>input_sequence_83409
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ATGGCGCGCGTGTCCCTGATGATGCTCGCCGCC
GTGGTGCTCGCGTGCGCGCTGCTCGCCACCAGGCATGCGGACGCCGCCGGGGCCGGGGCCG-------------------
--GCGCGGCGGCCCCCGCCCCCGGCGGCTTCGCGTGCAACCCGCTCAAGGACAAGACGTGCAAGCTGGGGGAACCCAAGG
CGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGACGTCGGTCCCCATCCCGGGCGGCGGC
AAGGTCGACCGCGACGGCGATGGAGACACCGACGAGGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGG
CCACTGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr6B_1_TraesCS6B01G200900
CAAGAGGTTAGGCCTCATGAATCTCCTCTTGTTGGTGTCTTGCATGCACTTTCGCCCTCTTAACATCCAGAGTTGAGTAA
CATGTCTGCAAGTTGGGTGAATTGGGAAGTGGGGATTTTTCAATCCTACATTTTGCTGTTCTTTTGTTCCAAAGTATTGA
ATTCATGCTCTAGTCATTTCATCCAAAAGTCCGAAACGATAAAGATGCAGGCAAATTTCAAAGTAGGTTGCATAATTTTA
TTTATAACAGTGCGTTGGCAGAGTCTTGGACTCAAGACCTCTTAACTCCGATACCTTATTGAATTCATCCAAAAGTCTGA
ACGATAGAGAGAGGTGGACAATATATTTCAACACAAAAAATATGCAAACCCTGAACCCTTGAAAGTGAAAACATAGCAGT
TTTGCATCATCTTCCCGCCGTGGTTGGCTCGTTTCGGTGCAAGTATTTGGGGCTAGCTACTGGTACGACCGTTGGTTCGA
TGGCTGCGCCCCAAAGTTGCCCCATCCCTGTTGTTTTTGTTTGGGAGACACAAACATATTTCAGGACAATCGTTGGATGA
GATTATTTTGGAACTTGAGGAGTGCTCTCCATTAGGGCATCTGGAGTAGTCATGGGACTGCCTCGGCAGATGACTTGGCC
TATAGGCTTCAATTCGAGGGGACGACCACGCCCTTCCTAGCGTGCGAAGACTGATCCAGAGTCTATTGCATGTTTCTGCA
GAGAAACATCTGTGGTCCGTGGCATATTTTTGATCAGCTCCTGAACACCCGCTCCGAGCGCAA-------CCGTGGGGAC
GGTGCCCAGCCACACACACCGAGCAACGCCCGCAACCGTCGTGCCTCCCGGCTAAATCCGGCACCCCATCGCCGCCTTTT
AAAGCGCGCGCCGCCGCGCCTCTCGTCCCTCTCGCCTGACTCCAGCGAAAAGGAAAAGCTCCTGCACGTACCCCACGTTC
GTGCCGCCTCCACACCACCCGCCGTCTACAGCATAACCAGCACGGTCATGGCGCGCGTGTCCCTGATGATGCTCGCCGCC
GTGGTGCTCGCGTGCGCGCTGCTCGCCACCAGGCATGCGGACGCCGCCGGGGCCGGGGCCG-------------------
--GCGCGGCGGCCCCCGCCCCCGGCGGCTTCGCGTGCAACCCGCTCAAGGACAAGACGTGCAAGCTGGGGGAACCCAAGG
CGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGACGTCGGTCCCCATCCCGGGCGGCGGC
AAGGTCGACCGCGACGGCGATGGAGACACCGACGAGGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGG
CCACTGAGAGGAGCCAAGCCTGACTTCTA-GCGCATGGTTGTAGTATCTTCTTGCATTTGCGTTGCTTGTGTAGTTGTGT
TGCTGCCCAGAAGAAACAGTCTGGCAAAAAAAAAAAAAAGAAGAAGAAGAAAGAAACAGAAAAAGGAAAGAGATGAGAGA
GCGAGCGTGTCACGATGATCCCCGCTAGCTGATGACGAAATTTGCCGGTTGCTCTTGTTTCTTGTTAATGTCGTTGAAGT
TCAGATATTAGTTCTAAATTCTAGTTGATTTAGCCTCGTTTTGGTCTTCCTATTGTTGGCATTCAATAATGTTTGAGCTT
GGTCTACAGACCTTTTTTTTTCCTCCGCCAAAACGTCCTCTCGTCCCCTCCGTCTTCTTTTCATGAAGTTGGAACCTAGT
TGCATCTTCCGCGAGGAATTGTAGAAACTTGTATGCTTTCAACCAAAATTTGTACTATAATTTTGTTGTAACCTAGTTCA
GTTTTGTACAAACTTGTCTGATTTTAA---TCAAAAGTCGCATACATTTGTTAGGTTTGAAGTTGTAGGTAC--AACTGT
AGCTTTTTAGTTGAAATGCTAAAATTATGGAGGTGGTTATCACCGATCTGACAACCATAATCTCAGAGGATTCATCCGAG
AGACCTCAAAGAGCAAGCCGGTCTCGGAGGATTCAGTTCGTGAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TGAGCACTTAGACTAACTGAAAAGTAGAAAGATGTAGCAGTCTC
TTCACAAACAAGAATTAAAATATAAGTAGTACATTTCCTAATGATGTATATATAGGGTCTTCAATGTTTTTTCAACAATT
CATATGCG-----TTCAAGTGCATGAATAAGATATACACATAACTAGTTGAATTTATGATGTATCTCTCACAAAGTCTTG
TACTACAGTTTGCACCGCAATAGGTATTCTCACTGAGTGGGTATTTTCATCCGACCATGTCAAACTCCCAAAGGTGTACC
CACCTTGCACTCTCTTCCTTGCTGTGAACATCACCGTAAACATCATGCTT
>chr6A_675
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TCCTAGCATGCGAAGACCGATCCAGAGTCTACCGCAGGTTTCTGGA
GAGAA----CTGTAGTCTGTTGCATGTTCTTGATCAGCTCCTCAACACCCGCTCCCAGCGTAACCGTGGCCCGTGGGGAC
GGTGCCCAGCCACACACGCCGAGCAACGCCCGCAACCGTCGTGACTCCCGGCTAAATCCGGCATCCCATCCCCGCCTTTT
AAAGCGCGCGCCGCCGGGCCTCTCGTCCCGCTCGCCAGACTTCAGCGGAAAGGAAAAGCTCCTGCACGTACCCCACGTTC
GTGCCGCCTCCACACCACCCGCCGTCTACAGCATAACCAGCACGGTCATGGCGCGCGTGTCGC---TGATCCTCGCCGCC
GCGGTGCTCGCGTGCGCGGTGCTCGCCACCAGGCATGCGGCCGCCGCCGGGGCCGGGGCCGCCGCCGCCG---CCGCCGC
CGGCCCGGCGGCCCCCGCCCCCGGCGGCTTCGCCTGCAACCCACTCAAGGACAAGACGTGCAAGCTGGGGGAACCCAAGG
CGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGACGTCCATCTCCATTCCTGGCGCCGGC
AAGGTCGACCGCGACGGCGATGGAGACACCGACGAGGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGG
CCACTGAGAGGATCCAAGCCTGACTTCTAAGCACATGGTTGTAGTATCTTCTTGCATTTGCGTTGCTTGTGTAGTTGTGT
TGCTGCCCAGAAGAAAGAAACAGAAAAAAGGA---------------------------AAAAAGGAAAGAGATGAGAGA
GTGAGCGTGTCACGATGATCCCCGCTAGCTGATGACGAAATTTGCCAGTTGCTCTTGTTTCTTGTTAATATCGTTCAAGT
TCAGATATTAGTTCTAAATTCTAGTCGATTTGGCCTCGTTTTGGTCTTCATATTATTGGCATTGAATAATGTTTGAGCTT
GGTCTACAAACCCTTTTTTC-CCTCCGCCAAAACGTCCTCTCGTCCCCTCCGTCTTCTTTTCTTG-AGTTGGAACCTGGT
TGCATCTTCCGCG-GGAATTGTAGAAACTTGTATGCTTTCAACCAAAATTTGTATACTAATTTTTATGTAACCTAGCTCA
ATTTTGTACAAACTTGTCTGATATATATAGTCAAAAGTT-----------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------A------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TGAGCACTTAGACTAATTGAAAAGTAGAAAGATGTAGCAGTCTC
TTCACAAACAAGAATTAAAATATAAGTAGTACATTCCCTAATGATGTATATATAGGATCTTCAATGTTTTTTCAACAATT
CATATGACAATCGCTCAAGTGCATGAATAAGGTATACACATAACTAGTTGAATTTATGATGTATCTCTCACAAAGTCTTG
TACAACGGTTTGCACTGCAATAGGAATTCTCACTGAGTGGGTATTTTCATCCGACCATGTCAAACTCCCAAAGGTGTACC
CACCTTGCACTCTCTTCCTTGCTATGAACATCACCGTAAACATCATGCTT
>chr6D_709
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CAGGTTTCTG-A
GAGAAACGTCTGTAGTCTGTTGCATGTTCTTGATCAGCTCCTGAACACCCGCTCCCAGCGCAA-------CCGTGGGGAC
GGTGCCCAGCCACACACACCGAGCAACGCCCGCAACCGTCGTGACTCCAGGCTAAATCCGGCAACCCATCGCCGCCTTTT
AAAGCGCGCGCCGCCGCGCCTCTCCTCCCGCTCGCCAGACTCCAGCGAAAAGGAAAAGCTCCTGCACGTACCCCACGTTC
CTGCCGCCTCCACACCACCCGCCGCCTACAGCATAACCAGCACGGTCATGGCGCGCGTGTCGC---TGATGCTCGCCGCC
GCGGTGCTCGCGTGCGCGCTGCTCGCTACCAGGCATGCGGCCGCCGCCGGGGCCGCCGCCGCCGCCGCCGGAGCCGGCGC
CGGCGCGGCGGCCCCCGCCCCCGGCGGCTTCGCGTGCAACCCGCTCAAGGACAAGACGTGCAAGCTGGGGGAACCCAAGG
CGCCGGAGGACACGGAGGAGGAGGGCGGGCTCGGCACGAAGCTGCCGTCCCTGACGTCGGTCTCCATTCCTGGTGCCGGC
AAGGTCGACCGCGACGGCGATGGAGATACCGACGAGGACGACGAGCTGCCGTCGTTCGACACCCACATGACCATCCTCGG
CCACTGAGAGGATCCAAGCCTGACTTCTAAGCGCATGGTTGTAGTATCTTCTTGCATTTGCGTTGCTTGTGTAGTTGTGT
TGCTGCCCAGAAGAAAGAAACAGAAAAA------------------------------------GGAAAGGTATGAGAGA
GTGAGCGTGTCACGATGATCCCCGCTAGCTGATGACGAAATTTGCCAGTTGCTCTTGTTTCTTGTTAATATCGTTCAAGT
TCAGATATTAGTTCTAAATTCTAGTTGATTTGGCCTCGTTTTGGTCTTCCTATTGTTGGCATTGAATAATGTTTGAGCTT
GGTCTACAAACCTTTCTTTT-CCTCCACCAAAACGTCCTCTCGTCCCCTCCGTCTTCTTTTCTCG-AGTTGGAACCTGGT
TGCATCTTCCGCG-GGAATTGTAGAAACTTGTATGCTTTCAACCAAAATTTGTATACTAATTTTTATGTAACCTAGTTCA
ATTTTGTACAAACTTGTCTGATATA----GTCAAAAGTTGCATACATTTCTTAGGTTTCAAGTTGTAGGTACAAAACTGT
AGCTTTTTAGTTGAGATGCTAAATTTATGGAGGTGGTTATCACCGATCTAACAACCAAG-TCTCATAGGCTTCATTCGAG
AGACATCAAGGAGCCGATAATCCTACATCTACGTTAACCAGCTACGAAGACCTACGTAACCTGCCTGCCTAATCTTCTCG
GCCCCCCTGATTTTTAGGGGGTGGGCCCCTTCTTGCCTAATGATCCACTAATGATGCTCGACGTTGCTATTTACGCAAAT
CACGTAACAAGTATTACGTAGGTCTAGCATTGCCCTCAAGGAGCAGGCCGGTTTGTGGTGGGACTTCCTATCCTCACGCC
CGTTTTGATCCTTGTAAACCTCTTCAAAGTTTTTTCTTTCTAAATATATTCAGATAGAGATTCTTTTCCCGTGTCAGTTT
CAAGAAAAAGTTGTACGGAGATTTTTCATTTTAGTTGAAAGTTTGATTTATTTTTCTTTCAACTTCTATTGAATGTTGAT
CACCAACGATGCAACTAGAAATAAAAGCTGGCGGTAGAGGAGGTAAACGGAGAGGAGGCGCTTCTTCCCCACGGTGACTA
TTACGCTTAAATCTCTACTTTTGATCTACATAGAAAGTCATAATTTATGAGAGGGTACATATATGTAAAGATCTTATTAG
ATTTTTCTTTTCTTCAGAATTCATGTTTTTGGCTCGATGGTTTGACTCTTTGAGTTTAGTTTTGTTTGTTTTCATGTTGC
AATTATAATTTTTCCTCAAACTGTTAGAAGACAGATGAAAATGTTGGATTCTCTCGTTTGGTACAATTGTAGTAAGTGCC
GTACTAATTAAGAAAAAAATAGACTCCCAAAACCCAAGTAAAGATAATCGATTTTACAGATTTAAAACAAGGGACTAATT
TTCTGAATTTTGCTATTTTGTTATAATCTACATAAGTGAGCACTTAAACCAACTGTAAAGCAGAAAGATATAGCAGTCTC
TTCACAACCAAGAATTAAAATATAAGTAGTACATTTCCTAATGATGTATATATAGGATATTCAATGTTTTTCG-ACAATT
CATATGACAATCATTCGAGTGCATGAATAAGGTATATACA----TAGTTGAATTTATGATGTATCTCTCACAAAGTCTTG
TACTACAGTTTGCACTGCAATAGGTATTCTCACTGAGTGGGTATTTTCATCCGACCATGTCAAACTCCCAATGGTGTACC
CACCTTGCACTCTCTTCCTTGATGTGAACATCACCGTAAACATCATGCTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------S-------------SS---S-------S-
-------S-----S---S--S----S--S--------------------------S------------------------
-------------------------------------------S-------------------S----------------
-----------------------------S------S-------------------------------------------
-------------------------------------------------------------S-SSS--------------
-S--------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S----S--S----S----
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
----------------S-SS-S-SS----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-S--------------------------------------------S----------------------S-----S----
-------------------------------S-------------------------------S----------------
--------S-----------S-----------------------------------------S--S-----------S--
-------------S----------------------------------------SSS-------SS--------------
S---------------------S-SS------------S----------S--------S---------------------
--------------S--------S-------------------------S-------SSS-----S---S-----S----
----S----S----SSSSSSSS--SSSSSS-SSSSSSS-SSSS-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
------SS-----------------------S------------------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------
>forward_478
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ACTGGTACGACCGTTGGTTC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_2005
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CTCAAAGAGCAAGCCGGTCT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
