>input_sequence_83339
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----------------------------------------ATGGCGGAGGCTTTAGCACTCAAATTTGGCCTAACACTGG
CGCAAAGGGCCGGATGCAATTGCCTTATCATAAGCTCGTACAATATAGAGGTGATTGATTCGGTGAATGATGGAGGGCAG
TCGGCGGGTGTGGCAGCAGCAATATTCGAGGATTGTTTTCATTATGCATGTGATTTCGTTACTGCTAGGTTTGAGCACTG
TAATAAAGAAGCAAATAAAGTAGCTCATGAGCTTGCTAGATTAGCTAGATTTTCTTTGACCTCTAATTGGTTTAAGGAGC
CTTTAAATGAAATTGTAATGATCCTCACAAACAACGTACTACTTGTCACAAATGAATAA---------------------
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>chr3A_1_TraesCS3A01G429500
TTCTCCTCCCGTCACCGGCTGCCGAAGCGGCAGGCAGTGGAAAGGCGAATCCACGGGCTCTCCGATGAAGTCTGGAGAGG
AAAGCTTTGCCCTAGCCATCTAGGGTTAGGGGAGAAAATACTTCTTATCCATCGTATAATAAAAGTTTTAACTAAGCTAT
TTGTGATGCACACTTGCCCTCTTTCGGCTAGTTTGCTCAAATGTCTAAAAAGAAATAAAATAAACTAGTTACTTCTTCAA
TTTCATCCACCCTCGGCCGCGCCATCTCCACCCTATGTTTCCTTGTTGGTTCGCCCATTGTTTTAAATTTTAGTTTCAGA
AATATTTCAGTGGTGACTCCACCTTATGTTTCCTCCATTCACAACAAATTTACTCAGTGTCCGCTCCAATCGATCGTCCA
TCTAAGCTATGTGGACGCCATGTTACCCATTCAACATGGGTTAGCCTCCGGACATGCTATTGGTTGTCGCTGATAGACGT
GTCAAAGTTTTTGACCAGCAGCCAGCCTACCCCTTCTTCATTCTCTCCCGTCCTTGCTTCACCTCTCGAATGGAGCTCAA
ACGGATGTCGCATGAGCATTTGGTCCTGAGATGTTCAAAGATCTCTCATAGTTCAAATATATGCATATTGATTTACACGA
CTATAATCTAATCCAGGCCCAATGTGCACATAATTTGTGTTATGTGTTATTGCTTGGTGGGCGGGGGCGGGGGGAGAGAG
AGAAGAACCAAAATATTATCAAATGATTCAAGTTGAGGTGGATGAGGCAAATCGCTTGTTGAGTCCTAACCCTGCCCATG
AGAGGATGTTTGAGATAATCGCCAATTCTCCTCAGCTCGTGCACTTTATGGGGCACCGAGGAGGGTTTGTTAAACTTAAT
GCGGGTGCCTCTTTTGATCACGATCTTCTTAGGGGTACGATAGGAGCGGTCCTTAGAGATGACAGAGGCAGGTTTATTGC
TGGAGGGAATGAGAAATTTGACTTTTGTGCGGATGTGTTAATGGCGGAGGCTTTAGCACTCAAATTTGGCCTAACACTGG
CGCAAAGGGCCGGATGCAATTGCCTTATCATAAGCTCGTACAATATAGAGGTGATTGATTCGGTGAATGATGGAGGGCAG
TCGGCGGGTGTGGCAGCAGCAATATTCGAGGATTGTTTTCATTATGCATGTGATTTCGTTACTGCTAGGTTTGAGCACTG
TAATAAAGAAGCAAATAAAGTAGCTCATGAGCTTGCTAGATTAGCTAGATTTTCTTTGACCTCTAATTGGTTTAAGGAGC
CTTTAAATGAAATTGTAATGATCCTCACAAACAACGTACTACTTGTCACAAATGAATAAAGTGGGGGTTTTTTTTTTGAA
AAAAGGAGAGGTTCTCGACAAAGCGGATGACATCACGCAAAATAGAGGTCTCCTGCCTCGATCTCCACCCTGGTGTGACC
ATCGTGGCTGATATGCATGGCACCGAAGAACCCATGGTGTTTTCAGTGCGCAGATCGACGGCTTCAAGCCCCGCTAATTG
TCGGTTGCCGGTTCGTCCCTTCTCAGCAGTGGCGATGATAGTGTCAAGTGAGTTTTGACGACGGGTTCTCTCATTTTTCA
GACTTATGTTTCCCCTCTTCTTCGTCGACGGTATGGTCATGAATACGTGGTTCGATGACTTGCCATGCAAGGGGTGTGTC
CCCGACCACGAAGTGTTCAACGGCTATCACCATGGGCAGCTCAAAACATATTTTTCATGGAGTGTTTCCATCCGAATCAT
GGAAAAGTTGAGATGTACTATATAAAAGTAAAAAGTAGCTAGTGATGTTTGACTTCGAAGAACCTCGATAC-TTTCTCAA
TATTTTTTCATCGATCGTTGGTGTTTGTTTTCGCTGCAATTTGTTCAACCCAACGTACTATGTTTAATCGGTCAAACAAA
AC------------------------------------------------------------------------------
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---------------------------------------------------------------------------CAGAT
TGTTTGTCGAAAAGATTGAGGTGCATGGACAACACACTGCCTAGTGTAGTTTACCGACCAAATCTGTTCCGATATCTACG
GTAAAAGGCCGGTGATCTGGCCAGAAGATTTTAGTCCAACCTTTTAAGTTTTAACCCAGACATCCAAGCCACCAGCCGTC
TCCATCATTCGCTAACCTACGTGGGCACCCTACAGATCAAAAATTCAGTGGCGGGAGACACGAATCAAGCACATGACATG
GCACGACATGACCAGGGAATGAAACCAACGCAATCTCTGGGGGAGGGCCGCACCGGCCAAGGGAGACGGCACGGCAAAAT
TACGCATTATCCTTTGGTCGTCAATGATTCGCTCGCACTTGATCCAGGGGAACAAATGCGATGTTGCTGCTACGTACAAC
GGGAAACGAACAA
>chr3D_1373
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------------TCTCGACAGTGCGGATGACACTGCACAAAATACAGGTCTCACGTCTCGATCTCCATCCTGGTGTGACC
ATCGTGGCTGATATGCATGGCACCGAAGAGCCCATGGTGTTTTTATTGCGCAGATTGACGGCTTCAAGACCCTCTAATTG
TCGGTTGCCGCTTCGACCCTTCTCATCGGTGGCGATGATGGTGTCAAGTAAGTTTCGATGACGGGTCCTCTCATTT--CA
GTCTTGTGTGTTCCCTCTTCTTCGTCGACAGTTTGGTGATGAATCCGCAGTCCGATGACTTGCCATGTAAGGGGTGTGCC
CTCGACCACGAAGTGTTCAACGGCTATCACCATGGGCAGCTCAAAACATATTTCTCATGGAGTCTTTCCATCCGAGTCAT
GGAAAAGTTGAGATGTACTATATAAAAGTAAAAAGTAGCTAGTGTTGTCCGACTTCGAAGAACCTTGATACATTTCTCAA
TCTTTTTTCATCGATCTTTGGTGTATGTTTTAGTTGCAATTTGTTCAACCCAACGTACTATGTTTAATCAGTCAAACAAA
ACCAGATTAAAGGGCAGCTCGGTGCACGTAGCTTCCGCTTGCACAAGGTCTAGGGAAGGGTCCGACCACTTTCGATCTAT
TGTACGCAGTCCTACATTTCTGCATGAGGTTGTTTTCAGGACTTTTTTTCTGAAATAAAAGATAGATCATGTTCTACCTT
ATGCATTTCAAAACAGGCCACAGCCTGATGACCGAAAAGGTCAATTACATGAAACTTATGTTACGCACCGTGATGCAGAG
GCCATAAGTTGCCTTCGAAAAGAAGAACAGAGGGGGGGGGGGGTGTGTTTTAGAAGAAATTACATGGCATATGTTAAGTA
TCTATGCTAGAAACTAAGTTGATGCACCCAGAAAACTAGAGACTCTTTATCCCTCGTGCGCATAGCCCTATTCATCCAAA
GGGATAAGAGTTGGACTGCATATTGTCTGGTGTAAGAAGGTGACCAGCGGTTGAGATAAAAAACCCTGTCATTTCTGGTG
TGCCATAGCGTGACAGCACAGGCAGCAAAAAGAACATGCACTTTCTTGACAGAAGGCCAGCGGAAATGTAGTTGTTGCAC
AAACTCCAGAATGTCCGGGGAGCAGGAGGCATGACTGGCCATATTCAACTTGCTCCAAACTGCATCAGCCGGCGCGTAAC
GAAGAACTATGTGACTGATGGATTCAGTGGCCGGGCAGATATCGCAATCAGGATGAGAAGCAGCAGAAAACCACCTCTTC
TTTGTCATATTGTCCCGTGTGTTGAGTCGCCCAAAAAGCGAGTCATAGAAAAATCCGATCTTTGAGAAGGATGATAGGAT
CCCAGATCCAATGCGCGAACGTGCAAGACGTACCTCTGAAATTCGGGACTTGAAAAACGTGACCTCAAATAAAGTCAGAT
TGTTTGTCGAAAAGATTGAGGTGCATGGAGGACGCACTGCCTAGTGTAGTTTGCGGAACGAATCAGATCCGATCCCTACG
ATAAAAAGCCAGTGATCAGCCAA-AAGATTTTAGTCCAACCTTTTATGTTTTAACCCAGACATTCAAGCCACCCGACGTC
TCCATCATTCGCTAACCTACGT-GGCACCCTACAGATCAAAGATTCAGTGGCGAGAGACACGAATCAAGCACATGACATG
ACACGACATGACCAGGGAATGAAACCAACGCAATCTCTGGAGGAGGGCCGCACCGGCCAAGGGAGACAGCACGGCAAAAT
TACGCATTATCCTTTCGTCGTCAATGATTCGCTCGCACTTGATCCGGGGGAACAAATGCGATGTTGCTACTACGTACAAC
GGGAAACGAACAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------SS----------SSS-S-------S-------SS-S-----------S------------
-----------------------------S-------------S-S---------S------------S---S-------
----------S----S---------S-S-----------S---------S-----S--S-------S---------SS--
-S---S---S-S-----------------S--S----S------S--SS--S---------------S----------S-
-S---------------------------------------------------S---------S-----------S----
--------------------------------------------S---SS---------------S--------------
-S--------------S-------S------S-S-----------------------------------S----------
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-----------------------------SS--S------------------S-S--S-S----S-S------SS-----
S-----S---S------S-S-S-S----------------------S----------------S---------S-S----
----------------------S------------------S-----------S--------------------------
S---------------------------------------S--------------------------S------------
---------------S-----------------------------S----------------------S-----------
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>forward_296
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------------------------------------GTTTCCTTGTTGGTTCGCCC------------------------
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>reverse_1367
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------AGAGGTTCTCGACAAAGCGG------------------------------------------------------
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