>input_sequence_83344
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-----------------------------------------------ATGATCAGCAGCACCGACGACGTGCGGAGGACG
GTGCAGGCGAAGCCGGTTGTGGTGGTGGGGCGGCGGGAGTGCTGCATGGCACACGTGGCCCGGTGCCTGCTGCTGGGGCA
GGGCGCGAACCCGGCGGTGCTGGAGGTCAGCGACGACGCCGACCCGGCTGCGCTCGTCTTCGCGCTCTGGCCCAAGGACA
ACAGCACCAAGGTGGCCACCGAAGTCGCCTTCCCGGTGGTGTTCATCGGGGGCAGGCTGCTGGGCGGGCTGGACAGCCTC
ATGGCCATGCACATGGCCGGCGAGCTCGTGCCGGTCTTGAAGCAGGCAGGAGCCCTCTGGCTTTGA--------------
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>chr3B_1_TraesCS3B01G194500
GGAAGTGATGTAACCGGCGACACCTTCGTTTTCAAGTGATGATGATGGCAGTGACGTCCGCTAATTAACTCGTACTCCCT
CCGTCCGGAAATACTTGTCATCAAAATGGATAAAAGGAAATGTATCTAGACATATTTTAGTTCTAGATTCTTCCCTTTTT
ATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTACGTGGTATACGTGACAGCAACAGTCTGCTGACCTTATACTC
GTACAACTGGATCGCATAGATATTTCTTTTATTTTAAGAAAATTTATGACATGCTCATTCACTTGTTATCAAATATTTTT
TTTTGTTTGTCCGTAGAGCGGAATGCATTTACGTCATGTATGTTCGA----CGTATCTACCTACAAGGAAACTCATATGT
GTCTATGATGTATTACTCAATTTTTTTTTATTTACTCCGCATATTAGCTTTCGTCAAAGTCAAACTTCGTAAACTTTGAC
AAATTTATAAACAAAAAATATTAACATATGCAATAACAAATTAATATCATTAGATTCATTATTGAATGCACTTTCACATC
ACATTGAGTATACTATTGTTTATTATAAACTTGGTGAGACTTTATGAAGTTTGACTTTAATTAACTCTAATGTACAAAGT
AAATAAGAACGGAAGGAGTACTAGTAGTTTTTAGTGAGTGGGTATGTGTGATACTGTGTATTTGCTTGCGTGCAAGCGTT
GTATCCGATGTTTCCAATATTTTTTCAATACAATAT---GGAATAAGGTGGGTAAAACTCTGTGCATGTGCCATGTGGCA
CGCCATGACAAGGAAGCTGACCTAACGTCCCATAGCTTTATGCACTCTGTCCTAACCCCAACCCATATTTCTGACCTCCA
CATATCCACCTCCCTCCCCCACACCTCAGTACTGCTCGTCAAACTCAAGCGCACGAACGAAGGAACGACGGACCACATGC
AGCAAGCCAAGGCGCCGGCACCGTGGCTGACGGCGACGGCCACTGCCATGATCAGCAGCACCGACGACGTGCGGAGGACG
GTGCAGGCGAAGCCGGTTGTGGTGGTGGGGCGGCGGGAGTGCTGCATGGCACACGTGGCCCGGTGCCTGCTGCTGGGGCA
GGGCGCGAACCCGGCGGTGCTGGAGGTCAGCGACGACGCCGACCCGGCTGCGCTCGTCTTCGCGCTCTGGCCCAAGGACA
ACAGCACCAAGGTGGCCACCGAAGTCGCCTTCCCGGTGGTGTTCATCGGGGGCAGGCTGCTGGGCGGGCTGGACAGCCTC
ATGGCCATGCACATGGCCGGCGAGCTCGTGCCGGTCTTGAAGCAGGCAGGAGCCCTCTGGCTTTGAACCTCCGTTCACGC
CGTGCCGTTAATTAGTTAG-CTCTCGCCATATATGTGTGCGAGTGATTTGTTTCGTGTTTATTATCGCCATATATGTCCT
CATGCCATCTAG---TAGTATTGTAGACTTCCCTTTGGGAAACGAAAATGGCAAAGAAACAGAGTTTGTTCATAAGATGT
GTGCAAAAGGATTTGGAATCATCCTACAGACTTCCATTTTGTTTTTGTTTTTCGAGGAGGCTTGAATAACTCATGAATTT
TGTAAGCTCTCAAACTTTGCTCACTTGTGTCCTGCGACCCAATTGTCTATAGGTTGGTTGAGCTCATGTATGTGTCAATC
GAACAGGACTAACAATTTTCTATAAAA-ACACAAGAGGAATC-ATACCGTTTTCCGGCAAGTCAATAATTACTGCAAAGT
CTTTCTTTTATCCGGCG---------------------------------------------------------------
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------------------AACATTTCGGAAAGGAGAGAGTTCAGGAGTTTGACCCACATTACCAACGTCGGTTACGAGTG
TTTGGGTTGATGCTAGCGGAACTGGCTACTGGCCAGTCGCCTGATTTTATGAAATGGATCAGTCGAATCCTAACCAATCG
ACTGAACCAAAATTGTGGTCAGCCAATTTCAGTGTTATAGCACACGTTAACTCTTTTTGCATGCGCTCAGTCTTTCGAAG
ATGCTCATATGGGTAGGATGTGCGTGTATGCGTTTATAAAAGTGAGTGCATGTGCGGGCATGCGTTCATAGCACTTGCTT
CTGTACTGTGTTATAAAAACTCCTTTTGCATACAAAACCAACTGGAGCTCACAAGACTTCATGGACCCAATGTAAAACAA
TGGCCCGTTGATAAACAAAAATAAAAATAGAGAAAAACAAATAAAAATGCAGACAACTTACACAAAAATTGCACATTTGT
ACGATATGCAAAAATAAGCATATAGGAGTGGAATCTATGCAAAAAAGAAATTTTGTAAGAAGGAATGAATTATTTATTTT
ATATTTGCAATCTCACACATGTATATTTAGTTT
>chr3D_1
GGAAGTGATGTAACCGGCGACACCTTCGTTTTCAAGTGATGATGTTGGAAGTGACGTCCGCTAATTAACTC---------
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------------------------------------GTACGTGGTATACGTGACGGCAACAGTCTGCTGACCTTATACTC
GTACAACTGGATCGCATAGATATTTCTTTTCTTCTAAGAAAAGATATGATATGCTCATTCACTTGTTATCTT---TTTTT
TTTTGGC--TCCGTAGAGTGGAATGCATTTACGTCATGTATGTTCGATAGACGTATCTATCTACAAGGAAACTCATGCGT
GTCTCTGATGTATTACTAA-------------------------------------------------------------
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---------------------------TTTTTAGTGAGTGGGTATGTGTGATACTGTGTATTTGCTTGCGTACAAGCGTT
GTATCCGATGTTTCCAATATTTTTT-AATACAATATTAAGGAATAAGGGGGGTAAAACTCTATGCATGTGCCATGTGGCA
CGCCAGGACAAGGAAGCTGACCTAACGTCCCATGGCTCTATGCACTCTGTCCTAACCCCAACCCATATTTCTGACCTCCA
CATATCCACCTCCCTCCCCCACACCTCAGTACTGCTCGTCAAATTCAAGCGCACGAACGCAGGAACGACGGACCACATGC
AGCAAGCCAAGGCGCCGGCACCGTGGCTGACGGCGACGGCC-CTGCCATGATCAGCAGCACCGACGACGTGCGGAGGACG
GTGCAGGCGAAGCCGGTTGTGGTGGTGGGGCGGCGGGAGTGCTGCATGGCGCACGTGGCCCCGTGCCTGCTCCTGGGGCA
GGGCGCGAACCCGGCCGTGCTGGAGGTCAGCGACGACGCCGACCCGGCGGCGCTCGTCTTCGCGCTCTGGCCCAAGGACA
ACAGCACCAAGGTGGCCACCGAAGTCGCCTTCCCTGTGGTGTTCATCGGGGGCAGGCTGCTGGGCGGGCTGGACAGCCTC
ATGGCCATGCACATGGCCGGCAAGCTCGTGCCGGTCTTGAAGCAGGCAGGAGCCCTCTGGCTTTGAACCTCCGTTCACGC
CGTGCCGTTAATTAGTTAG-CTCTCGCCATGTATGTGTGCGAGTGATTTGTTTCGTGTTTATTCTCGCCATATATGTCCC
CATGCCATCTAG---TAGTATTGTATACTTCCCTTTGGGAAACAAAAATGGCAAAGAAACAGAGTTTGTTCATAAGATGT
GTGCAAAAGGACTTGGAATCATCCTACAGACTTCCATTTTGTTTT-GTTTTTCGAGGAGGCTCGAATAAGTCATGAATTT
TGTAAGCTCTCAAACTTTGCTCACTTGTGTCCTGCGACCCAATTGTCTATAGGTTGGTTGAGGTCATTTATGTGTCAATC
GAACAAGACTAAAAAATTTCTATAAAAAACACAAGAGGAATC-ATACCGTTTTCCGGCAAGTCAATAATAACTGCAAAGT
CTTTCTTTTAGGACAACGCTAACACCCACACGTGTGGTGGAAGCGAAACCTGTCCACACGCTCTAATACACACAAACTTT
TTTTGGATTTTCAATTTTTAAAATGTTTTATCTCTTGAATAAAAAATCCGATTGAAGATCCGTTTTCACCATTAAATCCC
TCGCGACGAGATCTTCTAAACTACATCTCATATCAATATATTTCGACGAATTTTTTTGGGTTAAAAGGTGCCATGTCTAT
TGCACATGAATTGCCATGATGTTTACACTAAAGTTGATATGTTTCAGCTATTTTCTAATATATTTAAAAGTAAATTTTGA
CATATTATAAAACGGGGAATTAAGAAACTAGACTTGCCATGAACCATAAACTAAAATTAACATGATACATGCACTTAAAA
TTTCCATGGTTCATACAAAAAATAATTTTCATGGTCAAAGTACAGGAATTGCCATCAACAAAATACTAAAATTGCCATGT
TGTACAAACTAAAATTGCCACATGGCAATTTTAGTTTAAGCACTATGGCAACTACAGTGTAAACATCATGGCAACTTTTG
GGCAAAAAAAATTTTGGTCGAAACATATCAACATGGGATCTAGTTTGAAGATCTCGTCGAGACGGATTTAATGGTGAAAA
CGGACTTTTAATTGGATTTTTTAATTAGGAGATAAAACATTTTGAAGCCGAAAACCAAAAAGATTCCTGCTGATGTCATC
TGTTTTGACGTGGCAAAATGAGTGGTAATGGAGGCGTGTGCGTGATGTGCAAGATATCACACGTGTGGGCATTAGTTTTT
CGTTCTTTTATCCGGCGAAACATTTCGGAAAGGAGGGAGTTCAGGAGTTTGACCCACATTACCAACGTCAGTTACGAGTG
TTTTTAATGCTAGC------------------------------------------------------------------
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>chr3A_808
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--------------AGTTGGCCTAACGACCCATTGCTCTATGCACTCTGTCCTAACCCCAACCCATATTTCTGACCTCCA
CATATCCACCTCCCTCCCCCACACCTCATTACTGCTCGTCAAACTGAAGCGCACGAACGCAGGAACGACGGACCACATGC
AGCAAGCCAAGGCGCTGGCACCGTGGCTGACGGCGACGGCCACTGCCATGATCAGCAGCACCGACGACGTGCGGAGGACG
GTGCAGGTGAAGCCGCTTGTGGTGGTGGGGCGGCGGGAGTGCTGCATGGCGCACGTGGCCCGGTGCCTGCTCGTGGGGCA
GGGCGCGAACCCGGCGGTGCTGGAGGTCAGCGACGACGCCGACCCGGCGGCGCTCGTCTTCGCGCTCCGGCCCAAGGACA
ACAGCACCAAGGTGGCCACCGAAGTCGCCTTCCCGGTGGTGTTCATCGGAGGCAGGCTGCTGGGCGGGCTGGACAGCCTC
ATGGCCATGCACATGGCCGGCGAGCTCGTGCCGGTCTTGAAGCAGGCAAGAGCCCTCTGGCTTTGAACCTCAGTTCATGC
CGTGCCGTTAATTAGCTACCCTCTCGCCATATATGTGTGCGAGTGATTTGTTTCGTGTTTATTATCGCCATATGTGTTCC
CATGCCATCTACAGCTAGTATTGTAGACTTCCTTTTGAGAAACAAAAATGGCAAAGAAACCGAGTTTGTTCATAAAAGGA
CTT------------GAATCATCCTACAGACTTCCATTTTGTTTTTGTTTTCCGAGGAGGCTCGAATAAGTCGTGAATTT
TGTAAGCTCTCAAACTTTGCTCACTTGTGTCCTGCGACCCAATTGTCTATAGGTTGGCTGAGGTCATGTATGTGTCAATC
GAACAAGACTAACAATTTTCTATAAAAAACACAAAAGGAATCAATACCGTTTTCCGGCAAGTCAATAATTACTGCAAAGT
TT------------------------------------------------------------------------------
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--TTCTTTTATCCGGCAAAACATTTCGAAAAGGAGAGAGTTCAGGAGTTTGACC--------------------------
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>SNPs
--------------------------------------------S---S----------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-------------------------
------------------------------S--S--------SS-----S--------------------SSSSS-----
-----SSSS---------S----------------------------------------S----------------SS--
----S------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------S--------
-------------------------S----------------------S------------S------------------
-----S---------------------------S---S------------------------------------------
-----------------------------------------------------------S--------------------
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--------------------------------------------------S--------------------S--------
------------------------------------------------S-------------------------------
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-------------------------------------------------------------------------------S
-------------------------------------------S------------------------------------
-----------S--------------------------------------------------S------S----------
--------------------------------------------------------------S-----------------
-----S--------------------------------------------------------------------------
----------SSSSSSS---------------------------------------------------------------
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---------------------------------------------------------------------S----------
---SSSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_92
------------------------------------------------------------------------TACTCCCT
CCGTCCGGAAAT--------------------------------------------------------------------
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>reverse_2653
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------------CTAGCGGAACTGGCTACTGG------------------------------------------------
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