCGAGTCGAGTCATTTAAGATGACCACGTCAAAATGCCGTCCAGCAGCTACACA
AATCGGAAATAAATACGCCACCTTCCTCGAGATCACCTCAGTTTATACTAGTTATATGATCAGCCAGACACATTGACCTG
ACTCTGCCTATTTTCTTAATGACTCATAAAGAAAAAG------------AGGCACACATCATCACATCACATGAGACCCC
TGCAAGCAATCCGGCA---------C--------------AAGCCTCCTTCCTTCCGTCGTACGACGTGCTGGCTACTTC
GCAGAAACCAACCGAAAACCGCCGGGCGCAGCAACGTCCTAGAC-ATAGCTAAGCCAGCCACGACGCCTGCAATTA----
-CCTGTACTTTGGTTGGCATCCATGGAGAGGCTGCTTCCTTCCCAGAACCT-ATGGACTCCTTCCTCCCCCGTCACCAC-
------CCCCTTATTTAAGCACCCACCCACCATTCTCCTCTCATTCTC------CATTCACCACTGTTGCAAGCT-----
GGGCCGGGTGTTCTTGA-----TCCTTTGTTCTTCGCCGTCGACGAGGATCGGGCACAGCATGGGCGTCGACAGGGGGAG
CACCTCGGTGCAGTTTGACGACTTCCTGCCGTCGATGGCGAAGAAGCTCGGCGCAGAGGGGCTGATCCAGGAGCTCTGCA
AGGGGTTCCAGCTGCTCATGGACCCCAGGGCCGGCAGGATCACCTTCCAGAGCCTCAAGAGGAACGCTGCTAGGCTGGGG
CTCGGCGAGCTCCGGGACGACGAGCTCCAGGAGATGATGAGGGAGGGGGACATGGACGGGGACAGCGCCCTGGATCAGAC
CGAGTTCTGCATTCTCATGGTCAGGCTGAGCCCTGAGCTCATGGAGCAAGAGTCGCATAGGATGTTTGAATGTTGATGTA
ACTTGACTTTTGTTACTTGCATACAATAGAACATACTGATTGCCAGTGATACAGAGATCCAATCCATTGTTTGTGCACTC
CCT----ACTGAAACATAATAGTACTAGTCTGGCTGATCATGCTATTGAAATACCAACACACAATTTTTGGACAGCAGGC
TTATAAAAAACAGATCACAGCACGCAAACGGTTGATTATATAACATGAAGTATCACAGGCCTATGTCCCGCCATCGGCGA
AAGCCAGACGACTTATTAGGCAACCCATTAGAGCATTTCGTGCAAAAATGTGCAGTACAACAACTCCTTTGGTTTACTTG
ACAGAATCAACATACTAAAA-GATGCCATCTCGTTTACTTTGCCGAGAAATGTTGTCTGCCCCCTCAAACTTAGCTATGT
GGCATTTTCCTATCCCTTTATGAAAGGTCTACTGGAGTCCCACAGAGCTCACCGATCTCCTTCTCTAGAAGCCGCATGAG
ATTTACTCCAGTCCGCCTATAAACCCAACTGTCTGTTGCTGCATCCCAGTCAAACCTCGCAGGCCCACTGCAGACATGAT
ATAGACACCCCTTTCAGATAAGAATCAACACGTAACAGACCAAAGTTGAACAGCTTATGGGTAATGGGCAGTTCAATTTA
AACAAACACTTGGATATCTGAGCAGGATCTTTTAAGAGTGGGATCTTTTAAGGAAATCAAGCGTTGGGGAAAATTTAAAG
CCATGCTGAAAAGCACAAAGCCATAGCCCATATGGGATAAGTATCAAAATAATGCTGTAGAATGCAAATATACTCTTCTT
AAACTGAAAAGGTACCGATGCCAGTAAACTGTCCTAGACAAGTATCAGCGTAACATAATAGCAAGCACAACTTCAAAGTT
ATACAGCATGGCAAATAAGATAATAATATGCTTAAGTTCAAGTAGTATACACATCAAACGAGCAGCAAATAAGACAAGAC
AACCATACCTCACAGGTGAAGATAGCCAGATTTGTCTGTTTGGCGTTT
>SNPs
-----------S------------------SS----------------------------SSS----S------SSSS--
----S-----------S---------S------------S-S---S--S-------------------------------
------------------------------------------S---S--------------S------------------
-------------------S------S--------------------------------S-S------------------
--------------SS----S----------------S------------------------------------S-----
-------------S-------S-----------------------SS------S--------------------------
---S------S--------------S--S-------------------------------------------S-------
---S-------------------------------------------S--------------------------------
-----------------------S-----------S-----SS-------------------------------------
--------------------------SSSSSSSSSSSSSS----------------------------------------
------------------------------------------SSS------------------------------SSSSS
S-------------------------------------------------------------------------------
--------------------S-------------------------------------S------------------S--
-------------------------------------S------------------------------------------
S--------------S----------------------------------------------------------------
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S---------S----------------S----------------------------------------------------
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-----------------S-----------------------------------S--------------------------
--------S--------------------------------------------------------------S--------
--S------SS-------------S---SS------S-S---------------------------SS------S-----
S---S-----------S------SS--------------S-SS-------------S------S-SSS------------
-----------------------------------------------------------------------S--------
-----------------------S------------------------------S-------------------------
------------------------------S--------S---------S------------------------------
--------------S----------------------S-----------S-S-----S----------------S----S
----S--SS------S----------------------------------------------------------------
-------------------------------------S------------------------------------------
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>forward_78
----------------------------------------------------------TCCAGGTTCGTCGAGAATGC--
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>reverse_1747
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------------------------------------------------------------------TGTTGGTTCACTTG
GCAGGA--------------------------------------------------------------------------
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