>input_sequence_83479
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-------------------------------------------------------------ATGGCTTCCAAGATCGCCG
CCACGGCGGCCAAGGTGCCAGCGAAGGCGAAGGGGCAGTGCATCTGCTCGCCCACCGACCATCCTGGCTCCTTCCGGTGC
CGGCTCCACCGCGCCAGCGGTATGCCGAGGTCGGTCTCGTGCCAGCAGTTCGGTGACCCCCACACGGCGAGCTCCCCGAT
GCTCTGCTCCGCCCACATGCCGAGGTCGGCATCGCAGCAGCAGTTCACGCCTCCTTCCGGCTCCGGCATTTCGAGATCGG
CGTCCCAGCAGCAGCTCCCGCGCTCCGCCGGTGTGCCAAGATCGGTATCGTGGCAAGATTTTGCTCACAAGAACTGA---
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>chr2D_1_TraesCS2D01G357000
GCGCGGCCGAGACGGACGCCGGCGGCTACAACGGCAGCCCGGCCGCCCCGGTGCTGGTGGTGGAGCGCGTGGTGACGGTG
GAGTACCTTGAGCAGTCCATGTCGCGGGGCCTCCTCGGCAAGTTCCCCGACTCCTCCGCCTACGACTTCGACTACTGCCA
GAGCGGCATCTGGTCCCCGGTCAACAAGATCCCGAGCGAGTCGCCGGCCTCCGGCTCCAGAGACTTCCTCATCGCCAAGC
TGAAGCGCCGGGCGAGGGCCGGGAGCAGGCTCAAGGACGCTGCCGGCGGAGGCGGCAGCAGGTCGAGGTGGCGGCGCCGG
CGGCTGCGGCGGGACGGCTCTTTCCTCGACCTCCACGACACCG---GCAGGGCGAAGCTGGACTTGTCGCCGCCGCTGCC
ATCGCCTGCCCCCACCAAGGTAGCTCCCTGCACATGAACCCCTCAAAGCTTGAGCTCGCTCCCCGAATCTGCCATTAGCG
TTACGAGGTTTCTGTTGGCTTGGGTTCTTCAGGAGGGGTGGAGGAGGGTGCTCACGGCGGCCATCAGGAAGTTCAAGGCG
CGGCACCGCCGGTCCCGGCCGGCTCCCCTGCTCCAGATGATGCTTCCAATGCTCTG--------ATCCG----TCGACCG
ATCGATCGATCGCGCCCGCGACTTCCTTGTTCTTCTGTTTGATTATTGATCGATGAGTTCGAGCGTATTGTACAACAGAT
TAGATCGTCAGATCGATGGTTTGTAAGTTGTCTGTCAT-----GTAACTATCACCAGTTAAGTTTCTCCATTCAGTTTGC
GTCCTACTTCTCCGTCAGTTTGTTTCGGTTTGCAACCCATCTGACACGGTTTCTGATGGAATCGTAACGAACCTGAATTC
-GACTCAAAATCCACCCTGCAACTCCGTTATAAATTCACCGTGGGAATCGCAACTAAAACAAACGCGTCGTATCAACAAC
AGCCGACAGATTCGACCTTCCAAGTTCGGCCGGAACGCGAGAGAGACCCGGAGCTCTGAAGATGGCTTCCAAGATCGCCG
CCACGGCGGCCAAGGTGCCAGCGAAGGCGAAGGGGCAGTGCATCTGCTCGCCCACCGACCATCCTGGCTCCTTCCGGTGC
CGGCTCCACCGCGCCAGCGGTATGCCGAGGTCGGTCTCGTGCCAGCAGTTCGGTGACCCCCACACGGCGAGCTCCCCGAT
GCTCTGCTCCGCCCACATGCCGAGGTCGGCATCGCAGCAGCAGTTCACGCCTCCTTCCGGCTCCGGCATTTCGAGATCGG
CGTCCCAGCAGCAGCTCCCGCGCTCCGCCGGTGTGCCAAGATCGGTATCGTGGCAAGATTTTGCTCACAAGAACTGATCA
AACCTCCTGAACCAGGCTGTTCTTTTTCATAGCTT--AGTTCAGAAACTACCGATGTAACTCCGTTTTCTAAGATTTTTT
TTTCATTTTTTAAG------GATAGTTGTAACTAGCACTGTAATCTTACGACCACACAAT--------------------
------TTTAGAGACAATGGAATAAACTAATGCTGAGATACACAGGAAAAATCTCGTAGAAGAACCTGAACAACAGGATG
GTTCTTTTCTTTGCGGCTAACGGTGATGATTCCCGACAGAAATAACTACAAGCTCTCATCAAATACTCCACTACTGGAAA
ACTAGTGCTAGGAAGACTACATCTCATCTATCTCACCCTCTCCACCAAGAAAGACACTTAGCAATAGCAGCTGCCCCTAA
CAGTGTACTGCAGAGTTATCAATACACATCCACCATGCGCGCTTGCAAACGAATGAAGCTGTGATCCTTTTTCTGAAGAA
GAAACAAGGCCAGAATTAGTGTATATAAAACCTCTGGATTATTAGACTAAACAGCTTAATGTGGATTGTGGAGATTAGCT
TA--ATGTGGATTGTAGAGAATAGCTTAATGTGGAACTTCTAAACGAAGTAACCAAGCATCTATTTATAAGTGATGCCTA
GTGAAGTTGTGATTTGTCTCTACTTAACAAAGGTTACCGAAGAAATTATACGTTTACAGAATGGGTAGCATGGATAT---
----------TGGATCATATCATTTACTCCCGCGGCTGTGAATTTGTAGCAGTGTATTTGTACAAGAACATGAGTTTGTT
AATTGACAAACCTAGCGGTGCTGCATAATATGTTGAAAAAAGAT------------------------------------
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-------------------------------------------------------------------------------T
AACAAAGACTACTGGGCGATATTTCAACCATGAGACTATGA-------ACACTTGCCTGATCAATCATCATCATTTTACA
TTTTATTTGCGGGACTCCACCAGTATGTAAACTGGCTTTCCATCGAGCTTGTAGAAATCCTGCAGAATATACAAAATTGA
TAAATTTGAAAGGGCAGCTGGGCCATGCCTCTCTTGGAAATATGTGTT
>chr2B_1
GCGCGGCCGAGACGGACGCCGCCGGCGAGAACGGCAACCCCGCCGCCCCGGTGCTGGTGGTGGAGCGCGTGGTGACGGTG
GAGTACCTTGAGCAGTCCATGTCGCGGGGCCTCCTCGGCAAGTTCCCCGACTCCTCCGCCTACGACTTCGACTACTGCCA
GAGCGGCATCTGGTCCCCGGTCAACAAGATCCCCAGCGAGTCGCCGGCCTCCGGCTCCAGAGACTTCCTCATCGCCAAGC
TGAAGCGCCGGGCGCGGGCCGGGAGCAGGCTCAAGGACGCTGCCGGCGGAGGCGGCAGCAGGTCGAGGTGGCGGCGCCGG
CGGCTGCGGCGGGACGGCTCTTTCCTCGACCTCCACGAGACGGCGAGCAGGGCGAAGCTGGACTTATCGCCGCCGCTGCC
ATCGCCTGCCCCCACCAAGGTAGTTCCCTGCACATGAACCCCTCCAAGCTTAAGCTAGCTCTCCGAATCTGCCATTGG-G
TTACGAGGTTTCTGTTGGCTTGGGTTCTTCAGGAGGGGTGGAGGAGGGTGCTCACGGCGGCCATCAGGAAGTTCAAGGCG
CGGCACCGCCGGTCCCGGCCGGCTCCCCTGCTCCAGATGATGCTTCCAATGCTCTGAAGTCTGAATCCACCGACCGACCG
ATCGATCGATCGCGCCCGCGACTTCCTTGTTCTTCTGATTGATTATTGA----TGAGTTCGAGCGTATTGTACAACAGAT
TAGATCGTCAGATCGATTGTTTGTAAGTTGCCTGTCAT-----ATAACTATCACCAGTTAAGTTTCTCCATTCAGTTTGC
GTCCTACTTTTCCGTCAGTTAGTTTCGGTTTGCAACCCATCTGACACGGTTTCTGATGGAATCGTAACGAACCTGAATTC
-GACTCGAAATCCACCCTGCAATTCCGTTATAAATTCCCCGTGGGAATCGCAACTAAAACAAACGCGCCGGATCAGCAAC
AGCCGACAGATTCGACCTTCCAAGTTCGGCCAGAACGCGAGAGAGTCCCGGAGCTCTCAAGATGGCTTCCAAGATCGCCG
CCACGGCGGCGAAGGTGCCAGCGAAGACGAAGGGCCAGTGCATCTGCTCGCCCACCGACCACCCTGGCTCCTTCCGGTGC
CGGCTCCACCGCGCCAGCGGTATGCCCAGGTCGATCTCGTGCCAGCAGTTCGGTGACCCCCACACGGCGAGCTCGCCGCT
GGTCTCCTCCGGCCACATGCCAAGGTCGGCATCTCAGCAGCAGTTCACGGCTCCTTCCGGCTCCGGCATTTTGAGATCGG
CGTCCCAACAGCAGCTCCCGCGCTCCCTCGGTGTGCCAAGATCGGCATCGTGGCAAGATTCTGCTCACGAGAATTGAACA
AACCTCCTGAACCAGGATGTTCTTTTTTCATAGCTTAAGTTCAGAAACTACCGATGTAACT---TTTTTAAAGATTTTTT
TTTCTTTTTTTGAAGCGCTAGATAGTTGTAATTAGCACTTTAGTCTTACGACGACACAAT--------------------
------TTTAGAGACAATGGAATAAACTAATGCTGAGATACACAGGAAAAATCTGGTAGAAGAACCTGAACAACAGGATG
GTTCTTCTCTTTGCGGCTAACGGTGATGATTCCCGACAGAAATAACTACAAGCTCTCGTCAAATACTCCACTACTTGAAA
ACTAGTGCTAGGAAGACTACATCTCATCTATCTCACCCTCTCCACCA----CGACACTTAGCAATAGCAGCTGCCCCTGA
CAGTGTACTGCAGAGTTATCAATACACATCCACCATGCGCGCTTGCAAACGAATGAAGCTATGATCCTTTTTCTGAAGAA
GAAACAAGGCCAGAATTAGTG--TATAAAACCTCTGGATTATCAGACAAAACAGCCTAATGTGGATTGTGGAGATTAGC-
---------------------------------------------------------CATCTATTTATAAGTGATGCCTA
GTGAAGTTGTGATTTGTCTCTACTTAACAAAGGTTACCGAAGAAATTATACGTTTACAGAATGGATAGCATGGATAT---
----------TGGATCATATCATTTACTCCCGCGGCTGTGAATTTGTAGCAGTGTATTTGTACAAGAACATGAGTTTGTT
AATTGACAAACCTAGCCGTGTTGCATAATATATTGAAAAAACAT------------------------------------
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-------------------------------------------------------------------------------T
AACGAAAGCTACTGGGAGATATTTCAACCATGAGACTATGA-------ACACTTGCCTGATCAATCATCACCATCTTACT
TTTTATTTGCGGGACTCCACCAGTATGTAAACTGGCTTTCCATCGAGCTTGTAGAAATCCTGCAGAATATACAAAGTTAA
TAAATTTGAAAGGGTGGCTGGGCCATGCCTCTCTTGGAAATATGTGTT
>chr2A_1
GCGCAGCAGAGACAGACGCCGGCGGCGACAACGGCAACCCGGGCGCCGCGGTGCTGGTGGTGGAGCGCGTGGTGACGGTG
GAGTACCTGGAGCAGTCCATGTCGCGGGGCCTCCTCGGCAAGTTCCCCGACTCCTCCGCCTACGACTTCGACTACTGCCA
GAGCGGCATCTGGTCCCCGGTCAACAAGATCCCCAGCGAGTCGCCGGCCTCCGGCTCCAGAGACTTCCTCATCGCCAAGC
TGAAGCGCCGGGCGCGGGCCGGGAGCAGGCTCAAGGACGCTGCCGTCGGAGGCGGCAGCAGGTCGAGGTGGCGGCGCCGG
CGGCTGCGGCGGGACGGCTCTTTCCTCGACCTCCACGACACCG---GCAGGGCGAAGCTGGACTTATCGCCGCCGCTGCC
GTCGCCTGCCCCCACCAAGGTAGTTCCCTGCACATGAACCCCTCCAAGCTTAAGCTAGCTCCCCGAATCGGCC-TTGG-G
TTACGAGGTTTCTGTTGGCTTGGGTTGTTCAGGAGGGGTGGAGGAGGGTGCTCACGGCGGCCATCAGGAAGTTCAAGGCG
CGCCACCGCCGCTCCCGGCCGGCTCCCCTGCTCCAGATGATGCTGCCAATGCTCTGAAGTCTGAATCCG----CCGACCG
ATCGATCGATCGCGCCCGCGACTTC-TTGTTCTTCTCTTTGATTATTGG----TGAGTTCGAGCGTGTTGTACAACAGAT
TAGATGGTCAGATCGATGGTTTGTAAGTTGCCTGTCATGTACTGTAACTATCACCAGTTAAGTTTCTCCATTCAGTTTAC
GTCCTACTTTTCCGTCAGTTTGTTTCGGTTTGCAACCCATCTGACACGGTTCCTGATGGAATCGTAACGAACCTGAACTC
TGACACGAAATCCACCCTGCAATTCCGTTATAATCTCCCTGTGGGAATCGCAACAAAAACAAACGCGCCGGATCAACAAC
ACCCGACAAAATCGAC-TTTCAAGTTCGGCCCGAACCCA--AGAGTCCCGGAGCTCTGAAGATGGCTTCCAAGATCGCCG
CCACGGCGGCGAAGGTGCCAGCGAAGGCGAAGGGGCAGTGCATCTGCTCGCCCACCGACCATCCTGGCTCCTTCCGGTGC
CGCCTCCACCGCGCCAGCGGTATGC--AGGTCGGTCTCGTGCCAGCAGTTCGGCGACCCCCACACGGCGAGCTCCCCGCT
GCTCTGCTCCGGCCACATGCCGAGGTCGGCATCGCAGCAGCAGTTCACGACTCCTTCCGGCTCCGGCATTTTGAGATCGG
CGTCCCAGCAGCAGCTCCCGCGCACCGCAGGTGTGCCAAGATCGGCATCGTGGCAAGATTTTGCTCAGAAGAACTGATCA
AACCTCCTGAACCAGGCTGTTCTTTTTTCATAGCTTAAGTTCAGAAACTACCTATGTAACT---TTTTTTTAGAA-TTTT
TTCCCTTGTTTGAAGCGCTAGATAGTTGCAACTAGAGCTGCAATCTTAGGGCGATATAATTTTAGAGACAATAATGTTCA
AAAAAATTTAGAGACAATGGGATAAACTAATGCGGAGATACACAAAAAATTCTCATAAAAAGAACCTGAACAGCAGGATG
GTTCTTTTCTTTGCAGCTAACAGTGGTGATTCCCGACAGAAATAGCTACAAGCTCTCATCAAATACTCCACTACTGGAAA
ACTAGTGCTAGGAAGACTACATCTCATCTATCTCACCCTCTCCACCA----AGACACTTAGCAATAGCAGCTGCCCCTGA
CAGTGTACTGCAGAGTTATCAAGACACATCCACCATGCGCTCTTGCAAAGGAATGAAGCTGTGATCCTTTTTCTGAAGAA
GATAAAAGGCCAGAATTAGTACTCAG--AACCTCTGGATTATTAGACTAAACGGCACATGCTCTCCTGTTTCAGAAAAAG
GCGGATGTGGATTGTGGAGAATAGCTTAATGCGGAAGTTCTACACGAAGTAACTAAGCGTCTATCTATAATTGATGCCTA
GTGAGGTTGTCATCTGTCTTTACTTAAGAACGGTTACTCAAGAAATTACACATTTACAAAATGGATAGTGTCGATAGATA
GCATCACCCCTGGATAGTATCATTTACTCCTCAATTTGTAAT--------AGTGTATTTGTACAAGAACATGAGTTAGTT
AATTGAT-AACCTAGCCGTGTTGTATAATATGTTGAAAAAACATGAGTGAATTCCAGTTTTTACCCCTAAGTTTAACATT
CTTGATGCTAATTACCCCATTTAAGAGAATTTCATCCATTATACCCTATTTAACATAAGTGTTGCCACAAATTACCCTTT
TCTATTTTTTGTGAGTGTTCTGATTGGTGGGCCCCGATTACCAGGTCCACATGGCGTGCCACATCGTCGGTTTTTTCCTT
GGCGATTTTTCTACAGGCTGAACCGATTCACTTAAATGGGGTAATTTGTGGCAACACTTTTGTTAAATGGGGTATAATGG
ATGAAATTCTCTTAAATGGGGCAATTAGCGTCAAGGATGTTAAACTTAGGGGTAAAAACTGGAATTCACTCAAAAACATT
AACAAAAACTACTGGGGGATATTTCAACCATGAAACTATGAACACTTCACACTTGCCTGATCAATCATCATCATTTCACT
TTTT-------GGACTCCACCAGTATGTAAACTGGCTTTCCATCGAGCTTGTAGAAATCCTGCAGAATATATGAAGTTAA
TAAATTTGAAAAGGCAGCTGGGTCACGCCTCTCTTGGAAATATGTG--
>SNPs
--------------------------S---------S-------------------------------------------
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---------------------------------S----------------------------------------------
--------------S-----------------------------------------------------------------
-----------------------------------------------------------------S--------------
-----------------------S--------------------S------S----S-------------------S-S-
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-------------------------------------------------------------------------S------
-------------------------------------------------SSSS---------------------------
------------------------------S-------------------------------------------------
---------S----------------------------------------------------------------------
------S---------------S--------------S-----------------------------S--S---------
-------------------------------S-------------S----------------------------------
----------S---------------------------------------------------------------------
--------------------------S---------------------------------------------------S-
-----------S-------------------------------------S---------------------S--------
---------------------------------------------S----------------------------------
---------------------------SSSSSSS---------------------------SSS----S-----------
----S------S-S--------------------------------------S---------------------------
------------------------------------------------------S-------------------------
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-----------------------------------------------SSSS---------------------------S-
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---------------------SS--------------------------------S-----------------------S
SS-------------S---------------S----S-----S----------S--------------------------
----------------------------------------------------------------S---------------
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----------------S---S--------------------S--------------------------------------
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------S---------S--------------------------------------------------------------S
---------------------------------------------------------------------------S--S-
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>forward_477
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---------------------------------------------------------GCTCCCCGAATCTGCCATTA---
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>reverse_2640
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-------------------------------------------------------------------------------A
TTTTATTTGCGGGACTCCACC-----------------------------------------------------------
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