>input_sequence_83365
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-------------------------------ATGGCGGAGTCCTTAGCTCTCAAGTTTGGCCTAAATTTAGCGCAAAGGG
CGGGTTGTAATCACCTAATCATCAACTCTGACAATTTGGAGGTGATTGAGACCATGCAGGATGGAGGACAGTTAGCGGGA
GCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGACTAAATTCGAACATTGTAATAGAGA
GGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGATTTTTTTCAACTTCGGATTGGTTTGAGGAGCCTATTAGTG
AAATTGTAATGTTTCTCACAAACAATGTATTGGTTATTGCTAATGAATAA------------------------------
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>chr4A_1_TraesCS4A01G137400
ATGGCTGAATGTTTCCTCTTATGTGTAGGTGTAGGTGGTCATTTCTATTCTGTAGATTGGAAACGTACAGAAGGAGAGGA
-------------------------------------GCCCCTTGCTCGGGTGAGAGAGATGGCCCAGGTCGGCAAGGCC
CATGAGAAAGGAGGGGAG----------------------GAGAAAAAAATAGATGGGCTAAGCCGATGCGACTTAGACA
GGAAAAA---AACAGTGACTCAACCCAGGGAAGAGAAGGCAAGATGTTGAACAAATGGAATTTCGCCTAGAGTTTGAGAC
AGGAAAAACAGATTGATTTTCCTCTTGGGAAAATTTAGAGAAGG-AAAGAAGCTCAAACAAATATCAAACGGATTCACAA
A-------AACCAAAGTAAATTCAAAGGTGCATATTTAAATATGCCAAAGAAGAGAAAATAAAGCCCAACTAAAAGAAAA
GAAGAAAACTCAAATTTTAATTTAGGTTCACATTAGTTCAATTTAAATCCATTAAAT-TATAAAATTCCAATTTAAGCTT
GGTTAACAAATAAAACAAATGAAATTTTCTTGCCCTGATTTTTGAGAAAACTTTTTCTTAAACATTCCGAGAATCGGGAT
GTTACAGACTTGTCCTAAAATTACTTTGCAATACCTTGGAATGTCACTAAAAGTTTGGGGCAATTTGTTTCCGCAGAATT
TATGGTGGAAATTAGATGACATAATTGGGGCTGTTTGGTCCAGTTTTAAATAGGCCAAGGACATTTTATTTATTTAAACA
ATGTTGGTATATCCATGACAAATAGTTAGTGAATATCTGCGACCTAACGAACATTTTTAATTTATTGTTTGAAGAAATCA
TAAGTTGACTTGTTATTTGAATTTGAATTTGTCCTAAATTTTAATCAAGTGAGAATTGGCTTAGTAAAAGGGTGATGAAC
TGGCATCATTAGGGTGAGGTTACTGTAGCACGAGTCTCGGGGTGTTACAACGACAAAGGTAGATTTATTGCAGGAGGGAA
AGGAAAGATAGACTACTGCGCGGATATTCTCATGGCGGAGTCCTTAGCTCTCAAGTTTGGCCTAAATTTAGCGCAAAGGG
CGGGTTGTAATCACCTAATCATCAACTCTGACAATTTGGAGGTGATTGAGACCATGCAGGATGGAGGACAGTTAGCGGGA
GCGGCGGCGGCAATCTTCGATGACTGCTATCACTATGCTTGTGATTTTATCATGACTAAATTCGAACATTGTAATAGAGA
GGCAAATAAAGTAGCACATGAACTTGCTAGATTAGCTAGATTTTTTTCAACTTCGGATTGGTTTGAGGAGCCTATTAGTG
AAATTGTAATGTTTCTCACAAACAATGTATTGGTTATTGCTAATGAATAAAATTTCATTTTATTTCAAAAAAAAAGCTTA
TGAGCGGCTACATTCCCAGAACGTTGAACCCATGACACCTTTGAATCCTCCAGCGTATTGAGAATCCTCTTTATATCCTG
CACCCAAGGTCCTACAACGGACAAATTCCTTTTCGGACTATTAAGCATATGTACCACAACCTGACAGTCCAGTTCGACAT
GAGCTCGCTGAACCTGAAGATCAATCGCCACCTGAACTCCTCGTCTGCGCGCTAGTACTTCTGCCATCTCAGGGTCAATA
ATGTTTGGTAAAAACTGGCAAAGACCATCCCTGAACGCCCCATTGTGATCCTGGAAGATCGCTCCTTATCCTCCTTTATC
TCCATG--TTTGGAGACCACACCGTCGGAGTTGATCTTTACCCATCCATATTCAGGAGGCTCCCAACGATGGATGATCGT
TGGCTCCGATTGTAGCGCCCTCGTCTCGTGTGCTAGTTTCCAATGCATGAGCTGCACCTGAACTGTGCCTACTATTTCAT
GTGGCTGGGAAATCTTCTTGCTTTCTCTTGCATCATTTATCGCGAGCCATAGCCCATATGTCGCCTGTAGCAGAACTTCC
TTTTCATCTCCCGAGCCCCCGGCGAACCAGCTCAGCAGCCAGGATGCAAGCTCGTGTTGAGAGGAAATATGCAGTGGTGG
GGATTGTTGGGGAACGCAGTAATTTCAAAATTTTCCTACGCACACACAAGATCCATCTAGGTGATGCATAGCAACGAGAG
GGGAGAGTGATGTCCACGTACCCTCGTAGACCGTAAGCGGAAGCGTTATGACAACGCGGTTGATGTAGTCGTACGTCTTC
ACGATCCGACCGATCCTAGCACCGAAGGTATGGCACCTCTGCGATCTGCACACGTTCAGCTCGGTGACGTCCCACGAACT
CTAGATCCAGCTGAGTGTCGAGGGAGAGCTTTGTCAGCACGACGGCGTAATGAGGGTGATGATGAAGTTACCGACGCAAG
GCTTCGCCTAAG
>chr6A_1
ATGGCTGAACATTTCCTCTTATGTGTAGGTGTAGGTGGTCATTTCTATTCTGTAGATTGGAAATGTACAGAAGGAGAGGA
-------------------------------------GCCTCTTGCTCGAGTGAGAGAGATGGCCCAGGTCAGCAAGGCC
CATGAGAAAGGAGGGGAG----------------------GAGAAAAAA-TAGATGGGCTAAGCCCATGCGACTTAGATA
GGAAAAAAATAACAGTGACTCAACCCAGGAAAGAGAAGGCAAGATGTTGAACAAATGGAATTTCTCCTAGAGTTTGAGAC
AGGAAAAACAGATTGATTTTCCTCTTGGGAAAATTTAGAGAAGG-AAAGAAGCTCAAACGAATATCAAACGGATTCACAA
A-------AACCAAAGTAAATTCAAAGGTGCATATTTAAATATGCCAAAGAAGAGAAAATAAAGCCAGACTAAAAGAAAA
GAAGTAAACTCAAATTTTAATTTAGGTTCACATTAGTTCAATTTAAATCCATTAAAT-TATAAAATTCCAATTTAAGCTT
GGTTATTAAATAAAACAAATGAAATTTTCTCGCCCTGATTTTTG-GAAAACTTTTTCTTAAACATTCCGAGAATCGGGAT
GTTACA--------------------------------------------------------------------------
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>chr3A_1
ATGGCTGAACGTTTCCTCTTATGTGTAGGTGTAGGTGGTCATTTCTATTCTGTAGATTGGAAACCTACAGAAGGAAAGGA
-------------------------------------GCCTCTTGCTCGGGTGAGAGAAATGGCCCAGGTCGGCAAGGCC
CATGAGAAAGGAGGGGAG----------------------GAGAAAAAA-TAGATGGGCTAAGCCCATGCGACTTAGAGA
GGAAAAAA--AACAGTGACTCGACCCAGGAAAGAGAAGGCAAGATGTTGAACAAATGGAATTTCGCCTAGAGTTTGAGAC
AGGAAAAACATATTGATTTTCCTCTTGGGAAAATTTAGAGAAGC-AAAGAAGCTCAAACAAATATCAAACGGATTCACAA
A-------AACCAAAGTAAATTCAAAGGCGCATATTACAATATGCCAAAGAAGAGAAAATAAAGCCCGACTAAAAGAAAA
GAAGTAAACTCAAATTTTAATTTCGGTTCACATTAGTTCAAATTAAATCCATTAAAT-TATAAAATTCCAATTTAAGCTT
GGTTAACAAATAAAACAAATGAAATTTTCTCGCCCTGATTTTTG-GAAAACTTTTTCTTAAACATTCTGAGAATCGGGAT
GTTACAG-------------------------------------------------------------------------
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>chr2A_1
ATGGCTGAACGTTTCCTCTTATGTGTAGGTATAGGTGGTCATTTCTATTCTGTAGATTGGAAACGTACAGAAGGAGAGGA
-------------------------------------GCCTCTTGCTCGGGTGAGAGAGATGGCCCAGGTCGGCAAGGCC
CATGAGAAAGGAGGGGAG----------------------GAGAAAAAA-TAGATGGGCTAAGCCCATGCGACTTAGACA
GGAAAAAA--AACAGTGACTCAACCCAGGGAAGAGAAGGCAAGATGTTGAACAAATGGAATTTCGCCTAGAGTTTGAGAC
AGGAAAAACAGATTGATTTTCCTCTTGGGAAAATTTAGAGAAGG-AAAGAAGCTCAAACAAATATCAAACGAATTTTAAA
ACAAAAACAACCAAAGAAAATTCAAAGGCGCATATTTTAATATGCCGAAGAAGAGAAAATAAAGCCCGACTAAAAGAAAA
CAAGTAAACACAAATTTTAATTTAGGTTCACATTAGTTCAAATTAAAGCCTCTGAATCTATAAAAAGTCAATTTAAGCTT
TGTTACCAAATAAAACAAATGAAATTTTCTTGCCCTGATTTTTGAGAAAACTTTTTCTTAAACATTCCGAGAATCGGGAT
GTTACAG-------------------------------------------------------------------------
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>chr5A_1
ATGGCTGAACGTTTCCTCTTATGTGTAGGTGTAGGTGGTCATTTCTATTCTGTAGATTGGAAACATACAGAAGGAGAGAA
GAGGAGGCGCTAGCTTGGCTGGGTATTGGCCCGGTTTGGCTTTGGTCCAAGTGGGAGAGAAAGA----------------
----AGAAAGGAAAAGTTGGCCTTTGGCCCATTCTGGTGTGAGAAAAAA-TATAGGTG----------------------
----------------GGCTTAACACAGGGAAGAGAGGAAAGACCTACTATCCACGGAAATTTGGTACAAAGTTTGAGAG
AGGAA-AACAAATTGATTTTCCTAAGAGGAAAATCTAGTAATGAAAAAGAATCTCAAACAAA-ATAACACGAACTT--AG
A-------AATCAAAGAAAACACAGACTCGCATATTTAAATATGCTTAAGACC--AAAATACAACCCACCTAAAATAAAC
AACAAAACTC--AAATTTAATTGAAGTTGGTATTAGGTCAAATTAAATCCTCCAAAT-TATAAAAGTCCAATTTAAGCTT
TGTTAACAAATAAAACAAATGAAATTTTCTCGCCCTGATTTTTG-GAAAACTTTTTCTTAAACATTCCGAGAATCGGGAT
GTTACAGA------------------------------------------------------------------------
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>chr6B_1363
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-------------------------------------------------------------------------AAGCTTG
TGAGCGGCTACATTCCCAAAACGTCGAACCCACGTCACCTTCGAGTCCTCCAGCGTGTTGAGCATCCTCTTTATATCCTG
CACCCAAGGTCCTACAGCGGACAGATTCCTTTCCGGGCTGTTGAGCATCTGTACGACAGCCTGACAGTCCAGCTCGACAT
GAGT--GCTGAACATGAAGCTCTATCGCCACCTGAATTGCTCGTCGGCAAGCCAGCACATCTGCCATCTCCGGGTCGACA
ACATTTGGTAAAAACTGGCAAAGCCCAGCCCTGAAAGCCCCGTTGTGATCCCTGAAGACCGCTCCTGCTCCTCCTTTATC
TCCATG--TCTCGAGACCGCGCCGTCGGAGTTGATCTTTACCCATCCATCTTCGGGAGGCTCCCAACGCTGGATGATCTT
TGGCTCCGACAGTGGCGCCCTCGTCTCGTGAGCTAGTTTCCATTCCATGAGCTGCACCTGAACTGTGCTTACTATTTCAT
GTGGCTGGGCAATCTTCTTGCCGTCTCTTGCATCATTCCTCGCAAGCCATAGTCCATACGCCGCCTGCAGCAGTGCTTCC
TTTTCATCGCCCGATGCCCCGGCGAACCAGCTCAGCAGCCAGGATGCAAGCTCGCGTTGGGAGGA---------------
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>chr7A_1363
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-------------------------------------------------------------------------AAGCTTG
TGAGTGGCTACATTCCCAGAGCGTCGAACCCACGACACATTCGAATCCTCCAGCGTATT---CATCCTCTTTATATCCTG
CACC-AAGGTCCTACGGCGGACAAATTCCTTTTCGGGCCGTTGAGCATCTGTACCACAGCTTGATAGTCCAGTTCGACAT
GAGCTCGCTGAACGTGAAAATCTATGGCCACCTGAATTGCTCGTCTGCAAGCAAGCACCTCTGCCATCTCCGGGTCAACA
ATATTTGGTAAAAACTGGCAAAGCCCAGCCCGGAAAGCCCCGTTGTGATCCTTGAAGACCGCTCCTGCTCCACCTTTATC
TCCATATATCTCGAGACCGCCCCATCAGAGTTGATCTTTACCCATCCATCTTCGGGAGGCTCCCAACGTTGGATGATCTT
TGGCTCCGATGGTGGCGCCCTCGTCTCATGAGCTAGTTTCCATTCCATGAGCTGCACCTGAACTGTGCTTACTTTTTCAT
GTGGCCGGGCCATCTTCTTGCCTTCTCTTGCGCCATTCCTCGCAAGCCATAGTCCATACGACGCCTGTAGCAGAGCTTCC
TTTTCATCACCCGAGGCCCCGGCGAACCAGCTCAGCAGCCAGGATGCAAGCTCGCGTTGTGAGGACATATGTGGTGGCGG
GG------------------------------------------------------------------------------
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>chr3B_1363
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-------------------------------------------------------------------------AAGCTTG
TGAGCGGCTACATTCCCAGAACGTCTAACCCACGTCACCTTCGAGTTCTCCTGCGTGTTGAGCATCCTCTTTATATCCTG
CACCCAAGGTCCTACAGCGGACAGATTCCTTTCCGGGCTGTTGAGCATCTGTACGACAGCCTGACAGTCCAGCTCGACAT
GAGCTCGCTGAACATGAAGCTCTATCGCCACCTGAATTGCTCGTCGGCAAGCCAGCACCTCTGCCATCTCCGGGTCGACA
ACATTTGGTAAAAACTAGCAAAGCCCAGCCTTGAAAGCCCCATTGTGATCCCTGAAGACCGCTCCGGCTCCTCCTTTATC
TCCATG--TCTCGAGACCGCGCCGTCGGAGTTGATCTTTACCCATCCATCTTCGGGAGGCTCCCAATGCTGGATGATCTT
TGGCTCCGATAGTGGCGCCCTCGTCTCGTGAGCTAGTTTCCATTCCATGAGCTGCACCTGAACTGTGCTTACTATTTCAT
GTGGCTGGGCAATCTTCTTGCCATCTCTTGCATCATTCCTCGCAAGCCATAGTGCACACGCCACCTGCAGGATTGCTTCC
TTTTCATAGCCCGATGCCCCGGCGAACCAGCTCAGCAGCCAGGATGAAAGCTCGCGTTGGGAGGA---------------
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>SNPs
---------S----------------------------------------------------------------------
----------------------------------------S---------------------------------------
-------------------------------------------------S---------------S--------------
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--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S
------------------------S-------S--------S--------------------S-----------------
----------------S-------------------S--S--S-----S---------S---------------------
-------------S--------S-------------S-S---------SS--S--S--S-----------S-------S-
--S--------------------S---S-------S----------------S-----S-------SS------------
---------S-S------S-S----------------------------S---S--------------S---------S-
----------S--S----------------S-----------S-S-----------------------S-----------
---------S-----------S---------------SS----S--------S-----S-S-------------S-----
--------S------S--------------------------------------S----S-----S-----SS----S--
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_1015
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-----------------------------------CTCGGGGTGTTACAACGACA-------------------------
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>reverse_2248
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-------GACCGATCCTAGCACCGAAG-----------------------------------------------------
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