>input_sequence_83452
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ATGGCGCCGCCCGGGTCGCGCCGATGGGCGTACGTGCGGATCATGGCCGGCACCATCCTCGGCGGCGGCCTCGGCTTCTA
CGTCATGCACCGCATCGAGACCTCCTACAAGGTACGCCGACT----------------CCCGTCCCACCAACCTACCGCG
ATCTGTGGACCA-TTTGATCGAAGCCGCGGCGCTCACCCCCGCTTTTCTTTGTCGTGCGCCGCGCCCGCAGGTGAGGATG
GAGGAGAGGCTGCGGAGGTACGAGGCGCACACGCTCGCCAAGGAGAAGGAGGCGCAGCAGCTCCAGGACGAGGGGCGCCG
CGAGGACCAGGCGCAGGTCTTGCCGGACTCGTGA----------------------------------------------
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>chr7B_1_TraesCS7B01G302200
AGCCCTCTAATGATCATACACCAATCCAAACAAATAGTATAACTTGAATAAAGTGATCGCACATCTATAA-ACTACCAAA
GTGAACTCCAGGAGTGCCTGCCCAATCCCCATTTACCAGGAGGCAACACAGGTACGATTTCCACCAT-GGGAAACGAAAA
GTCGTCTCTGAGGCAGCAAAACATGGAACCGCTCAACTGATTCAAACGACGCGGATCGGACCAAGGATCCCCAATCCCTG
CTCGATCGAAGACCTGAGCACAACGCACCTCGACGCGCGCCGGATCGACCGTGGCGTACTCCCGCTGGAACACGTACACG
TGCCTGGCCCCCTCCGGCCCCGACGGGACCCGCTTCTCCGGCGTGGCCCTGAGCCGCTCGGACACGGCGCGCAGCCCGGG
GTTCCCCATGAGCGCCGCCACGAGCTCCCTCCCGCTGCTCCCCTGCAGGAACCGGGAGCCGATAGGATCGTCACAAAGAG
GAGAAAGAGAG-----CAAGCGTCCACGTATAACCGCATGAGCGTGCCGTACGCACCTCGGGGGAGGAGCAGGGGACGGG
CTCGCCGTCGACCAGGAGCATTATCGCCGTCGGAGTTGGTGGGGGCGAGTGACCGAGCGAAGCAGAGGTCGCGGAGCCGA
CCAAGGAAATGGCCGGCCACACCTC-----------------------TTTTTTTTATGTGCTGCCGTCCAGCTGCGACC
CTTACCCGTCCACGGAAGAGGCCCACGACGACCT---ATCATCGCGGATCCTGGTCCAGC---ACAAGTCCATGGGCCGG
AAGCAGCCGTCGTTTCAGCCCAACCATCAGCCGTCGCTACACAGTACACTTCCACTCCACCGCTTCCGCCGCATCCCAAG
TCGCCGTCCTTCCGATCCCC----CCTCCCCTCCTCTTTCTCTGCTCCGGACACCCCATCTCCGTCGAACCGGACGCCCC
ATCCACCTCTGGACGGCCCTCCACCTCTACGGGTGGCGGCGGCGTCGGCGTCGGCGTCGGCGTAGCAAGGTCAGTGAGAA
ATGGCGCCGCCCGGGTCGCGCCGATGGGCGTACGTGCGGATCATGGCCGGCACCATCCTCGGCGGCGGCCTCGGCTTCTA
CGTCATGCACCGCATCGAGACCTCCTACAAGGTACGCCGACT----------------CCCGTCCCACCAACCTACCGCG
ATCTGTGGACCA-TTTGATCGAAGCCGCGGCGCTCACCCCCGCTTTTCTTTGTCGTGCGCCGCGCCCGCAGGTGAGGATG
GAGGAGAGGCTGCGGAGGTACGAGGCGCACACGCTCGCCAAGGAGAAGGAGGCGCAGCAGCTCCAGGACGAGGGGCGCCG
CGAGGACCAGGCGCAGGTCTTGCCGGACTCGTGATTTCCTCTCAACTCTCATCCTCATGCTCAGGCTCGCCTTCCCGAGC
TGTTTGGTG---AGTACTACTTGTAGCTACCATGCCTCTTTGAGTAGATGTGTACTTGT---GTGGTATGAACTGCATCA
TAAATTTCGGAGCCTGATGCCAAAATTCAGAGCTGTTTATATTGCCTGTTAGT-------TCCTTGGGCTCTCCGGGTTT
AAGCTTTAGCACTCCAATTTGCCTGTGGTTACCTGATCCAGCCGAAAACCAAATGTAAAATGCGTTTATGCCTTTCGAGC
ATCCAGCTATGCCACTG-----GTATCATTGTTGTCGCAGCGAGCCCAGGGATTCAATTCTCTCGGTTTCAAGTTATGCA
ATGTGGAACAAGCCGTGGAGGCTCGTTAATAAGTTTGGCAACC---ACTAGTGTCGGCAATGCCATTACCAC--TGGAGG
ATTAGGCACCTAGCAAATCAACTAATTTGGTTATTGTTGGCAGTGCTGAAAGCTTTGGCAATTGGTATGATTGAGACATC
AATATTCTAGGGATATGTCAGGACCATTGGTAGGCTGAAGTTTAGGACCCTTTTAGATCCAGCAACACCTACACCAATAA
AGCCTTTCAGTCCCAAACAAGTTCTTGTAGGCTAGAGTTGAAACCCATAAGATCTCGAAACCTAGTCATGGTTCTGGCAA
GTGGATGGCTAACTTCCACGCTCCCCTGTCCGTGTCTAGTTCTTTGGTGACATTCCAGTCCTTCAGGCTTTATGGACTCC
TCCCATGTCAAGTTTGGTCTACTGTGGCTCTCTTGACATTATCAACACAGTTAATCTTTCGCTATGCACCGGTGCTTTTG
GAGGCCTGCATTGTGTATGCCCAAACCATCTCAACTTCTCTTCAATTGGTGCTATCCCAACTCGCACATATATAATCATT
CCGAACCTGATCCTTTCTTCTTTGGCCACATATCCATCTCAATATGCGCATCTTTGCTAAACCTAACTGTTAGACATGTC
GCCTTTTAGTTGGCCAA
>chr7A_1
AGCCCTCTGATGATCATACACCAATCCAAACAAATAGTATAACTTGAATAAAGTGATCGCACATCCATAA-ACTACCAAA
GTGAACTCCAAGAGTGCCTGCCCAATCCCCATTTACCAGGAGGCAACACAGGTACGATTTCCACCATTGGGAAACGAAAA
GTCGTCGCTGAGGCAGCAAAACACGGAACCGCGCAACTGATTCAAACGGCGCGGATCGGACCAAGGATCCCCAATCCCTG
CTCGATCGAAGACCTGAGCACAACGCACCTCGACGCGCGCCGGATCGACCGTGGCGTACTCCCGCTGGAACACGTACACG
TGCCTGGGCCCCTCCGGCCCCGACGGGACCCGCCTCTCCGGCGCGGCCCTGAGCCGCTCGGACGCGGCGCGCAGCCCGGG
GTTCCCCATGAGCGCCGCCACGAGCTCCCTCCCGCTGCTCCCCTGCAGGAATCGGGAGCCGATAGGGTCGTCACAAGGAG
GAGAAAGAGAGAGCAC---GCGTCCACGTGTAACCGCATGAGCGTGCCGTACGCACCTCGGGGGTGGAGCAGGGGACGGG
CTCGCCGTCGACGAGGAGCATTATCGCCGTCGGAGTTGGTGGGGGTGTGTGACCGAGCGAAGCAGAGGTCGCGGAGCCGA
CCAAGGAAATGGCCGGCCACTCCTTTTTTTTTTTGAGGGAATCCTGTTTTTTTTTTATGTGCTAGCATCCAGCTGC----
-TT-GCTGTCCACCAAAGCGGCCCACT-------ACGATCATCGCGGATCCTGGTCCAGA---ACAAGTCCATGGGCCGG
AAGCAGCCGTCGTTTGAGCCCAGCCATCAGCCGTCGCTACGCAGTACACTTCCAC-----CGCTTCCGCCGCATCCCAAG
TCGCCGTCCTCCCGATCCCCCTCCCCTCCCCTTCCCTTCCTCTGCTCTGGACACCCCATCTCCGTCGAGCCGGGCGCCCC
ATCCACCTCTACGTG------------------------------------CGGCGGCGGCGTAGCAAGGTCAGTGAGAA
ATGGCGCCGCCCGGGTCGCGCCGGTGGGCGTACGTGCGGATCATGGCCGGCACCATCCTCGGCGGCGGCCTCGGCTTCTA
CGTCATGCACCGCATCGAGACCTCCTACAAGGCACGCCGACCCCCGCCATACCCGTCCCCCGTCCAACCTACCTACCGCG
ATTTGCAAATCATTTTGGTCGAAGCCGCCGCGCTCACGTCCGCTCTT--------------------GCAGGTGAGGATG
GAGGAGAGGCTGCGGAGGTACGAGGCGCACTTGCTCGCCAAGGAGAAGGAGGCGCAGCAGCTCCAGGACGAGGGGCGCCG
CGAGGACCAGGCGCAGGTCTTGCCGGACTCGTGATTTC-------CTCTCATCCTGTTGTTCCGGCTCGCCTTCCCGAGC
TGTTAGGTGAGTAGTACTACTTGTAACTACCATGCCTCTTTGA-TAGATGTGTACTTGT---GTGGTATGAACTGCATCA
TAAATTTCGGAGCCTGATGCCAAAATTCAGAGCTGTTTGTATTGCCTGTTAGTACCTTGGTCTACA----GTCCGGATTT
AAGCTTTAGCACTCCAATTTGCCTGCGGTTATCTGATCCAGCCGAAAACCAAATGTAAATGTGCGCTATGCCTTGCTACC
ATCTAGCTATGTCAGATTGTCAGTATCATTGTTGTCGCAACCTGCCTAGTGCTTCAGTTCTTTGAGGTTC-AGGTATACA
ATGTGGAACAAGTCGCTGAGGCTCGTTA-TAAGTCTGGCTTAATCTACTAGTGTCGGCATTGCCATTACCACACTGGTGG
ATTAGGCACATAGAAAATCAACAAATTTGGTCATTTTTGGCAGTGCTGATAGCTCTGGCA--------------------
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>chr7D_3
--CCCTCTAATGATCATAAACCACTCCAAACAAATAGCATAATTTGAATAAAGTGATCACACATCTAAACTACTATCAAA
GTGAACTCCAGGAGTGCCTGCCCAATCCCCATTTACCAGGAGGCAACACAGGTACGATTTCCACCA-TGGGAAACGAAAA
GTCGTCGCTGAGGCAGCAAAACATGGAACCGCGCAACTGATTCAAACGGCGCGGATCG-ACCAAGGATCCCCAATCTCTG
CTCGATCGAAGACCTGAGCACAACGCACCTCGACGCGCGCCGGATCGACCGTGGCGTACTCCCGCTGGAACACGTACACG
TGCCTGGGCCCCTCCGGCCCCGACGGGACTGTCCTCTCCGGCGCGGCCCTGAGCCGCTCGGACGCGGCGCGCAGACCGGG
GTTCCCCATGAGCGCCGCCACGAGCTCCCTCCCGCTGCTCCCCTGCAGGAACCGGGAGCCGATAGGATCGTCACAACGTG
GAGAAAGTGAGAGAGGCAAGCGTCCACGTGTAACCGCATGAGCGTGCCGTACGCACCTCGGGGGAGGAGCAGGGGACGGG
CTCGCCGTCGACGAGGAGCATTATCGCCGTCGGAGTTGGTGGGGGTGTGTGACCGAGCGAAGCAGAGGTCGCGGAGCCGA
CCAAGGAAATGGCCGGCCACACCT----------------------TTTTTTTTCTATGTGCTGGCGTCCAGCTGC----
-TTAGCCGTCCACCGAAGCGGCCCACGACGACCCACGATCATCGCGGATCCTGGTCCAGCAGCACAGGTCCATGGGCCGG
AAGCAGCCGTCGTTTCAGCCCAGCCATCAGCCGTCGCTACGCAGTACACTTCCACTCCACCGCTTCCGGCGCATCCCAAG
TCGCCGTCCTCCCGATCCCC----CCTCCCCTCCCCTTCCTCTGCTCCGGACACCCCATCTCCGTCGAGCCGGACGCCCC
ATCCACCTCTACGGG------------------------------------CGGCGGCGGCGTAGCAAAGTCAGTGAGAA
ATGGCGCCGCCCGGGTCGCGGCGGTGGGCGTACGTGCGGATCATGGCCGGCACCATCCTCGGCGGCGGCCTCGGCTTCTA
CGTCATGCACCGCATCGAGACCTCCTACAAGGCACGCTGGTCCCCGCCGTTTCCGTCCCCCGTCTAACCTACCTACCGCG
ATTTGCAAATCATTTTGGTCGAAGCCGCCGCGCTCACGTCCGCTCTT--------------------GCAGGTGAGGATG
GAGGAGAGGCTGCGGAGGTACGAAGCGCACATGCTCGCCAAGGAGAAGGAGGCGCAGCAGCTGCAGGACGAGGGACGCCG
CGAGGACCAGGCGCAGGTCTTGCCGGACTCGTGATTTT-------CTCTCGTCCCCTTGCTCCGGCTCGCCTTCCCGAGC
TGTTAGGTGAGTA---CTACTGGTAGCTACCATGCCTATTTGA-TAGATGTGTACTTGTATGGTAGTATGAATTGCATGA
TAAATTCCGCAGATTGGTGCCAAAATTCAGAGCTGTTTGTATTGCCTGTTAGTACCTTGGTCCTTGGACTGTCCGGATTT
AAGCTTTAGCACTCCAATTTGCCTGTGGTTATCTGATCCAGCCGAAAACCAAATGTAAATGCGCGCTATGCCTTGCTACC
ATCTAGCTATGTCAGATTGTCAGTATCATTGTTGTCGCAACCTGCCTAGTGCTTCAGTTCTTTGAGGTTC-AGGTATACA
ATGTGGAACAAGTCGCTGAGGCTCGTTC-TAAGTTTGGCTTAATCTACTAGTGTCGGCATTGCCATTACCACACTGGTGG
ATTAGGCACATAGAAAATCAACAAATTTGGTCATTTTTGGCAGTGCTGATAGCTCTGGCAGTTGGCATG-----------
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>SNPs
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------S-------------------------S---------------S-------------------------------
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-------S-------------------------S---------S-------------------S----------------
----------------------------------------------------------------------------S---
-----------------------------S--------------------------------------------------
------------S--------------------------------S-S--------------------------------
------------------------S---------------------------------------S-----------SSSS
S---S--------S----S--------------S----------------------------------------------
----------------------S-----------------S---------------------------------------
----------S-----------------------S---S-----------------------------S-----------
----------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------------------
-----------------------S--------------------------------------------------------
--------------------------------S--------S-----------------------S---S----------
--S--SSS-S-------S----------S--------SS-----S--SSSSSSSSSSSSSSSSSSSS-------------
-------------------------------S------------------------------------------------
--------------------------------------SSSSSSS-----------S-----S-----------------
----S--------------------------------------S------------------------------------
--------------------------------------S----------------------------S--S-----S---
-------------------------------S---------------------------SSSSSSS--------S-S-S-
---S-------S--SSS----------------------S-SS---S--S-S----S----S-SS-S---S--S---S--
------------S--SS-----------S----------SSSS----------------S-----------------S--
---------S---S--------S--------S---S-------------S----S-----S----S---SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_193
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-------------CAGCAAAACATGGAACCGCT-----------------------------------------------
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>reverse_1208
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-------GACCATTTGATCGAAGCCGC-----------------------------------------------------
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>forward_1162
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----------------------TCCTACAAGGTACGCCGACT--------------------------------------
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>reverse_2083
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--GGATGGCTAACTTCCACGCT----------------------------------------------------------
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