>input_sequence_83401
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----------------------------------------------------------ATGCTGGGCGCCGTCCTCCGCG
GCCCGGCCTCTCCGATCCCGCCTCTCTTCCCCGCGCCGGGGCGCCCACTCATCCACCTCTCTCGCCGCCTCCCTGCCGCG
CCCGCCATGGCCGACGCCAAGAAGACCGACGCGCCGGCGACCCCGGCCCCGGAGCCGCCCGAGAAGCCGCTCCCCGGCGA
CTGCTGCGGCAGCGGCTGCGTCCGCTGCGTCTGGGACATCTACTACGACGAGTTCCAGGACTACCAGAAGGCCCTCGCCG
CCCACTCCTCCGCGTCCCCCGCCGCCGATCCCAGCGGCGACAGCAAGGCCTCCGCCGACGAGAAGA---TCAAATCATGA
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>chr5D_1_TraesCS5D01G325100
ATAGTGTTGAGTCATTCATGTTTGTTTGTAAGAGTGAAGTTTAAACCCCTGTTATTCTGATGCAGCTACCTTTGGCTTTG
CCGAGGTCGAGCGTTGTAAAACGTCTTATGATGGTTTCTGCTTTGACTTAATAAAAGTTTGGGT-----GGAGGGGGGCT
TTGATT--AAAAAAACATCAAGTTGATTGGAGGATTTGGTGTCTCCGCAATGATATGCTTCATGGCAAGAATGCTCCACC
GTTGAGGTGTCAAGAGGTTACCTGTGCAACTACTTTTCCTTGTCGGCTTAGGTAGAGAAGCAGTCTATTAAAAGTACAGT
AAAAGAAAAAGCATCTATCCAAGTATTCACCTGCAGCGATCCTTCAAAGCAGCCTAAGTAGAGCCCCACATGGCCTCCGC
CACCTCCTAACTAGGTGGCTCTCTCGGTTAACGGGTCGTTCGTGAAAAAAATGGT-------------------------
---------------------CCGTTTTGGCTTACAAATTCTAGTTTCATTGCAATGATGCCCTCGAAGCCAAAATTAGT
GTGATGATGGAGAGGATTGCACTAACTCTACAATAGTCATAGCTACTTGTGGTGATCTAATCGAACAATTTCACTACCGC
CTCTACACTAACCAACTAGTCACTGGAGTGTTCCTCTTATGGACACTTGGTGTTGGAGATCGAAACCATCTTGAAGAACC
ATGGGTTTATTTCGCTGAAAATTGCACGCAACCAAAATAGAGTTTGTCACAGCCTTGCTAATCTATGGTGTTACGAGGTA
GCACCGCTTGTTGGTTGCGCCATGTGCCAGACAATGTTTCTTTGGCCGTATTTA--------------------------
-------------------------------------------GCAGATTATAACTCTTTTTCTAAGGACTAATACTTAC
TACT---------------------------ATTCCTTCGCAA----TTTGTTTTTGCCATAGC----------------
---------AACACGACGCGCCGCCGTGTGTGTTCCCTGCGCTCGATCGCTTGCGCCAATTGGACTCGTCCTCCCTACAA
ACTCCAGCCAACCAATCGGGAAACGACTTCCCATCGCTTTCCCCTTCCCCCCGCCCGCATGCTGGGCGCCGTCCTCCGCG
GCCCGGCCTCTCCGATCCCGCCTCTCTTCCCCGCGCCGGGGCGCCCACTCATCCACCTCTCTCGCCGCCTCCCTGCCGCG
CCCGCCATGGCCGACGCCAAGAAGACCGACGCGCCGGCGACCCCGGCCCCGGAGCCGCCCGAGAAGCCGCTCCCCGGCGA
CTGCTGCGGCAGCGGCTGCGTCCGCTGCGTCTGGGACATCTACTACGACGAGTTCCAGGACTACCAGAAGGCCCTCGCCG
CCCACTCCTCCGCGTCCCCCGCCGCCGATCCCAGCGGCGACAGCAAGGCCTCCGCCGACGAGAAGA---TCAAATCATGA
GACCCCAGGATTCAGGACCCGTATGTGTATGCTTTGACTTCCCCTGTTCTCAGATTGGATTCTTGGTCGTGTAAGATATG
TCAGCATTACTCACAGCATTACAGTTAAACATCCATTGTATTCTCACCGTGTATGCTGCAATT-GTACTTACTGCTCATC
ATTCTTTGCGTGACCAAAGATGCCCCTGGTTATGAATACAAGTTCCATTTTT--GTGCAGCAGTTCAATTCATGTTTGCA
CATACTTGCTGCAAAAATTGGTCAGATTTGTGTCACCAAAGATGCTCCTGGATATC-AATAGAAGTTCCTTTC-TTGTGC
AACACTTCAATTCATGTTGCAGATACTGCTGAAACTGGCCAAATTTGGTGCGACAAA--ATTATTTCACCATAGTAAAAC
TCTAGCCAAGAAGCCCCAACCAATCACCAATGCTATTAGAATCAGGAGAGATTAGCGAGTTTGTTACATCGTTTGTTCTC
ATGACCGATGACGGCACCGGTACATACTACAAAGGTGTTACTTATTCATGCATTCACATAGAACCTATTGATCATCGTCC
GAACCACCAAAGGGATCCTCACCGTGTGTGTGCCGTCCTCCCATGTCAGGCTGCCAAAGGTGTACCTCCCCTGAACCTTC
AGTTTTGCCTGGAATGCCACCTTGAATGTTAACCTGTTGACTGTCGAGTTGAAGGTCAGGAGCGAGGGGTTCACGGTGAC
GTTCACCCCTGGAGGTGCTTCCACACGGGCTCTGTACTTGGACGTGACCGGGCCGACATTGGTGACCGTTCTCGACACCG
ACAGTTTGCCCCTCAGTTCAGGAATGGTAATGGATGGGACGTTCAGGTTCAGCTGCGATTTTGGCGAATGTTGACAGGGT
GTGTGCTGCTGAACCATGGAGGCGATGGCTGAGTTGTTGTAGCCCATGGAGCAAAGGAAGCGCACGTAATCAGATGGTCT
CATGTCGTACACGAGACCAGGGTGTGCAGCCCTATTTGGATCCACAT
>chr5A_5
TGTTGAGTGTT---TTCATGTTTGTTTGTAAGGGCGAAGTTTAAAACCGTGTTATTCTGCTGCAGCTACATTTGGCCCGC
ACTGAGGTTAAGCTTT------GTCTAATGATGGTTTCTGCCTTGGCTTAATAAAAGTTCAGGGGTGCAGGAGGGGGGCT
TTATTGCAAAAAAATCATCAAGTTGATTGGAGGATATGGTGTCTCTGTAATTATATGCTTCTTGACACTGAGGT------
-------------GAGATTACCTATGCAGCTACTTTTCCTCCTCGACTCACAAAGAGAAGCAGTCTATTAAAAGTACAAT
AAAAGGAAAGGCATCTATCGAAGTATCCACTTGCAGTGATCCTTCGAAGCAGTCTAAGTAGAGCCCCACATGGCCTCCGC
CACCTCCTAACTAGGTGGCGCTCTCGGTTGACGGGTCGTTCGTGAAAGAAACTGGTAAAGCGGGTACTGGAATGGTGCTT
AGAGATTCAGAGGGGTTGTAACCATTTTGGCTTACAAATTTTAGTTTCATTACAATAATGCCCTCGAAGCCAAACCTAGT
GTGATGACGGAAAGGAATGCACTAAGCCTACAACAATCATAGCTTCA-----TGATCTAATCGAACAATGCTACTAC-GT
CGCTGCGCTAACCAACCAGTCA-TGGAGCGTTCCTCTTATGGACACTTGGTGTTGAAGATCAAAAGCATCTTGGAGAACC
GTCAATTTATTTCGTTGAAAATTGCACGCAATCAAAATAGATTTTCTCATTACCTTGCTAATCTACGGCGTTACGAGATA
GCACCGCTTGTTGGTTGCGTCATGTGCCAAACAATGTTTCTTTGGTCGTATTTAAAACAGTTTTGCTAAAGCACGTCTAG
ATATCTAAGTCATATATCATTGATCTTACATCGAGATTCGTGTGAATATTTTTTTTCTTTTTTTTATGCTTGATTCACTC
ATTTAGATGTGCAATAACTAGAGCACATCTAATTCCTTCCTAA----TTTTTTTTGTCCATGGCAGTGCTTTTTAA-GAG
TTTTCGCCAAACACGACGCGCCGCCGTGTGTGTTCCCTCCGCTCGATCGCTTGCGCCAGTTGGACTCGTCCTCCCTCTAA
ACTCCAGCCAACCAATCGGGAAACGACTTCCCATCGCTTTCCCCTTCCCCCCGCCCGCATGCTGGGCGCCGTCCTCCGCG
GCCCGGCCTCTCCGATCCCGCCTCTCTTCCCCGCGCCGGGGCGCCCTCTCATCCACCTATCCCGCCGCCTCCCTACGGCG
CCCACCATGGCCGACGCCAAGAAGACCGACGCGCCGGCGACCCCGGCCCCGGAGCCGCCCGAGAAGCCGCTCCCCGGCGA
CTGCTGCGGCAGCGGCTGCGTCCGCTGCGTCTGGGACATCTACTACGACGAGCTCCAGGACTACCAGAAGGCCCTCGCCG
CTCACTCCTCCGC---------CGCTGATCCCAGCGGCGA---CAAGGCCTCCGCCGACGAGAAGAAGATCAAATCGTGA
GACCCCAGGATTCAGGACCCGTATGTGTATGCTTTGACCTCTCCTGTTCACAAATTGGATTCTTGGTCGTGTAAGATATG
TCAGCATTACTCACAGCATTACAGCTAAACATCCATTGTATTCTCACCGTGTATGCTGCAATTTGTACTTGCTGCTCATC
ATTCTTTGTGTGACCAAAGATGCCCCTGATTATGAATACAAGTTCC---TTT--CTGCAGCAGTTCAATTCATGTTTACA
CATACTTGCTGCTAAAATTGGTCAATTTTGTGTCGCCAAAGATGCTCCTGGTTATCAAATAGAAGTTCTTTTC-TATTGC
GACTCTTCAATTCATGTTGCAGATACTGCTGAAATTGGCCAAATTTGGTGCGACAAAATATTATTTCACTATAGTAAAAC
TCTAGCCAAGAAGCCCCAACCAATCACCAATGCTATTAGAATCAGGAGAGATTAGCGAGTTTGTTACATCGTTTGTTCTC
ATGACCGACGACGACACCGGTACACACTACAAAGGTGTTACTTATTCATGCGTTCACATAGAACCTATTGATCATCGTCC
GAACCACCAAAGGGATCCTCACCGTGTGTGTGCCGTCCTCCCATGTCAGGCTGCCGAAGGTGTACCTCCCCTGAACCTTC
AGTTTGGCCTGGAATGCCACCTTGAATGTTAACCTGTTGACTGTCGAGTTGAAGGTCAGGAGCGAGGGGTTCACGGTGAC
GTTCACCCCTGGAGGTGCTTCCACACGGGCTCTGTACTTGGACGTGACTGGGCCGACATTGGTGACCGTTCTCGACACCG
ACAGTTTGCCCCTCAGTTCAGGAATGGTGATGGATGGGACGTTCAGGTTCAGCTGCGATTTTGGCGAATGTTGACAGGGT
GTGTGCTGCTGAACCATGGAGGCGATGGCTGAGTTGTTGTAGCCCATGGAGCAAAGGAAGCGCACGTAATCAGATGGTCT
CATGTCGTACACAAGACCAGGGTGTGCAGCCCTATTTGGATCCACAT
>chr5B_449
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---------------------CCGGTTTAGCTTACAAATGTCAGTTTCATTGCAATAATGCCCTCGGAGCCAAAATTAGT
GTGAC-ATGGAAAGGATCGCACTAACCATACAACAATCAAAGCTTCCTC-----ATCTAATCGAACAATTCTACTACCGT
CGCTGCACTAACCAACCAATCACAGGAGCGTTCTTCTTATGGACACTTGGTGTTGGAGATCAAAAGCATCTTGGAGAACC
ATGAGTATATTTCGTTGAAAATTGCACGCGATCAAAATAGAGTTTCTCATTGCCTTGCTAATCTACTGCGTGACGAGGTA
GCACCGCTTGCTGGTTGCGCCATGTGCCGGACAATCTTTCTTTGACCGTATTTA--------------------------
-------------------------------------------GCA--------------TTCTAAGGATTAATACTCAC
TA------------------------------TTCCTTCGCTTTTCTTTTCTTTTTGCTATGGCAGTGTTTTTTAAAGAG
TTTTCGCCAAACACGACGCGCCGCCGTGTGTGTTCCCTGCGCTCGATCGCTTGCGCCAGTTGGACTCGTCCTCCCTACAA
ACTCAAGCCAACCAATCGGGAAACGACTTCCCATCGCTTTCCCCTTCCCCCCGCCCGCATGCTGGGCGCCGTCCTCCGCG
TCCCGGCCTCTCCGATCCCGCCTCTCTTCCCCGCGCCGGGGCGCCCTCTCGTCCACCTCTCCCGCCGCCTCCCTACGGCG
CCCGCTATGGCCGACGCCAAGAAGACCGACGCGCCGGCGACCGCGGCCCCGGAGCCGCCCGAGAAGCCGCTCCCCGGCGA
CTGCTGCGGCAGCGGCTGCGTCCGCTGCGTCTGGGACATCTACTACGACGAGCTCCAGGACTACAAGAAGGCACTCGCCG
CCCACGCGTCCGC---------CGCCGATCCCAGCGGCGA---CAAGGCCTCCGCCGACGAGAAGAAGATCAAATCATGA
GACCCCAGGATTCAGGACCCGTATGTGTATGCTTTGACCTCTCCTGTTCACAAATTGGATTCTTGGTCGTGTAAGATATG
GTGGCATTACTCATAGCATTACAGCTAAACATCCATTGTATTCTCACCGTGTATGCTGCAATTTGTACTTACTGCTCATC
ATTCTTTGTGTGACCAAAGATGCCCCTGGTTATGAATACAAGTTCC---TTTTTGTGCAGCAGTTCAATTCATGTTTGCA
CATACTTGCTGCTAAAATTGTTCAAATTTGTGTCGCCAAAGATGCTCCTGGTTATC-AATAGAAGTTCCTTTTTTTGTGC
AACACTTCAATTCATGTTGCAGATACTGCTGAAATTGGCCAAATTTGGTGCGACAAAAAATTATTTCACCATAGTAAAAC
TCTAGCCAAGAAGCCCCAACCAATCACCAATGCTATTAGAATCAGGAGAGATTAGCGAGTTTGTTACATCATTTGTTCTC
ATGACCGAAAGCGA---CGGTACATACTACAGC-GTGTTACTTATTCATGCATTGACATAGAACCTATTGATCATTGTCC
GAACCACCAAAGGAATCCTCACAGTGTGTGTGCCGTCCTCCCATGTCAGGCTGCCGAAGGTGTACCGCCCCTGAACCTTC
AGTTTGGCCTGGAATGTCACCTTGAATGTTAACCTGTTGACTGTCGAGTTGAAGGTCAGAAGCGAGGGGTTCACGGTGAC
GTTCACCCCTGGAGGTGCTTCCACATGGGCTCTGTACTTGGACGCGACCGGGCCAACATTGGTGACCGTTCTCGACACCG
ACAGCTTGCCCCTCAGTTCAGGAATGGTGATGGATGGGACGTTCAGGTTCAGCTGCGATTTTGGCGAATGTTGACAGGGT
GTGTGCTGCTGAACCATGGAGGCGATGGCTGAGTTGTTGTAGCCCATGGAGCAAAGGAAGCGCACGTAATCAGATGGTCT
CATGTCGTATACGAGACCAGGGTGTGCAGCCCTATTTGGATCCACAT
>SNPs
SSSSSSS--SSSSS------------------S-S----------S--S----------S---------S------SSSS
S-SSS-SSS-SSS--SSSSSSS----S--------------S---S-------------SS--S----------------
--SS-S--------S--------------------S---------S-S---S---------S--S--SSS-S-SSSSSSS
SSSSSSSSSSSSS---S------S----S-----------SS---S--S-SSS-------------------------S-
-----S---S---------S------S---S-----S--------S------S---------------------------
-------------------S---------S-----------------S---SS-S-------------------------
----------------------------------------S---------------S-----------------------
-----------S--------------S------S-S--------S-S-SSSS------------------SS-------S
-S--S-----------S-----------S--------------------------------S---S-------S------
---S----------S----------------S-------------S---SS--------------S--S-----------
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----------------------------------------------S---S-SSS--------------S-------S--
--S-----------------------------------------------S----------S------------------
----------------------------------------------------------S---------------------
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----------------------------------------------S--------------S------------S-S---
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----------------------------------------------------S---------------------------
-------------SSSSSSSSS------------------SSS-------------------------------------
--------------------------------------S--S-------S--S---------------------------
------------------------S-------------------------------------------------------
--------S-------------------------------------SSS-------------------------------
------------S-----------S---------S----------------S----------------------------
----------------------------------S---------------------------------------------
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--------S----S------------------------------------------------------------------
-------------------------------------------------------S------------------------
-----S--------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
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>forward_373
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---------------------------------CAGCGATCCTTCAAAGCAGC---------------------------
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>reverse_2009
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--------TGACGGCACCGGTACATACT----------------------------------------------------
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