>input_sequence_83455
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------------------------------------------------------------ATGGCGCCATCCCCGGCCGC
CGCCGTGAAGACGACGAGAGCGACGTGCGTGCTGTTGATCCTGCTCCTGTTGGCCGACGGGCGGTCGAGGCCCGTGGCTG
GGCAGGCGCCACCGGCGCCCGAGGAGGCCGTGGCAATCGAGGCGGATGCCGACGGCCGTGGAAACGGCACCCGCGGCGGC
GGCAGGAGCGCCGGGACGCCGAAGGAGTTGAGCGCCATCGACTGCCAGGTCTGCGAGTCGACGTGTCGGGTCAAGTGCCT
CGTCAACAACCTCTTGCAGTGGGGCAGCTGCTACCAGCACTGCAAGGCCGACAACTGCAACGAGTGGTGTAGGTAG----
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>chr1A_1_TraesCS1A01G423500
ACTTCCAACTTCCATTATCAAATCAAGCCTTCAATCAACTTTAGCAGCTGGATAATCTTTTCCCACGGTTGACAAATTCT
GCAAATGATCAATGGAGCCATGAAGGGAAGGCTAATTTGTCCTCCATCAGAGTTTACAACAGCTTGATCCCAAACTCGGA
GGAGCACCCAATTTTCAAGATGATTTGGAAAAGTAAAAACAGACTGAGACACAAGATTTTCTTCTGGTTAGCTGCCCATG
AGAGAATAAACACTAGAGCCTTGCTTCAAAGGAAAGGAATGCACTTAGATAACCCTCATTGCCCAAACTGTAGGCAGAGT
GCTGAAGAGACAGTAATACACCTTCTGTGGGGCTGCACTTTTGCTCAGGACTGCTGGAATTCACTAATTCCTGGTAAGAA
AAGAGGCACATCACTTTATGAAGAATTTCTCCTTGCATCAGAACATCTACCCAAGAAATTTT-CCTCAGAAATTATAATT
CTTGGATGTTGGAAAATTTGGACCCAAAGAAATGGCAAAGTATTTAGAGGTCTGCAGCAGACACTTCGAAGTTGGAGATA
TTTCCT-TAAGCAGGATCTGAATCTGCTTCAACTCAAAATCAAGGAAAAGCATATTGGCAGTTTCAAGCTCTGGATCGGT
AATAATTTGTAACATGTTTGGTTCTTTACCTAGAGAAGGTGTAGGTTGATTTAT--TT-TTTCCCTTTGGCCTCCTGGAG
GCTTGTATTTGTGCTCATTATTT-GGCTAAATATAAC--ACCGTAGAACAATTGTTCTACGGTTTACAGGTCGAAAAAAT
CATGCCATGAAATGTGTGACTCAACCACCTTCCACCAACACAGGTCCGCGGCCGTTGCCATCACGCACAAAGCACCACGA
ATCACACGTAC--------AAATCCCCCGCGCACTACA----CCCTCACTTCGCGCGCGCCACCACACAACGTCGTCGTA
GTCAACATTACACATACCAGAAGTACGTACACACAAACCCTCACACTAGAAGACCGATCCATGGCGCCATCCCCGGCCGC
CGCCGTGAAGACGACGAGAGCGACGTGCGTGCTGTTGATCCTGCTCCTGTTGGCCGACGGGCGGTCGAGGCCCGTGGCTG
GGCAGGCGCCACCGGCGCCCGAGGAGGCCGTGGCAATCGAGGCGGATGCCGACGGCCGTGGAAACGGCACCCGCGGCGGC
GGCAGGAGCGCCGGGACGCCGAAGGAGTTGAGCGCCATCGACTGCCAGGTCTGCGAGTCGACGTGTCGGGTCAAGTGCCT
CGTCAACAACCTCTTGCAGTGGGGCAGCTGCTACCAGCACTGCAAGGCCGACAACTGCAACGAGTGGTGTAGGTAGCCGT
CCGTCGAGGTAACGCGCCGACGGATGCATGACACGCGCATGGATCCTCTA------CAAGAGGATGTCCGTTTTCTGCGA
TTCATGGTGTTGCTTTGAATGCAGCAAATCAGCTGCTCTATGTTTTCCTTTTTACATTCAACGAATTTGTATACTTTCCA
CACAAAAATCTATTTGTATATATAGTCATCTTCCATTTTGCTGAAGCCATTGAACTGTTCTCACCGTAATTCGGGTTGTT
GTCTTTTTCGGGAATATGTTCAATCTGTAAATCGGCAGTCCTGGATGTGTGATGCTTGCTCTGTAGA-------------
------------------------------------AGAATCAACTGTGTTGGCCAGGTTGAGCATCCTTGCTACGAAAC
AAGGGAACGTGTGACTCAGCTACCATGCACCGACGTGGCTCCGTGCGGCGGCCAAGCCACACTTTGAGCTGGCCCGGTAG
TCAACTGACTGCATAGCATTTTTGTTGTTGCA----------------ACAACAAGCAGAAATCGTACAAAAAGATCTTC
GAAATGCATACATCTGACTACACAACGATTTAGTTGACCACACATGATAGGCTTCCTGGCACGGTTACTCGGTCCACGGC
CATTGTCATCACGCAAAAACACCATGAGCCGCACATAAAAATCATCGTGCATGCCA------------CAGCGCGCTATG
ATACATCGTGAACGTTGCACGGACCACACACATACATGCATACAATCCCTCGCATCAAGCGACCAATCCATGGCGCCATG
CCTGGCCGCCGCCGAGATCATTAGAGCAACGTTAGTGCTGCTGCTTATGCTCCTGTTAGCCGATCTGCGGTGTGAAATAA
C-GGGGGCGACTCTTTTTCAGGAGAGTGAATTATTTTTTTCTAGCATCAACCGCCTCATTTTTCCTTGGTAACAAAAACT
AAAACTAAAATGAAAATGAAAATAGAAGCTAAGAAAGAATGCACTGACATTGGTATAATACAAAAAGAAGAAAGAACGTG
GAAAAAACATAAAACAAATAATGAAGAAAA--TTACACAAAA
>chr4B_1
ACTTCCAACTACCATTATGAAATCAAGCCTTTAATCAACTTCTGCAGCTGGATAATCTTTTCCCATGGTTGACAAATTCT
GCAAATGATCAATGGAGCCATGAAGGGAAGGCCAAATTCTCCTCCATCAGAGTCTACAACAGCTTGATCCCAATCTCAGA
GGAGCACCCAATTTTCAAGATGATTTGGAAAAGTAAAAATAGACTGAGACACAAGATTTTCTTCTGGTTAGCTGCGCATG
AGAGAATAAACACTAGAGCCTTGCTTCAAAGGAAAGGAATGCACCTAGATGACCCTCATTGCCCAAACTGTAGGCAGAGT
GCGGAAGAGACTGTAATGCATCTTCTGTGGGACTGCACTTTTGCTCAGGACTGTTGGAATTCACTAATTCCTGGAAAGAA
AAGAGGCACATAACTTCATGAAGAACTTCTCCTTGCATCAGAGCATCTACCCAAGAAATTTT-CCTCGGAAATTATAATT
CTTGGATGTTGGAACATTTGAACCCAAAGAAATGAAAAAGTTTTTAGAAGCCTGCAGCAAACACTTCGAGGCTGGAGATA
TTTCCT-TCAGCAGGATCTGAATCTGCTTCAATTCAAGATCAAAGAAAAGCATATTGACAGTTTCAAGCTCTGGATCAAT
AATAATCTGTAAAATGATTGGTTCTTTGCCTAGAGAAGGTGTAGGTTGACTTTT--TT-TCTCC--TTGGCCTCCTGGAG
GCTTGTACTTGTACTCTCTATTTTGGCTTAATATAAC--GCCGTAGAACGATTGTTCTACGGTTTACAGGTAAAAAAAA-
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>chr3B_1
ACTTCCAACTACCATTATCAACTCAAGCCTTTGATCAACTTCAGCAGCTGGAGAATCTTTTCCCATAGCTGACAAATTCT
TCAGATGATCAATGGAGCCATGAAGGGAAGGCAAATTTTTCCTCCATCAGACTCTACAATAGCTTGATACCAAACTCAGA
GGAGCATCCAATTTTCAAGATGATTTGGAAAAGTAAAAATAGTCGGAGACACAAGATTTTCTTCTGATTAGCTGCCCATG
AAAGAATAAACACCAGAGCCTTGCTACTAAGGAAAGGAATGCATCTAGATGATCCCCATTGCCCAAACTGTAGGTGGAGT
GCATAAGAGATTGTATTGCATCTTCTATGGGACTCCACTTTTGCTCAGGATTGCTGGAATTCACTAACTCCTGGAAGGAA
AAGAGGCACTTCTCATTATGAAGAACTTCTCCTTGCATCAGAGCATCTTCCCAAGAAATTCT-CCTCAAAAATTATAATC
CTTGGATGTTGGAACATTTGGACCCAAAGGAATGGAAAAGTTTTTAGAGGACTGCAGCAGACACATCGTGGCTGGAGATA
CTTCCT-TAAACAGGATCTGAATCTGCTTCAATTCAAGATCAAAGAAAAGCATATTGATAGTTTCAAGCTCTAGATCAGT
AATAAT--------------------------------------------------------------------------
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>chr3D_2
-CTTCCATCTGCCTTTAACAACTCAAGCCTTCAATCAAGTTCTTCAACTG--TAGCCTTATCCCACATTTGACAAGTTCT
GCAAATGATCAATGGAACCATGGGGGC-AGGCTAATTTCTCCTCCATCAAAATCTACAACAGTTTGATTACAAACACAGG
GGAGCACCCAATTTTCAAGTTGATCTGGAAAAGTAAAAGTAGACTGAGACACAAGATTTTCTTCTGGCTAGCTGCCCATG
AGAGAATAAACACTAGAGCCTTGCTTCAGAGGAAAGGAATGCATCTGGATGACCCTCATTGCCCAAACTGTAATCAGAAT
GCTGAAGAAACTGTCATGCACCTCATGTGGGATTGCACTTTTGCTCAAGATTGCTGGAATACACTATTTCCTGGAAAAAG
GAGAGGCACATCACTTTATGTGGAACTCATCCTTGCAACAGAACACCTCCCCAAAAAAATTT--CTCTGAAATTATCCTA
CTTGGATGCTAGAACATTTAGACTCAAAGGAATGGAAAGATCTTTAGAGGTCTTCAACAGACACCCCTAGGATGGAGATA
CTTCCT-TAACCAGGATCTGAATCCGCTTCAATTTAAGATCAAAGAAAAGCATATTCAGAGCTTCAAGCTTTGGATCAGT
AATAACTTGTAATATGATGGGTTCTTTTCCTAGAGAAGGTGTAGGTTGATTTTCCTTCCTCTCT--TTGGCCTTCTGGAG
GCTTGTAATTATACTTTCT-TTTTGGCTTAATATAATATACTGTAGAACGATTGTTCTACGATTTTCCGAGTCAAAAAAA
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>chr4B_3
--TTCCATCTTCCATTAACAACTCAAGCCTTTAATCAACTTCAACAGATGGATAGCCTTCTCCCACAATTGACAAAATCT
GCTAATGATCAATGGAATCATGGGCGGCAAGCTACTTTCTCCTCTATCAAAGTTTACAACAGTTTGATCATAAGCGCAGA
AGAGCACCCAATTTTCAAGTTGATCTGGAAAAGTAAAAATAGATTGAGACACAAGATTTTCTTCTGTCTAGCTGCCCATG
AGAGAATAAACACTAGAGCCTTGCTGCAGAGGAAAGGAATGCATCTAGATGACCCTCACTGCCCAAACTGCAATCAGAGT
GCTGAAGAAACTGTCATGCACCTTCTGTTGGACTGCACTTCCGCTCAAGATTGTTGGAATTCAGTACTACCTGGAAAGAA
AAGAGGCACATCACTTTATGAAGAACTTATGTTGGCATCAGAACACCTCCCCAAAAAAAATTTCCTCTGAAATTATAATT
CTTGGATGCTGAAATATTTGGAACCAAAGGAATGGTAAGATATTTAGAGGTTTGCAACAGACACTTCGAGGTTGTAGATT
TTTTCCATAAATAAGATCTAAATCTGATTCAATTTAAGATTAAAGAGAAGCATGTCCAGAGCTTTAAGCTTTGGATCAGT
AATAACATGTAACATGATAGGTTCTTTTCCTAGAGAAGGTGTACATTGATTTTTCTTT-TATCT--TTGGCCTCTTGGAG
GCTTGCAACAATACTTTCT-GTTTAGTTTAATATAATATACCATAGAACGATTGTTCTAGGGTTTTCGGGTAAAAAAA--
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>chr1B_790
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-----------------------------------------------------------------------------AAT
CATGCCATGAAACGTGTGACTCAACCACCTTCCACCAACAAAGGTCCACGGCCGTTGCCATCACGCACAAAGCACCAGGA
ATCACACGTAC--------AAATCCCCCGCGCACTACATGCACCCTCACTTCACGCGCGCCACCACACATCGTCGTCGTA
GTCGACATTACACAGACCACACGTACGTACACACAAACCCTCGCACGAACCAACCAATCCAT------------GGCCGC
CGCCGTGAAGACGACGAGAGCGACGTGCGTGCTGCTGATCCTGCTCCTGCTGGCCGACGGGCGGTCAAGGCCCGTGGCTG
GGCAGGCTCCACCGGGGCCCGAGGAGGCCGCGACAATCGAGGCGGATGCGGACGGCCGTGGCAACGGCACCCGCGGCGGC
AGCAGGAGCGACACGACGGCGAAGGTGTTGAGCACCATCGACTGCCAGGTCTGCGAGTCGACGTGCCGGGTCAAGTGCCT
CATCAACAACCTCTTGCAGTGGGGCAGCTGCTACCAGCACTGCAAGGCCGACAACTGCAACGAGTGGTGTAGGTAGCCCT
CCGTCGAGCTAGCGAGCCGGCGGATGCATGACACGCGCATGGATCCATGCATGGATCACGAGGACGTTCGTTTTTTGCGA
TTCAAGG-GTTGCTTTGAATACAACAAATCAGCTGTTCTATGTTTTCCTTTTTACATTCAACGAATCTATATACTTTCCA
TACGAAAATCCATTTGTATATGTACTCATCTTCCATTTTGCTGAAGTCATTGAGCTGTTCTCTCCGTAATTTGGATTGTT
GTCTTTTTCGGGAAGATGTACAAACCGTAAATCGGCAGTCCTGTATGTAGGATGCTTATACTTTGTAGAAGAATCAATTG
TCAGAGGCCGGGGATGATCCTCCTTTTTCTTCTTAGAGAATCAATTGTGTTGGCCTGGCTGCGCATCCTTGCTACGAAAC
AAGGGAACGTGTGACTCAACTACCATGCACCAACACAGCTCCGTGCGGCGGCCAAGCCACACTTA-AGCTGGGCCGGTAG
TCAATTGACTACATAGCTTTTTTGTTGTTGTTGTTGCAAAAACAGCATACAACAAGCAGAAATCATAAAAAAAGATCTTC
GAA-TGCATACATCTGACTACGCAAAGATTTAGTTAACCACACATGATAGGCTTCCTGGCACCGTTAGTCGGTCCACGGC
CATTGCCATCACGTAGAAACACCATGAGCCTCACATAAAAATCATCGTGCATGCCGCATGCTCGTTTTCAGCGCGCTACG
ACAGGTCATCAACGTTGCACGGACCACACACATACATGCATACAATCCCTCGCATGAATCGACCAATCTTTGGGGCCAC-
CCTGGCCGCCGCCGAGATCACTAGAGCAACGTTTGTGCTGCTGCTTGTGCTCCTGTCAGCCAACCTGCGGTGTGAAATAA
CGGGGGCCGACTATTTCTCACGAGACAGAATA---TTTTTCCAGCATCAACCGCCTCTTTTTTCCTTGGTAGCAAAAACT
AAAACAAAAATGAAAATGAAAGTAGAAGCTAAGAAAAAATGCATTGACATTGGTATAATACAAAAAGAAGAAAGAAAGT-
GAAAAAACGTAAAACAAATAATGAAGAAAAAATTACACAAAA
>chr1D_790
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-----------------------------------------------------------------------------AAT
CATGCCATGATACGTGTGACTCAACCACCTTCCACCAACACAGGTCCGCGGCCGTTGCCATCACGCACAAAGCACCAGGT
CCAGGAATCACAAGGTACAAAATCGCCCGCGCACTACA----CCCTCTCTTCGCGCGCGCCACCACACATCGTCGTCGTA
GTCACACTG-CACAGACCGGACGTACGTACACACAAACCCTCACACGAGAAGACCGATCCATGGCGCCATCCCCGGCCGC
CGCCGTGAATACGACGAGAGCGACGTGCGTGCTGTTGATCCTCCTCCTGTTGGCCGACGGGCGGTCGACGCCTGTGGCTG
GGCAGGCGCTACCTGCGCCTGAGGAGGCCGCCACGATCGAGGCGGATGCCGACGGCCGTGGCAATGGCACCCGCGGCGGC
AGCAGGAGCGCCGGGACGACGAAGGAGTTGAGCGCCATCGACTGCCAGGTCTGCGAGTCGACGTGTCGGGTCAAGTGCCT
CGTCAACAACCTCTTGCAGTGGGGCAGCTGCTACCAGCACTGCAAGGCCGACAACTGCAACGAGTGGTGTAGGTAGCCCT
CCGTCGAGCTAGCGAGCCGGCGGATTCATGACACGCACATGGATCCATGGATGTATCACGAGGATGTTCG-TTTTTGCGA
TTCAACTTGTTGCTTT----------------------------------------------------------------
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>SNPs
-----------------------------------------S--------------------------------------
--------------------------------------S--------------------------------------S--
---------------------------------------S----------------------------------------
--------------------------------------------S-----S-----------------------------
-----------S-----S-------------S------------------------------------------S-----
-------------------------S------------------------------------------------------
--------------S--------------------S---------------------------------S----------
--------------------------------S----S-----S-------------S-------------------S--
----------------S----------S------------------------S-------S---SS--------------
-------S----S---SS----------S--------------------S---------------------SS-------
------------S----------------------------------------------------------------S--
---------------------------------------------------------------------S----------
--------------S------S------------------------S---------------------------------
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------------------------------S-S----------------------------S------------------
S-----------------S-------------------------------------------------------------
------------------------------------------------------------------------------S-
--------S--S--S----S--------------------------SSSS--------S--------S------S-----
----S---------------S--S-----------S------------------------------S-S-----------
S--S------S----------S--S---------------------S------S--------S--------S--S-----
--------------S----S---S-S-----------------S----SS-------SSS--S-SS--------------
--------------------------------------------S----------S--S--S------------------
------------------S------------S--SSS---------------------------SS------S-------
----S-----S------S------------SS--------------------------------S--S------------
---S-----------------S---S---------S--------------------------S----S------------
-----S-------S-S--------------S------------------------S----------------------S-
-S-SS--S-S---------------------------------------------S--S---------SS---S----SS
--------------------S------------S------------S---------S----S-S----------------
------S-----S---S---S----SS----SSSS------S---------------S-------------S--------
-----S---------------S--------------S------S--------------------------------S--S
--------S---------------------------------
>forward_332
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------------------------------------------------------------------------GGCAGAGT
GCTGAAGAGACA--------------------------------------------------------------------
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>reverse_2014
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-------------CAAAAACACCATGAGCCGCA-----------------------------------------------
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