>input_sequence_83398
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-----------------------------------------------------------ATGGACCGCAGCAATGGCAAC
GGC------GGCGTGAGGAACGGCGGGAGGCTGGAGCTGCAGCTGAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGG
CCATGACGACAGCGGGTCGTCGTCGCCGAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGTAGCAAGTCGCCGATGGTGA
TCGGGGCCTGCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGATTACCCCACCTGCATCAACTGCAAGCAGCCC
TGCCTCGTGGACCTGCTCCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAA
GTGA----------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G133900
CTACCAAGCTACCCCGAGTCAACCCTACAATGCTATAAATTCTGCTGTCAGGTCATACCGGCGGGAGTAAACTCTCCTTC
GTAAG----TACTCCTGTAAGAATTGAAATAAAGACGCAATAGGGTTATA------------------------------
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------------------------AAAGCTTGCTCGTGTTTGGGTGAGATGTCATTTCACATCACAGAGGAATTCAATGG
ACTGCAGGATTCCATTGAGTATACA----------------ATGGGTACGGCCAAGCCGGCCTCGCCGCTCGGTTAAAGA
CACCATTTACGTAAAGTGGCGCATCTCCTATTTAAGATCCATTTACTCACATAACCAGTGGCACATTGATGCACTATACT
TATTTTCGCTGGATGGAACCCTTCATGCAGCTGCTGCGCATCAGTAAAGGGCGTTCAAGATGTTGACACTGCGCACACAG
CTATTGCCAATAGCATGGTGTTGGCAGCGTCGCCATGAATACACCCAGAGGGCGACCACGAAAATAAGAGTAAATTTGGC
CTCACAAATGTGTCTAGTTTTCCACCTTATAGATTTCTCCTGTTTTCCTGTAGTACGTACTGAGGTTGGTATAAGCTCAT
AAAATATGATTTTGGAGTATGTATTTTTCAAAAAC--TAATTAACTTTATGATGTGCAAGATCACAAGAAGAGAGTAGGG
TTGGAGGGATGTGGAAGGAAGTGAAGAGAGGAAGAGGACGGAGGGTCCTTGCTGTTGCATTAATAGCAAGTAAAGAGAAG
CATTGACCTCTCCTCCTATGCTTGGAACCCCTCCTATATAAAGACCTTCGGGCCTTTCAAAGTCCTCAACCAAATACACA
TCGCAGCAGTTGCTCAACTCTTTCTCTCCTCTCCTCTTCACGGGATTCAGGTAGCAACTCTGCTTTTCCTTGTGTTCTTC
CTCACGTAGGAGTATGTTATGCAGCAGTGCCTC----TGTTCTGCCCACCTGAAGAGGAAATCT----------------
---TGTTTTGTTATCTAATATGCATATTCTTGTTTGTGCAGTGTGATTGTCTGTGAGTCATGGACCGCAGCAATGGCAAC
GGC------GGCGTGAGGAACGGCGGGAGGCTGGAGCTGCAGCTGAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGG
CCATGACGACAGCGGGTCGTCGTCGCCGAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGTAGCAAGTCGCCGATGGTGA
TCGGGGCCTGCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGATTACCCCACCTGCATCAACTGCAAGCAGCCC
TGCCTCGTGGACCTGCTCCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAA
GTGAAGAAAAATCAACGGTGGTGCGGGCGCGTGCCTGTCCAGTGGATGCTCACACGGATGGTTAGCTCGATCAGGCGATG
CGGGAATCTTGAGGCTGGAGGAGTGAGTGACCGCCGTCGGATCATCCACTGGACAGGGTTGGGTCTCTGAGTAGCAGGCT
ACTGAGCTTAAGTAGTTACTTTCCTTTGTGTTGCTGGGTTG----------GTCAGTTTAATTAGCGTTATGGCAAGTTT
CCGATTGGTGTTGTGGTAGCAGTGGTCTTCTAAGTTTGTAATCCCCTGTTTGCTGAAGAAATGCAAGACCTAACTAACGG
TATGCAGCAGCTAAGCTAGCGATGGTTGTTTCCAATAATTTG----TAGTCAACTGTGCTTCCTCCATGTTTTTCTGGTT
TTTGTTCAATGATGA-----------------------------------------------------------------
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--CTTAGTTAGGTAG-----------------GATGCAAGCGGCGGCCCGCTTATCCCGCCCGCGAAACGCATCAATTAC
TAGCTGCCAAGTTAACACTAATTTTGTAGTA-------------------------------------------------
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-----------------------------------------------------------CCGCGAAACCCGTCGCCGCTT
-GCATCCTGAGGTGCGAGGGTTCGAACCAAGTATTTGAGCCTTGCTTGCATACGATTTGCATAGCTCTGTTCGTCGTCCA
GTAATACTTCAGGTGTCGTGAGCACTATCCGATCGAGAACCTACGGCTCAGATCGACTGTCGGACTGCT-----------
GAAACACAGCAGCATCGATCTCTGCAAAGTACAGGTACCGGTGC-TCACTGCAGGGACTGACACACAGACTGGAAGAAAT
TAATT----GATAAACAAGGGCATCATTACACAATTATATAGTACGACGGGCAAATCTCTGGGCGCGGGAGCTGCACTTC
AAGTGCGTCTGCACGGAGGTCGGATGCATGTCTCGGAAGAAATAGATCCGCTGCCTTGCACAAGCAAACCCATGGCTTTC
TCAAGG------CACGGCCTGATCAAAAGGGAGATTATATAAGGAACAAAACTAAG--------ATATCCTAAAACCTCT
CGATCGGGCAGAAAGAAAATTCCTTGAGATCTTTTTGGTGT
>chr5A_1
CTACCAAGCTACCCCGAGTCAACCCTACAATGCTATAAATTCTGCTGTCAGGTCATACCGGCGGGAGTAAACTCTCCTTC
GTAAGTACTCACTCCTGTAAGAATTGAAATAAAGACGCAATAGGGTTATA------------------------------
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------------------------AAAGCTTGCTCGTCTTTGGGTGAGATGTCATTTCACATCACAGAGGAATTCAATGG
ACTGCAGGATTCCATTGAAGAGCAAAGGGCATTGAGTATACATGGGTACGGCCAAGCCGGCCTGGCCGCGCGGTTAAAGA
CACCATTTACCTAAAGTGGCTCATCTCCTATTTAAGATCCATTTACTCACATAACCAGTGGCACATTGATGCACTATACT
TATTTTCGCTGGATGGAACCCTTCATGCAGCTGCTGCTCATCAGTAAAGGGCGTTCAAGATGTTGACACTGCGCACACAG
CTA-TGCCAATAGCATGGTGTTGGCAGCGTCGCCATGAATACACCCAGAGGGCAACCACGAAAATAAGAGTAAATTTGGC
CTCACAAATGTGTCTAGCTTCCCACCTTATAGATTTCCCCTGTTTTCCTGTAGTACTA----AGGTTGGTATAAGCTCAT
AAAATATGATTTTGGAGTATGTATTTTTCAAAAAC--TAATTAACTTTATGATGTGCAAGATCACAACAAGAGAGTAGGG
TTGGAGGGATGTGGAAGGAAGTAAAGAGAGGAAGAGGACGGAGGGACCTTGCTGTTGCATTAATAGCAAGTAAATAGAAG
CATTGACCTCTCCTCCTATGCTTGGAACCCCTCCTATATAAAGACCTTCGGACCTTTCAAAGTCCTCAACCAAATACACA
TCGCAGCTA--GCTCAGCTCTTCCTCTCCTCTCCTCTTCACGGGATTCAGGTAGCAACTCTGCTTTTCCTTGTGTTCTTC
CTCATGTAGGAGTATGTTATGCCGCAGTTCTTC----TGTTCTGCACACCTGAAGAGGAAATTT----------------
---TGTTTTGTTATCTAATATGCATATTCTTGTTTGTGCAGTGTGATTGTCTGTGAGTCATGGACCGCAGCAATGGCAAC
GGC------GGCGTGAGGAACGGCGGGAGGCTGGAGCTGCAGCTTAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGG
CCATGACGACAGCGGCTCGTCGTCGCCGAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGAAGCAAGTCGCCGATGGTGA
TCGGGGCCTGCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGACTACCCCACCTGCATCAACTGCAAGCAGCCC
TGCCTCGTGGACCTGCTGCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAA
GTGAAGAAAAATCAACGGTGGTGCGGGCGCGTGCCCGTCCAGTGGATGCTCACACGGATGGTTAGCTCGATCAGGCGATG
CGCGAATCTTGGGGCTGGAGGAGGGAGTGACCGCCGTCGGATCATCCACTGGACAGGGT-GGGTCTCTGAGTAGCAGGCT
ACTTAGCTTAAGTAGTTACTTTCCTTTGTGTTGCTGGGTTGCAATGGGTTGGTCAGTTTAATTAGCGTTATTGCTAGTTT
CCGATTGGTGTTGTAGTAGCAGTGGTCTTCTAAGTTTGTAATCCCCTGTTTGCTGAAGAAATGCAAGACCTAACTAACGG
TATGCAGCAGCTAAGCTAGCGATGGTTGTCTCCAAATAATTTGTACTAGTCAACTGTGTTTTCACCATGTTTTTCTGTTT
TTTCTTCAAGGACTTAATTTTTTTT-------------------------------------------------------
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---------------------------------------------------------------------AGGGATTCAAG
GGCTTAATTAGGTAGGGTGCGAGTAATATATCGATGCAAGCGGCGGCCCACTTATCCCGC----GAAACGCATCAATTAC
TACCTGCCAAGTTAACACTAATTTTGTACTGCCGTGA-------------------------------------------
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-----------------------------------------------------TATTGTCCGTGAAACCCGTCCCCGCTT
TGGATCCTGAGGTGCGAGGGTTCGAACCAAGTATTTGAGCCTTGCATGCGTACGATTTGCATAGCTCTGTTCGTCGTCGA
GTAAT-CTTCAGGTGTCGTGAGCACTATCCGATCGAGAACCTACGGCTCAGATCGACTGTCGGGTGAGGCATGGACTGGC
GAAACACAGCAGCATCGCCCTCTGCAAAGTACAGGCGCCGGTGCTTCACTGCAGGGGCTGACACACACACTGGAAGGAAG
TAAAAGCAGGATAAACAAGGGCATCATTACACAATTATATAGTACGACGGACAAATCTCTGGGCGCGGGAGCTGCACTTC
AAGTGCGTCTGCACGGAGGTCGGATGCATGTCTCGGAAGAAATAGATCCGCTGCCTTGCACAAGC-AACCCATGGCTTTC
TCAAGG------CACGGCCTGATCAAAATGGAGATTATTAAGGTGCAAAAAACAGAGATACATAATATCCTAAAACCTCT
CGATCGGGCAGAAAGAAAATCCCTTGAGATCTTTTTGGTGT
>chr5B_1
CTACCAAGCTACCCCGAGTCAACCCTACAATGCTATAAATTCTGCTGTCAGGTCATACCGGCGGGAGTAAACTCTCCTTC
GTAAGTACTTACTCCTGTAAGAATTGAAATAAAGACGCAATAGGGTTATAAAAGCGGAAGCAGCTCCCCTAACGTACGTT
ACACGCCGGTTGGGGACACTAGCATGTGGGGTTGATTCACAGCGAGCCCACCTGTCAATCGCCGAACGGCACCCTGCCGC
ACGGCAGAGGATCCGCGTCCTATAAAAGCTTGCTCGTGTTTGGGTGAGATGTCATTTCACATCAAAGAGGAATTCAATGG
ACTGCAGGATTTCATTGAAGAGCAAAGGGCATTGAGTATACATGGGTACGGCCAAGCCGGCCTCGCCGCTCGGTTAAAGA
CACCATTTACCTAAAGTGGCGCATCTCCTATTTAAGATCCATTTACTCACATAACCAGTGGCACATTGATGGACTATACT
TATTTTCGCTGGATGGAACCCTTCATGCAGCTGCTGCGCATCAGTAAAGGGCGTTCAAGATGTTGACACTGCGCGCACAG
CTATTGCCAATAGCATGGTGTTGGCAGCG-CGCCATGAATACACCCGGAGGGCAACCACGAAAATAAGAGTAGATTTGAC
CTCACAAATGTGTCTAGCTTCCCAACGTATAGATCTCCCCTGTTTTCCTGTATTACTA----AGGTTGGTATAAGCTCAT
AAAATATGATTTTGGAGTATGTATTTTTCAAAAACCTTAATTAACTTTATGATGTGCAAGATCACAAGAAGAGAGTAGGG
TTGGAGGGATGTGAAAGGAAGTGAAGAGAGGAAGAGGACGGAGGGTCCTTGCTGTTGCATTAATAGCAAGTAAAGAGAAG
CATTGACCTCTCCTCCTATGCTTGGAACCCCCCCTATATAAAGACCTCTGGACCTTTCAAAGTCCTCAACCAAATACACA
TCGCAGCAGTTGCTCAACTCTTTCTCTCCTCT-----TCACGGGATTCAGGTAGCAACTCTGCTTTTCCTTGTGTTCTTC
CCCAT------GTATGTTATGCAGCAGTACTTCTATATATTCTGCTCGTCTGAAGAAGAAATATATTCTGATATAATTAA
TCCTGTTTCGTTATCTAATATGCATATTCTTGTTTGTGCAGTGTGATTGTCTGTGAGTCATGGACCGCAGCAATGGCAAC
GGCGGCGCCGGCGTGAGGAACGGGGCGAGGCTGGAGCTGCAGCTGAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGG
CCATAACGACAGCGGGTCGTCGTCGCCAAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGAAGCAAGTCGCCGATGGTGA
TCGGGGCCTGCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGATTACCCCACCTGCATCAACTGCAAGCAGCCC
TGCCTCGTGGACCTGCTGCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAA
GTGAAGAAATATCAAC---GGTGCGGGCGCGTGCCCGTCCAGTGGATGCTCACACGGATGGTTAGCTCGATCAGGCGATG
CGCGAATTTTGAGGCTGGAGGAGTGAGTGACCGCCGTCGGATCATCCACTGGACAGGGTTGGATCTCTGAGTAGCAGGCT
ACTTAGCTTAAGTAGTTACTTTCCTTTGTGTTGCTGGGTTGCAGTGGGTTGGTCAGTTTAATTAGCGCTATGGCTAGTTT
CCGATTGGTGTTGTAGTAGCAGTGGTCTTCTAAGTTTGTAATCCCCTGTTTGCTGAAGAAATGCAAGGCCTAACTAACGG
TATGCAGCAGCTAAGCTAGCGATGGTTGTCTCC-AATAATTTGTACTAGTCAACTGTGTTTTCACCATGTTTTTCTGGTT
TTTCTTCAAGGACTTCATTAGGTTTTTCTCTCTGAGGGATTCGGAGGGAAATTAGGTTGGCCACCAACTTCGCCTGCCTT
TCTATCCGAGTTCTTCCCTCTTGATGCTTTTGAACGACTCCTAAATTTCACAAAATCCTTTTTTTCTTATTTGAAATCCA
AATCAAAATGCCTCAACTTGATAAATTAACTTATTTCTCACAATTCTTCTGGTTAGGTTTTTCTCTATGAGGGATTCAAG
GGCTTAATTAGGTAGGGCGCG--------------------GGCGGCCCGCTTATCCCGC----GAAAAGCATCAATTAC
TAGCTGCCAAGTTAACACAAATTTTGTAGTACTAGTACTACTGTGATACTCCCTCCATTCCACAATGTAGTGCCTATAGA
TTTTTGTGAAAGTCAAACTTTGCCAACTTTGACCAAGTGTATAGAGAAAACTATCTACATCTACAATATCAAACATATAC
ATCCTCAAAATATAACTCGCGATGTATCCAGTGATGTCCATTTGGTATTCTAGATGTACCTACTTTTCTTCAAAGTTTGT
AATGTTTGACTTTTGTAAAAATCTATAGGCACTACATTATGGAACGGAGGGAGTATTGTCCGGGAAACCCGGCCCCGCTT
TGCATCCTCAGGTGCGAGGGTTCGAACCAAGTATTTGAGCCATGCATGCATACGATTTGCATATCTCTGTTC-TCGTCGA
GTAATACTTCAGGTGTGGTGAGCACTATCCGATCGAGAACCTACGGCCCAGATCGACTGTCGGGTGAGGCATGGACTGTC
GATACACAGCAGCATCGATCTCTGCAAAGTACAGGTACCGGT---------CAGGGGCTGACACACACACTGGAAGGAAG
TAAAAGCTGGATAAACAAGGGCATCATTACACAATTATATAGCACGACGGGCAAATCTCTGGGCGCGGGAGCTGCACTTC
AAGTGCGTCTGCACGGAGGTCGGATGCATGTCTCGGAAGAAATAGATCCGCTGCCTTACACAAGC-AACCCATGGCTTTC
TCAAGGGCAAGGCACGGCTTGATCAAAAGGGAGAT----TAAGGAACAAAACTATG--------ATATCCTAAAACCTCT
CGATCGGGCAGAAGGAAAATTCCTTGAGATCTTTTTGGTGT
>SNPs
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------------------SS-SSS--------------------------------------------------------
----------S---------------------------------------------------------------------
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-----------------------------------------------------S--------------------------
-----------------S--S----------------S------------------SSSSSS------------------
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---------------------------------------------------S----------------------------
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----S-----------------------S-S--------------S----------------S-----------------
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------------------------------------------------------------S-------------------
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-----------------S--------------------------------------------------------------
-----------------------------------S--------------------------------------------
--S-----------------------------------------------------------------------------
---S----------------------------------------------------------------------S-----
--------------S-----------------------------------------------------------------
-----------------------------S-----SS-S--S----------------S--S-S----------------
---S-----S--SSS-----------------------------------------------------------------
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------S-----------------------------------------------------SSSS----------------
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--------------------------------------------------------------S----------S------
---------------------------------------------S--------------------------------S-
---------------------------------------------------------------SSSSSS-----------
--------------------------------------------------------S----------S--------S--S
---SS---------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------S---------------S-------------------------
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>forward_1103
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------------------------------------------TGCCCACCTGAAGAGGAAATC-----------------
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>reverse_2708
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-------------------------------------------------------------------CTGAAACACAGCA
GCATCGA-------------------------------------------------------------------------
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