>input_sequence_83369
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------------------------------------------------------------------ATGGACGCGATGGA
GTCCTCGTCGCCCTA------------CTCG---------CTGCGCCAAAAGCTGCGGACCACCGTCTGCGGCTGCTTCG
GATCACCGTCGTCGCCGGTCAGCAGCGCGGGGAGGCCGCACACCGGCGGCGGCAG----GGCCAGGTGGAGGCGGCGCAT
GGCGGCCACGGGGGTGTTCCGGTACGACCCGCTGAGCTACGCGCTCAACTTCGACAACAGCGGTAGTGACGGCGGCGAGC
GAGACACTAAGGACACCGC------CTTCCACTTCCAGTACAGGAACTTCAGCTCGCGCCTGCCGCCCTTGCCGACACCG
ACTGCCGGGCGTGCCACCACGGTCGCCATCGCCTGA--------------------------------------------
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>chr4A_1_TraesCS4A01G384000
GAGCTGAGACCAAATGCACGTTAACCGGCACCTGCAGCTTCAAATAGGACTTGCCCTCGGGAGGCAACCGCGGCTGGAGA
TGGCTCTTATCCCAGCCGCCTCACTCGACGGATTGATCACGGGCAACTGGGATAGTAGCACTAGCGCTCAAGCTGAGCTT
AATATATTGACCCTTTTTTCCTGGGCTGATCAGATCAGATCACTCTACGGACGTAAACTAATCAATTACTGGCGTGACGC
CACCGCCCCACATGAGCTGAAACCAATTTCTTCGAAAAAAATGAGTTGAAACCAAACCACACGGACTAGGAGACGTGCAA
CGCATGGAGCAACAAGCAGTTTTGCGGCAAACCATACCAGCTGCGTGTTTGCGGATGCCGGACGTTTCTTCTACTTTGCC
GATCGAGTTGCACGTTTTGAACAAGAGTCGCCGCCGCCATCGCGGCAACGGAAAGCAGTCTCTCCGTGGATCGCCGCATC
CACCGATCGATCTCGTCCGTCCGTTGGTCGCCGCGGGCCGTACGACACGGGACCTTTCGCCTTCGCCGTGGTGCACCGAG
GTATAGCATCCGATTCGTCCGGCGTTCACATCTGTTGGTTCGTTCTGCACGCATTTCTCCCATACAAAAAACACGGAGGC
CCTTTAATTTTCTCCCGTCCTTTCGACCCGCCGTGTGCTTTCTTCTTCTACCATGTTCTGTCTGATGAGAAGGCGGTACG
TCGCTACGGA-------GATACTGGCTGCTTGCTTTGCTTCCCCGCCGTCGCGTCGTGTGCGCGTCTCTTATACGCCCTT
CACTCCGTCCCCGGCCCCCTGTCTGTCACTCCTTATCTGTCTTTTCCCGCCCTTCCGATTTAGT-------------CCC
GCCTGCCTTCTCCATCCACAC-----CCACACCCAGCCCAGCAGCAGAGCACACACCTTCTCTCTCACA-CACACCCCTC
TGAGCTCGACCAACCACATCATCTCCAACTCAACAAGTACTACAACGAGAACGACAGGCAGTCTCCATGGACGCGATGGA
GTCCTCGTCGCCCTA------------CTCG---------CTGCGCCAAAAGCTGCGGACCACCGTCTGCGGCTGCTTCG
GATCACCGTCGTCGCCGGTCAGCAGCGCGGGGAGGCCGCACACCGGCGGCGGCAG----GGCCAGGTGGAGGCGGCGCAT
GGCGGCCACGGGGGTGTTCCGGTACGACCCGCTGAGCTACGCGCTCAACTTCGACAACAGCGGTAGTGACGGCGGCGAGC
GAGACACTAAGGACACCGCCTTCCACTTCC------AGTACAGGAACTTCAGCTCGCGCCTGCCGCCCTTGCCGACACCG
ACTGCCGGGCGTGCCACCACGGTCGCCATCGCCTGAACTGAATCATAGTAGC----AACCGTCGTTTATT-----ACTTC
TGTAGGTTCTGTCTCTCTGATTTCGTAAGCGATTCAGTAG-----------CCA--GTAGCAGCATACGTG-GTACGTAT
AGGATTTTTTTGGGGTCAGTTTACCAGTGCAATATCCCGGTTGTTCCCCAT-GGAACC------------CAAGTACTTG
TACAAGAATAATAAG---CATTTGAACAATGGGTTTGTCTTCTGCTAGATGAACTGTGAGGGAAATTTACATCTCCTCCC
CCTTTTCTCTTTGAAAGTTTGTTTGGTAGCGTGGTTGGCAGGGCGTCCGCTGC------------ATGGGTGGAGGGGGG
CAGTGCAAACAGAAAAGAAATTCCGGGTTTTACAATTTGGCGGCTACATGGGAACC---TTTTTTTTTCTAATTATTTGC
T--------------------GAGTTGTTCTTCTGCTACTCCCATGAAGTCTGAAGCTACCCGCGTGTTGACGACTACGT
CAAGTGCAGTCGAATGAGTACACCCTCATTGCACCGGCGACCACCTATAGGGGTGTCGATCGAGGATGTTGGGACCGGCC
ACGACAGATGCTGTAACTATCGGAGAGGGAATGCTGTGGTGGGTGGGCTGCACTGCAATGGCGACGATCTCGTGCTCGAT
CGCCTGAAGCGGGGACAACGGGTGCTACAAGGGGCAACGACGAGTGCTACGAAAAGGATATAGTGGTGATGCGAGCGGCG
AGCA---------TGCTGCCTCCCGTGGCAGCCGGTGTTGCTGAGGTCGAAGACCAACGCTCGGTTGCGATGCGGGCCCG
CGTCCCCCTTTTCTTTTCCCAGTGTGGAGCGCACATGCAGCAGAGAGGCCCAGTCGTGCGTGTGAAGGGGTTGACTTGAT
CCAACGACTCTAATTGCCGGAATCCAAGGGCTCGGGAGGTGATCGATCTAGAATCTAGTCGGTCGACC-GGCGCAAGAGT
GCTACCCCT----AATATCGCGATGCAA----CGGCCGAAGGCGCGAACGGACGCAGCTGGCGCCACGCCTCAGCCCACC
GCCACCAC
>chr7D_670
GCCGTGTG------------------------------------------------------------------------
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----------------------------------------TCTTCTTCTACCATGTTCTGTCTGATGAGAAGGCGGTACG
TCCGCGTGCGCTACGGCGATACTGGCTGCTTGCTTTGCTTCCCCGCCGTCGCGTCGTGTGCGCGTCTCTTATACGCCCTT
CGCTCTGTCGCCGGCCC-----CTGTCACTCCTTATCCGTCTTTTCCCGCCATCCCTACCTATTTAGCCCGCCTACCCCG
GCCTGCCTTCTCCACCCACACCCACACCACACCCAGCCCAGCAGCAGAGCACACTCTCAGTCAGTCAGTTCACACACCTC
AGAACTCGACCAAGCACAT----------------------------------------------CATGGACGCGGTGGA
GTCGTCGTCGTCCCCGTACTCGCCGCCCTCG---------TTGCGCCACAAGCTTAGGACCACTGTGTGCGGCTGCTTTG
GCTCACCGTCGTTGCCGGGCAGCGGCGCGGAGAGGCCACACACCGGCAGCGTCAGGGCCGGCCAGGTGGAGGCGACGCGT
GGCGGCCACGGGGGAGTTCAGGTACGACCCGCTCAGCTACGCGCTCAACTTG---------------GACGACGGCGAGC
GTGACACCGAGGACGCCGC------CTTTC------TGTACCGGAACTTCAACTCGCGCCTGCCGCCCTCGCCGGTGCCA
GCGGCCCAGCGTCTCACCACGGTCACCATCGCCTGAACTGAATCATAGTAGC----AACCGTCGTTTTTT-----ACTTC
TGTAGGTTTTGTCTCTCTGATTTTGTAAGCCATTCAGGAGGTACCATACTACAGCTGTAGCAGCTAGCATACGTGCGTAT
AGGATTTATTTTT--TCAGTTTACAAGT-CAATGTCCCGGTTGTTCGCCATTGTAACC------------GAAGTACATG
TACAAGAAGAAGAAGAAGCATTTGAACAATGGGTTTGTCTTGTGCTAGATGAACTGTGAACGAAATGTGGCTCTCCTCCC
CCTTTTCTCTTTGAAAGTTTGTTTGGTAGCG--------------TCCGCTGCGCGGTTGGAAGGATGGGTGGAGGGGGG
CAGTGCAAACTGGAAAGAAATTCCCGGTTTTGCAATTTGGCGGCTACTAGGGAACG---TTTTTTTTT-------TTTGC
T--------------------GAGTTGTACTTCTGATACTCCCATGAAGTCTGAAGCTACCCGCTTGTTGACAGCTACGT
CAAGTGCAGTCGAATGAGTACACCCTCATCGTCCCGGCGACCACCTA--GGGGTGTCGATCGAGGATGTTGGGACCGGCC
ACGACAGATGCTACGACCGTCGGAGAGGGAATGCTGCGGT----GGGCTGCACTGCAATGGCAACGACCTCGCGCTCGAT
CGCCGGAAGCGGGGACGCCCGGTGCTACGAGGGGCGACGACGAGTTCTGCGAGAAGGATCTAGTGGTGATGCGAGCAGCG
AGCGGGTTCTCTGTGCCGGCTCCCGGTGCAGCCGGCGTTGCTGAGGTAGAAGACCAACGCTCGGTTGCGATGCGGGGCGG
TGTCCCCCTTTTCTTTTCCCAGTGTGGAGTGCGCGTGCAGCAGAGAGCACGAGTCGTGCGTGTGAAGGGGTTGACTTGAT
CCAACGACTCTAGTTGCGCAAATCCGAGGGCTCGGGAGGTGACCGATCTAGAATCCGGCCGGTCGACCGGGCGCAAGAGT
GCTGCCCCTCTGCAATATCGTGATGCAA----CGGCCGAAGGCGCGAACGGACGCAGCTGGCGCCACGCCAGAGCCCACC
ACCACCAC
>chr7D_925
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----------------------------------------------------------------------CACACACCTC
ACAACTCGACCAACCACATCATCTCCAACTCCACAAGTACAAGAGCAGGG---------AGTCCCCATGGACGCGGTGGA
GTCCTCGTCGCCCTA------------CTCGCCTCCCGAGCTGCGCCACAAGCTGCGGACCACCGTATGCGGCTGCTTCG
GCTCGCCTTCTTCACCGGTCACCGGCGCGGGGAGGCCGCACACCGGTGGCGGCAGGGC----CAGGAGGAGGCGATGCGT
GGCAGCCATGGGGGAGTTCAGGTACGACCCGCTCAGCTATGCGCTCAACTTC---------------GACGAGGGCGGCA
G------CGACGACGACGC------CTTCC------GGTACAGGAACTTCAACTCGCGACTTCCGCCCTTGCCGACACCG
GCTGCCCGGCGTCTCACCACGGTCGCCATCGCCTGAACTGAATCATAGTAGCTAGCAACCGTCGTTTTTT-----ACTTG
TGTAGGTTCTGTCTCTCTGATTTTGTAAGCAATTCAGGAGGTACCATCCTACCA--GTAGCAGCTACCATACGTGCGTAA
ATGATTTTTTTT--GTCAGTTTACAAGT-CAATGTCCCGGTTGTTCGCCATTGTAACT------------GAAGTAAATG
TACAAGAAGAAGAAG---CATTTGAACAATGGGGTTGTCTTCTGCTAGATGAACTGTGAAGGAAATTTACATCTCCTCCC
CTTTTTCTCTTTGAATGTTTGTTTGGTAGCGTGGTTGGCAGTGCGTCCGCTGCGCGGTTGCAAGGGTGGGTGGAGGGGGG
CAGTGCAAACTGGAAAGAAATTCCGGGTTTTGCAATTTGGTGGCTACTAGGGAACGTTTTTTTTTTTT-------TTTGC
T--------------------GAGTTGTACTTCTGATACTCCCATGAAGTCTGAAGCTACCCGCTTGTTGACAACTACGT
CAAGTGCAGTCGAATGAGTACACGCTCATCGTCCC----------------GGTGTCGATCGAGGATGTTGGGACTGGCC
ACGACAGATGCTACGACCATCGGAGAAGGAATGCTGCGGT----GGGCTGCATTGCAATGGCGACGACCTCGTGCTCGAT
CGCCGGAAGCGGGGACAACGGGTGCTACAAGGGGCGACAACGAGTGCTGCGAGGAGGATCTAGTGGTGATGCGAGCGGCG
AGCGGGTTCTGCGTGCCGCCTCCCGTGGCAGCCGGCGTTGCTGAGGTCGAAGACCAACACTCGGTTGGGATGCGGGCCGG
CGTCCCCCTTTTCTTTTCCCAGTGTGGAGTGCGCGTGCAGCAGAGAGCACGAGTCGTGCGTGTGAAGGGGTTAACTTGAT
CCAACGACTCTAGTTGTGCGAATCCAAGGGCTCAGGAGGTGACCGATCTGGAATCCAGCCGATCGACC-GGCGCAAGAGT
GCTGCCCCT----AATATCGGGATGCAACGGCCGGCCGAAGGCCCGAACGGACGCAGCTGGCGCCACGCCTGAGCCCACC
ACCACCAC
>chr7B_1255
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-------------------------CTTCC------GGCACATGAACTTCAACTCGCGCCTTCCGCCCTCGCCGACACCG
GCTGCCCGGCGTCTCGCCACGGCCGCCATCGCCTGAACTGAATCGTAGTAGC----AACCGTCGTTTTCTTTCCCACTTG
TGTAGGTTCTGTCTCTCTGATTTTGTAAGCGATTCAGGAGGTACCATACTACCA--GTAGCAGCTAGCATACGTGCGTAT
TGGATTTTTTTTCCCCCAGTTTACGAGT-CAATGTCCCGGTTGTTCGCCATTGTAACCCAAGTACATGTACAACAACATG
AAGAAGAAGCAGCAG---CATTTGAACAATGGGTTCGTCTTCTGCTAGATGAACTGTGAAGGAAATTTACATCTCCTCCC
CCTTTTCTCTTCGATAGTTTGTTTGGTAGCGTGGTTGGCCAGGCGTGCGCTGCGCGGTTGGAAGGATGGGTGGAGGGGGG
CAGTGCAAACTGGAAAGAAATTCCGGGTTTTGCAATTTGGTGGCTACTAGGGAACGTTTTTTTTTTTT-------TTTTA
ATCTTTTTAGTTTTGCTGATCGAGTTGTACTTCTGCTACTCCCATGAAGTCTGAAGCTACCCGC----------------
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>SNPs
-SSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
--SSSSS-SS----------------------------------------------------------------------
-S---S---S-------SSSSS---------------S-------------S-S--S-SS--S----------------S
--------------S---------------------------------------S-SSSS--SS---SS------S----
S--S---------------------------S--------S-S-S-SS-SSSSSSSSSS----S-----------S----
------------------------------------------------S-----------------S-------------
-S---------------------S--------------------------------------------------S---S-
--------------S----S-------------S------------------SSSSSSSSSSSSSSS----S--------
-S-----SS-----S----SSSSSS-----------S--------------S----------------------------
S-----S-----SS-----------------------------------------------------S------------
-----------------------S-------------S--------------------------SSS-S-S---S-----
-----------SSS----------S---S----S------------S------S-----------------------S--
--------S--S-----------------------------------------------S--------------------
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----------S-S------------------S---------------SS------S------------SSSSSSS-----
----------------------------S-----------------------------------S-------S-------
-----------------------------S-SS--------------SS-------------------------------
------------SSS--S------------------S---SSSS-----------------------S------------
----S------------------------------S------------S---S------S--------------------
---S------------S------------------S------------------------------------------S-
-----------------------------S--S-S------------SS-S-----------------------------
------------S----SS-----------------------S------------S--S---------------------
---S----------------S--------------------------------------------------S--------
S-------
>forward_943
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-------------------------------------------GCAGAGCACACACCTTCTCT-----------------
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>reverse_1968
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-----------------------------------------------TAGGGGTGTCGATCGAGGAT-------------
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