>input_sequence_83383
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--------------------------------------------------ATGGACCGCAGCAATGGCAACGGC------
GGCGTGAGGAACGGCGGGAGGCTGGAGCTGCAGCTTAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGGCCATGACGA
CAGCGGCTCGTCGTCGCCGAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGAAGCAAGTCGCCGATGGTGATCGGGGCCT
GCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGACTACCCCACCTGCATCAACTGCAAGCAGCCCTGCCTCGTG
GACCTGCTGCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAAGTGA-----
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>chr5A_1_TraesCS5A01G126400
CCGAGTCAACCCTACAATGCTATAAATTCTGCTGTCAGGTCATACCGGCGGGAGTAAACTCTCCTTCGTAAGT----ACT
CACTCCTGTAAGAATTGAAATAAAGACGCAATAGGGTTATA---------------------------------------
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---------------AAAGCTTGCTCGTCTTTGGGTGAGATGTCATTTCACATCACAGAGGAATTCAATGGACTGCAGGA
TTCCATTGAAGAGCAAAGGGCATTGAGTATACATGGGTACGGCCAAGCCGGCCTGGCCGCGCGGTTAAAGACACCATTTA
CCTAAAGTGGCTCATCTCCTATTTAAGATCCATTTACTCACATAACCAGTGGCACATTGATGCACTATACTTATTTTCGC
TGGATGGAACCCTTCATGCAGCTGCTGCTCATCAGTAAAGGGCGTTCAAGATGTTGACACTGCGCACACAGCTA-TGCCA
ATAGCATGGTGTTGGCAGCGTCGCCATGAATACACCCAGAGGGCAACCACGAAAATAAGAGTAAATTTGGCCTCACAAAT
GTGTCTAGCTTCCCACCTTATAGATTTCCCCTGTTTTCCTGTAGTACTA----AGGTTGGTATAAGCTCATAAAATATGA
TTTTGGAGTATGTATTTTTCAAAAAC--TAATTAACTTTATGATGTGCAAGATCACAACAAGAGAGTAGGGTTGGAGGGA
TGTGGAAGGAAGTAAAGAGAGGAAGAGGACGGAGGGACCTTGCTGTTGCATTAATAGCAAGTAAATAGAAGCATTGACCT
CTCCTCCTATGCTTGGAACCCCTCCTATATAAAGACCTTCGGACCTTTCAAAGTCCTCAACCAAATACACATCGCAGCTA
--GCTCAGCTCTTCCTCTCCTCTCCTCTTCACGGGATTCAGGTAGCAACTCTGCTTTTCCTTGTGTTCTTCCTCATGTAG
GAGTATGTTATGCCGCAGTTCT----TCTGTTCTGCACACCTGAAGAGGAAATTT-------------------TGTTTT
GTTATCTAATATGCATATTCTTGTTTGTGCAGTGTGATTGTCTGTGAGTCATGGACCGCAGCAATGGCAACGGC------
GGCGTGAGGAACGGCGGGAGGCTGGAGCTGCAGCTTAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGGCCATGACGA
CAGCGGCTCGTCGTCGCCGAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGAAGCAAGTCGCCGATGGTGATCGGGGCCT
GCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGACTACCCCACCTGCATCAACTGCAAGCAGCCCTGCCTCGTG
GACCTGCTGCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAAGTGAAGAAA
AATCAACGGTGGTGCGGGCGCGTGCCCGTCCAGTGGATGCTCACACGGATGGTTAGCTCGATCAGGCGATGCGCGAATCT
TGGGGCTGGAGGAGGGAGTGACCGCCGTCGGATCATCCACTGGACAGGGT-GGGTCTCTGAGTAGCAGGCTACTTAGCTT
AAGTAGTTACTTTCCTTTGTGTTGCTGGGTTGCAATGGGTTGGTCAGTTTAATTAGCGTTATTGCTAGTTTCCGATTGGT
GTTGTAGTAGCAGTGGTCTTCTAAGTTTGTAATCCCCTGTTTGCTGAAGAAATGCAAGACCTAACTAACGGTATGCAGCA
GCTAAGCTAGCGATGGTTGTCTCCAAATAATTTGTACTA---GTCAACTGTGTTTTCACCATGTTTTTCTGTTTTTTCTT
CAAGGACTTAATTTTTTTT-------------------------------------------------------------
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---------------------------------------------------------------AGGGATTCAAGGGCTTA
ATTAGGTAGGGTGCGAGTAATATATCGATGCAAGCGGCGGCCCACTTATCCCGC----GAAACGCATCAATTACTACCTG
CCAAGTTAACACTAATTTTGTACTGCCGTGA-------------------------------------------------
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-----------------------------------------------TATTGTCCGTGAAACCCGTCCCCGCTTTGGATC
CTGAGGTGCGAGGGTTCGAACCAAGTATTTGAGCCTTGCATGCGTACGATTTGCATAGCTCTGTTCGTCGTCGAGTAAT-
CTTCAGGTGTCGTGAGCACTATCCGATCGAGAACCTACGGCTCAGATCGACTGTCGGGTGAGGCATGGACTGGCGAAACA
CAGCAGCATCGCCCTCTGCAAAGTACAGGCGCCGGTGCTTCACTGCAGGGGCTGACACACACACTGGAAGGAAGTAAAAG
CAGGATAAACAAGGGCATCATTACACAATTATATAGTACGACGGACAAATCTCTGGGCGCGGGAGCTGCACTTCAAGTGC
GTCTGCACGGAGGTCGGATGCATGTCTCGGAAGAAATAGATCCGCTGCCTTGCACAAGC-AACCCATGGCTTTCTCAAGG
------CACGGCCTGATCAAAATGGAGATTA
>chr5D_1
CCGAGTCAACCCTACAATGCTATAAATTCTGCTGTCAGGTCATACCGGCGGGAGTAAACTCTCCTTCGTAAGT----ACT
C----CTGTAAGAATTGAAATAAAGACGCAATAGGGTTATA---------------------------------------
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---------------AAAGCTTGCTCGTGTTTGGGTGAGATGTCATTTCACATCACAGAGGAATTCAATGGACTGCAGGA
TTCCATTGAGTATACA----------------ATGGGTACGGCCAAGCCGGCCTCGCCGCTCGGTTAAAGACACCATTTA
CGTAAAGTGGCGCATCTCCTATTTAAGATCCATTTACTCACATAACCAGTGGCACATTGATGCACTATACTTATTTTCGC
TGGATGGAACCCTTCATGCAGCTGCTGCGCATCAGTAAAGGGCGTTCAAGATGTTGACACTGCGCACACAGCTATTGCCA
ATAGCATGGTGTTGGCAGCGTCGCCATGAATACACCCAGAGGGCGACCACGAAAATAAGAGTAAATTTGGCCTCACAAAT
GTGTCTAGTTTTCCACCTTATAGATTTCTCCTGTTTTCCTGTAGTACGTACTGAGGTTGGTATAAGCTCATAAAATATGA
TTTTGGAGTATGTATTTTTCAAAAAC--TAATTAACTTTATGATGTGCAAGATCACAAGAAGAGAGTAGGGTTGGAGGGA
TGTGGAAGGAAGTGAAGAGAGGAAGAGGACGGAGGGTCCTTGCTGTTGCATTAATAGCAAGTAAAGAGAAGCATTGACCT
CTCCTCCTATGCTTGGAACCCCTCCTATATAAAGACCTTCGGGCCTTTCAAAGTCCTCAACCAAATACACATCGCAGCAG
TTGCTCAACTCTTTCTCTCCTCTCCTCTTCACGGGATTCAGGTAGCAACTCTGCTTTTCCTTGTGTTCTTCCTCACGTAG
GAGTATGTTATGCAGCAGTGCC----TCTGTTCTGCCCACCTGAAGAGGAAATCT-------------------TGTTTT
GTTATCTAATATGCATATTCTTGTTTGTGCAGTGTGATTGTCTGTGAGTCATGGACCGCAGCAATGGCAACGGC------
GGCGTGAGGAACGGCGGGAGGCTGGAGCTGCAGCTGAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGGCCATGACGA
CAGCGGGTCGTCGTCGCCGAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGTAGCAAGTCGCCGATGGTGATCGGGGCCT
GCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGATTACCCCACCTGCATCAACTGCAAGCAGCCCTGCCTCGTG
GACCTGCTCCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAAGTGAAGAAA
AATCAACGGTGGTGCGGGCGCGTGCCTGTCCAGTGGATGCTCACACGGATGGTTAGCTCGATCAGGCGATGCGGGAATCT
TGAGGCTGGAGGAGTGAGTGACCGCCGTCGGATCATCCACTGGACAGGGTTGGGTCTCTGAGTAGCAGGCTACTGAGCTT
AAGTAGTTACTTTCCTTTGTGTTGCTGGGTTG----------GTCAGTTTAATTAGCGTTATGGCAAGTTTCCGATTGGT
GTTGTGGTAGCAGTGGTCTTCTAAGTTTGTAATCCCCTGTTTGCTGAAGAAATGCAAGACCTAACTAACGGTATGCAGCA
GCTAAGCTAGCGATGGTTGTTTCCAATAATTTG----TA---GTCAACTGTGCTTCCTCCATGTTTTTCTGGTTTTTGTT
CAATGATGA-----------------------------------------------------------------------
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----------------------------------------------------------------------------CTTA
GTTAGGTAG-----------------GATGCAAGCGGCGGCCCGCTTATCCCGCCCGCGAAACGCATCAATTACTAGCTG
CCAAGTTAACACTAATTTTGTAGTA-------------------------------------------------------
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-----------------------------------------------------CCGCGAAACCCGTCGCCGCTT-GCATC
CTGAGGTGCGAGGGTTCGAACCAAGTATTTGAGCCTTGCTTGCATACGATTTGCATAGCTCTGTTCGTCGTCCAGTAATA
CTTCAGGTGTCGTGAGCACTATCCGATCGAGAACCTACGGCTCAGATCGACTGTCGGACTGCT-----------GAAACA
CAGCAGCATCGATCTCTGCAAAGTACAGGTACCGGTGC-TCACTGCAGGGACTGACACACAGACTGGAAGAAATTAATT-
---GATAAACAAGGGCATCATTACACAATTATATAGTACGACGGGCAAATCTCTGGGCGCGGGAGCTGCACTTCAAGTGC
GTCTGCACGGAGGTCGGATGCATGTCTCGGAAGAAATAGATCCGCTGCCTTGCACAAGCAAACCCATGGCTTTCTCAAGG
------CACGGCCTGATCAAAAGGGAGATTA
>chr5B_1
CCGAGTCAACCCTACAATGCTATAAATTCTGCTGTCAGGTCATACCGGCGGGAGTAAACTCTCCTTCGTAAGTACTTACT
C----CTGTAAGAATTGAAATAAAGACGCAATAGGGTTATAAAAGCGGAAGCAGCTCCCCTAACGTACGTTACACGCCGG
TTGGGGACACTAGCATGTGGGGTTGATTCACAGCGAGCCCACCTGTCAATCGCCGAACGGCACCCTGCCGCACGGCAGAG
GATCCGCGTCCTATAAAAGCTTGCTCGTGTTTGGGTGAGATGTCATTTCACATCAAAGAGGAATTCAATGGACTGCAGGA
TTTCATTGAAGAGCAAAGGGCATTGAGTATACATGGGTACGGCCAAGCCGGCCTCGCCGCTCGGTTAAAGACACCATTTA
CCTAAAGTGGCGCATCTCCTATTTAAGATCCATTTACTCACATAACCAGTGGCACATTGATGGACTATACTTATTTTCGC
TGGATGGAACCCTTCATGCAGCTGCTGCGCATCAGTAAAGGGCGTTCAAGATGTTGACACTGCGCGCACAGCTATTGCCA
ATAGCATGGTGTTGGCAGCG-CGCCATGAATACACCCGGAGGGCAACCACGAAAATAAGAGTAGATTTGACCTCACAAAT
GTGTCTAGCTTCCCAACGTATAGATCTCCCCTGTTTTCCTGTATTACTA----AGGTTGGTATAAGCTCATAAAATATGA
TTTTGGAGTATGTATTTTTCAAAAACCTTAATTAACTTTATGATGTGCAAGATCACAAGAAGAGAGTAGGGTTGGAGGGA
TGTGAAAGGAAGTGAAGAGAGGAAGAGGACGGAGGGTCCTTGCTGTTGCATTAATAGCAAGTAAAGAGAAGCATTGACCT
CTCCTCCTATGCTTGGAACCCCCCCTATATAAAGACCTCTGGACCTTTCAAAGTCCTCAACCAAATACACATCGCAGCAG
TTGCTCAACTCTTTCTCTCCTCT-----TCACGGGATTCAGGTAGCAACTCTGCTTTTCCTTGTGTTCTTCCCCAT----
--GTATGTTATGCAGCAGTACTTCTATATATTCTGCTCGTCTGAAGAAGAAATATATTCTGATATAATTAATCCTGTTTC
GTTATCTAATATGCATATTCTTGTTTGTGCAGTGTGATTGTCTGTGAGTCATGGACCGCAGCAATGGCAACGGCGGCGCC
GGCGTGAGGAACGGGGCGAGGCTGGAGCTGCAGCTGAACCTGTCGCCGCCGGTGGGGATGGAGGTGGACGGCCATAACGA
CAGCGGGTCGTCGTCGCCAAGCTCCTGCGTGTCGTCAGACGGCAGCCCTGGAAGCAAGTCGCCGATGGTGATCGGGGCCT
GCACCCGGTGCCTCATGTACTGCATGGTGGCCAAGAAGGATTACCCCACCTGCATCAACTGCAAGCAGCCCTGCCTCGTG
GACCTGCTGCAGAACGGCGGCGCCGGCGCGGGCGCCTCCGGGGACGGCGACAAGAAGCGCGGCAAGCGCAAGTGAAGAAA
TATCAACGG---TGCGGGCGCGTGCCCGTCCAGTGGATGCTCACACGGATGGTTAGCTCGATCAGGCGATGCGCGAATTT
TGAGGCTGGAGGAGTGAGTGACCGCCGTCGGATCATCCACTGGACAGGGTTGGATCTCTGAGTAGCAGGCTACTTAGCTT
AAGTAGTTACTTTCCTTTGTGTTGCTGGGTTGCAGTGGGTTGGTCAGTTTAATTAGCGCTATGGCTAGTTTCCGATTGGT
GTTGTAGTAGCAGTGGTCTTCTAAGTTTGTAATCCCCTGTTTGCTGAAGAAATGCAAGGCCTAACTAACGGTATGCAGCA
GCTAAGCTAGCGATGGTTGTCTCCAATAATTTG----TACTAGTCAACTGTGTTTTCACCATGTTTTTCTGGTTTTTCTT
CAAGGACTTCATTAGGTTTTTCTCTCTGAGGGATTCGGAGGGAAATTAGGTTGGCCACCAACTTCGCCTGCCTTTCTATC
CGAGTTCTTCCCTCTTGATGCTTTTGAACGACTCCTAAATTTCACAAAATCCTTTTTTTCTTATTTGAAATCCAAATCAA
AATGCCTCAACTTGATAAATTAACTTATTTCTCACAATTCTTCTGGTTAGGTTTTTCTCTATGAGGGATTCAAGGGCTTA
ATTAGGTAGGGCGCG--------------------GGCGGCCCGCTTATCCCGC----GAAAAGCATCAATTACTAGCTG
CCAAGTTAACACAAATTTTGTAGTACTAGTACTACTGTGATACTCCCTCCATTCCACAATGTAGTGCCTATAGATTTTTG
TGAAAGTCAAACTTTGCCAACTTTGACCAAGTGTATAGAGAAAACTATCTACATCTACAATATCAAACATATACATCCTC
AAAATATAACTCGCGATGTATCCAGTGATGTCCATTTGGTATTCTAGATGTACCTACTTTTCTTCAAAGTTTGTAATGTT
TGACTTTTGTAAAAATCTATAGGCACTACATTATGGAACGGAGGGAGTATTGTCCGGGAAACCCGGCCCCGCTTTGCATC
CTCAGGTGCGAGGGTTCGAACCAAGTATTTGAGCCATGCATGCATACGATTTGCATATCTCTGTTC-TCGTCGAGTAATA
CTTCAGGTGTGGTGAGCACTATCCGATCGAGAACCTACGGCCCAGATCGACTGTCGGGTGAGGCATGGACTGTCGATACA
CAGCAGCATCGATCTCTGCAAAGTACAGGTACCGGT---------CAGGGGCTGACACACACACTGGAAGGAAGTAAAAG
CTGGATAAACAAGGGCATCATTACACAATTATATAGCACGACGGGCAAATCTCTGGGCGCGGGAGCTGCACTTCAAGTGC
GTCTGCACGGAGGTCGGATGCATGTCTCGGAAGAAATAGATCCGCTGCCTTACACAAGC-AACCCATGGCTTTCTCAAGG
GCAAGGCACGGCTTGATCAAAAGGGAGATTA
>SNPs
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-SSSS---------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
------------------------------------------------------S-----S-------------------
-----------S--------------------------------------------------------------------
----------------------------S---------------------------------------------------
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----------------------------------------------------------S---------------------
-------------S----------------------S----------------------------S--------------
------------------------------------------------------------------------------SS
-------S-----S------------------------------------------------------------------
-------------S-----S----------------S----------------S--------------------------
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-----------------------------------S--------------------------------------------
------S-------------------------------------------------------------------------
----------------------------------------S---------------------------------------
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--S-----------S-----------------------------------------------------------------
----------------------------------S---------------------------S-----------------
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--------------------------SS-S--SSSSS----------------------------------S--------
---------S---SSS----------------------------------------------------------------
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-----------S---SSSSSSSSSSS-----------------S--------------------------------S---
----------------------S-S-SSSS--------------------------------------------------
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--------------------------------------------------------S-------------------S---
-------------------------------------------S------------------------------------
------------------------------------------------------------------------S-------
-----------SS----------------SS-------S-----------------------------------------
-S------------------------------------------S-----------------------------------
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----------------------S--------
>forward_968
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--------------------------------------------------------------------ACACATCGCAGC
TAGCTCAG------------------------------------------------------------------------
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>reverse_2181
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--------------------TATATCGATGCAAGCGGCGG----------------------------------------
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