>input_sequence_83329
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---------------------------------------------------ATGGCCACGGCTACTGGTCAGAGCCGGC-
-----------GCCGGTGTACC------------GACAGCCGCCCATCGTCGCCGTCCACGAGGCCGGGCACAAAGCCTA
CCAAGAAGGCGCACCGAAAGCCGAGCACGCC---------------------------GCCTACTTGCAAGACCAGGCTG
GCAGCGAGACGCCGCCGAGGCATCCTGCGTGG---CACAGCAAGGTCGGCGTCGAAGCTGGCAACGGCGAC------TAC
ACACCGCGCCCCCACGAAGCTGCGACTGA---------TCACCGGGTCCGGGAGCAC---GCCGCCATGGAT---TACCA
CCACTACCCAACCACTACCACTGCTCTCGCGAGGTAC----------------------GAGGTGG---CTAGTCGTTAG
GATTAGCTAG----------------------------------------------------------------------
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>chr3A_1_TraesCS3A01G052200
CAACAAGCTAGAACTTTATGTGGGCTTAGATGTGGCAACTGTGCTCAAATGTAAGGAGTCAGCAATGGATTTTGCGAAGG
TCTCCTACACCCACCGACTCCGCGAAGCAAATGAAGTTGCTAATGATTTAGCAAAGAAATCCTTTAGCGAAAGAACTTCT
AAAGTTTGGGACTCCATGTTCCTTGATTTTATTTCTTATTCCCCTGTAAATAACCTTTTTTCGATTATCTGAGAAATAAA
ATCTTGATGCTTTCAGAAAAAGAACTTAACAACATTCAGCCCTCATTTAATTTTCCTTGGCTCTGCCGCCGCTAACAAGA
GTTTACAGAAAATATTTAATTGTATTTTGATGCAAAACTGTT--ATTTTGAACGGGTA-AAGAATCTAGTGCGCGGCAGA
TTTAGCGAAAACCAGTGAATGAAGAGTCCAACGTCGTTGTTGCCCGCCCCATGTGCGCCGTGTTGAAAGCTTGAAACTGA
AACACGGCACGACGACCGGCCAGTCCAACATGCTGACAGGACAAATTATT----------------ATCCGGCCCCCAAA
AA-ATGCAGTCCATCCTTCGTCCAGCGGCAGGATCGTTTTCTGCCGCCCCGCGGCACCGCCCTCCCTCCACGATTCGCAC
GG------GCACGGTTGACCCTGGATGAAGACCGGAGAGCGCGGGCCCGAAGCTGAAACGACGAACCCGC-------AAA
CAGCAACAGCTAGGGTTGGGGAGACGTGTCAAGGTGAACCGAACCCGCACTGAGCT------------------------
----------------------------------------------------TCTCGGC-----------GCCGAATATA
TA------TCACCCAGCCCCCCCACACCAACACTGTCAGTTTCAGGGCCATCAACACCACCCCTG-CACTGAT----ACC
CCCAGCA----GCTACTTCCAGGATAGTGCTGCTTCCCATTACCAGTAGTCCCCCAGC---------------------A
CACAAAGAAGCACCCGGCGCCAG----------TCACCACTCGCCACCAAGAA-----AGAATGTGCTTGGAGTTCGGCT
CGTGCTTCGGCGGCCGCAGACGTGACGACTACGGCCGCAGCAGAGGGCACCATGGCCACGGCTACTGGTCAGAGCCGGC-
-----------GCCGGTGTACC------------GACAGCCGCCCATCGTCGCCGTCCACGAGGCCGGGCACAAAGCCTA
CCAAGAAGGCGCACCGAAAGCCGAGCACGCC---------------------------GCCTACTTGCAAGACCAGGCTG
GCAGCGAGACGCCGCCGAGGCATCCTGCGTGG---CACAGCAAGGTCGGCGTCGAAGCTGGCAACGGCGAC------TAC
ACACCGCGCCCCCACGAAGCTGCGACTGA---------TCACCGGGTCCGGGAGCAC---GCCGCCATGGAT---TACCA
CCACTACCCAACCACTACCACTGCTCTCGCGAGGTAC----------------------GAGGTGG---CTAGTCGTTAG
GATTAGCTAGAGCACGCACGGCCATGGCAGTTCATCAAT-------------TC-------CCCCTAAACACTAGTACTG
CCTCTGCTTCTGCTCTGTACGGCAGCTC--TGTTTTGTTCTGTAGTTCTGTC-TCTTTTTTTTTCCTTCTCTTTCTCTGT
TTGGGTTTTGGCCAGTCGTCTTCCAATCTGCTGAAACTGAAGT---------------AGTGTGTCTGTGTGTGAGAGGA
ACATGAGGCTGTGGATTTTGACAAAGAGCCTCCATGATTTTTCCAG------------------------GAAAGCTTTT
GTTGGCAGATGGTTTTACTTTTACCAGTCTGTTTGTGTAGTGTAGTTGCTTGTAATTTAGCTACAGCTGCTTTCGCCTTG
TGTCATATCTCATATATAATCAAGTGAAAGAAAG-------CACTGTCGAATCTC-ATATGAGTCTCCATCTCTGTTTTA
CCTATTGCAA-GTGGCTTATCTAACTTCACTGATTCACTCACTTCTCACTAGCCAAGCAATTCTTGAGAGCAGCAGCAAA
GATATTTATTGCTTGCTGGTAGATCAACTACTGCTCGGAACAGAGCTCGGCACATTATTGCACTGATTCAGAATATTTTC
TAAACAGACCAACTGTTAAATCTGGATTCCGTA-----------------------------------------------
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-----TATTTTTTTAGATAAAAGGCCATAGGCCGACTTTATAAATAAAATCACCAGGCAGAGTTAACATAGACCCATATG
ACC-----------------------------------------------------------------------------
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-----------------------------------------------AGCACGAGAACATGCAGAGTATCAACCCAGACA
ACACGAGAGAATAGTCTAAGTACATGGCTTCCAAGCCAGTACACGGCTCACAGGCCGGAGGTAGAAAGATAATGAAAGCA
AGCCACTAGCGCCTAAGTGCCTGCTTGAACTGGGGAGATGGAGATAGCAGAATTCCAGATCTTGGCCAACATGGCGTCGA
GGACGTCCCTGTCCTCCTCCTTAGTCAATAATCTCCACTGCTGCAGGAATATACAAGTCTTAAATAGCAATCAGCAGGCT
TAGCAGGGAAAACATGCTCGATAGTAAATTTATTCCTTGTCGTCCAAAGGGAACAGC
>chr3D_265
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------------------------CTTAACAACATTCAGCCCTCATTCAATTTTCCTGGCCCCGCCA-CCGCTAACAAGA
GATTACAGGAAATGTTTAATTGTATTTTCAGGCAAAAATTGTCAATTTTGAACGGGTAAAAGAATCCAGCGCGCGGCAGA
TTCAGCGAAAACCAGTGAACAAAGAGTCCAATGTGGCTATTGCCCGCCCCAGGTGCGCCGTGTTGAAAGCTTGAAACTGA
AACACGGTACGACGACCGGCCAGTCCAACATCCTGAGGAGACCCTAT------------CATCCACAGCCGGCCCCAAAA
AAGATA--------------------------------TTCTGCCGTCCCGCTGCACCGCCCTCCCTCCATCCATGA---
-----TTCGCACGGTTGACCGGCCCTGGAGACCGGAGAGCGAGTTG----------------------------------
---------------------------------GACGAGCCTGGTCGATCGGGACCTAGACCCAGCCT-----TCCTACG
GAGCTTCGCTTGGCTTCGAACGCACACGTCGCGTTCAGCAAGAGCTCTAGTTTCAGGGCCATCAACACCACCCGGATATA
TA------TCACCCA------CCACACCAACAATGTCAGTTTCAGGGCCATCAACACCACCACTG-CACCGAT----ACC
CAC--------GCTAGTTCGAGGATAGTGCTGCTTGCCACAACCAGTAGCCCCAGGCCCAGCACG----CACGA------
-------------------------------------------------GCCACCTATAGAATGTGCTTCGAGTTCGGCT
CGTGCTTCGGCGGCGGCAGGCGGGACGACTACGGCCGCAGCAGAGGGAACCACGGCCACGGCTACTTGTCGGAGCCGGC-
-----------GCCGGAGTACC------------GGCAGCCGCCCATCATCGACGTCCACGAGGCTGGGCACAAGGCCTA
CCACGACAGCACGCCGAAAGCCGACCACGCCCA---CGCCGGCAGCCACGC------AGCCTACTTGCAAGACCAGGCTG
GCGGCGAGACGCCGCCGAGGCATCCCGCGTGG---CACAACAAGGTCGGCGACGACGCCGGCAACGGCGCC------TAC
ACGCCGCGCCACCACGAAGCTGCGGCTGA---------TCACAGGG------GCAAC---GCCGCCATGGCT---TACCA
CC------------------------------------------------------------------------------
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>chr3D_354
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----------------------------------AAAATTGTCAATTATGAACGGGTAAAAGAATCCAGCGCGTGACAGA
TTCAGCGAAAACCAGTGAACGAAGAGTCCAACGTCGGTGTTGCCCGCGCCAGGTGCGCCGTGTTGAAAGCTTGAAACTGA
AACAC------------------------ATCCTCACGAGAGCCCGCCCTCCATAATCACATCCACAGCCGTCCCCAAAA
AT-ATA--------------------------------TTCTGCTGTCCCGCTGCACCGCCCTCCCTCCATCCATCCATC
CATGTTTCACACGGTTGACTGGCCCTGGAGACCGGAGTCCGGAGAGCGAGTTGGACGAGAATGATCGACTGGGACCTAAA
CAGCCACATCCGAGGGCAGGGAGATGTGTTGACGACGAGCCTGGTCGATCGGGACCTAGACCCAGCCCACCCATCCTACG
GAGCTTTGCTTGGCTTCGAACGCACACGTCGCGTCCAACACGAGCTCTAATCTCTCCAA-----------CCGGAATATA
TA------TCACCCA------CCACACCAACACTGTCAGTTTCAGGGCCATCAACACCACCACTGATCA--ATACCCATT
CCCAGCA----GCTACTTCCAGGATAGTGTTGCTTGCCACTACCAGTAGCCC-------AGCACACGCACACGAGGGCCA
CCAG-------------------------------------------------------GAATGAGCCTGGAGTTCGGCT
CGTGCTTCAGCGGCCGCAGACGGGACGACTACGGCCGCAGTAGAGGAAAC---------GGCTACTGGT------CAGCA
TCGGTGACAGCGCCGGTCTACC------------ACGAGCCGCCCGCCCTCGCCGTCCACGAGTCCGGGC---------A
CCACGACAGCACGCTGAAAGCCGACCACGCC---------------------------GCCTAATTGTAAGACAAGGCTG
GCAGCGAGACACCGCGGAGGCACTCCGCGTGG---CACAACAAGGTCGGCGACGACACCGGCAACGGCGCC------TAC
ACGCCGCGCCGCCACGAGGCTGC---TGA---------TCATAGGG------ACAAC---GCCGCCATGGAT---TACCA
CTACTACCA--------------CCCTCGTCAGGTAC----------------------TA----G---CTAGTCGTTAG
GATTAGCTAGAGCTAG------CATGGCAGTTCATCCCATC-AATCCCTCCCTC-------TCCCTAAACACTAC-----
----------------------CGCCTC--TGTTTTACTCAGTGGCTCTGTC-TTTTTTTCCTCTTCTTG----TT-CTG
TTGGGTTTTGGTCAATCGTCTTCTGATCAGCCGTAACTGAAAGGCACCTAGAGCATAGAGTGC------GTGTGAGAGGA
ATAGGCGGCTGTGGATTTTGACATAGAGCCTGCATGTTTTGTACGGCAGGGAGAAGAAGCAGCAGCTCCAGGAAGCTTTT
TCTGGTAGATGGTTTTACCTTTACCAGTCTGTTTGTGTAGTGTAGTTGCTTGTAATTCGGCTGGAGCTGCTTTCACCTTG
TA-------CCATACATAATCAAATGAAAGAACTAAGAAATCATTGCCAAATATC-AGATGAGTCTCCATCTATGTTTTC
CCTATGTGCATCTGGCTTCTC-----------------------------------------------------------
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>chr3D_742
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------------------------------------------------------CT------------------------
----------------------------------------------------TCTCGGC-----------CCCGAATATA
AA------TCACCCA------CCACACCAACACTGTCAGTTTCAGAGCCATCAACACCACCACTG-CACAGAT----ACC
CCCAGCA----GCTACTTCCAGGATAGTGCTGCTTCCCACTACCAGTAGCTCCCAGCTCCCAGCTAGAGTAGTTCG----
----AAGAAGCACCCGGCGCCGAGTCGGCCACCTCACTACTCGCCACCAAGAA-----AGAATGTGCCTGGAGTTCGGCT
CGTGCTTCGGCGGCCGCAGACGGGACGACTACGGCCGCAGCAGAGGGAAC---------GCCAACTGGT------CGGC-
-----------GCCGGCGTACC------------AGCAGCCGCCCACCGTCGTCGTCCGCGA------------------
------AGGCCGGCCAAAAGCCGACCACGGCGA---CGCTGCCGGCCAGGGCGGGTACGCCGACTGGCAAGACAAGGCTG
GCAGCGAGACGCCGCAGAAGCTTCCCGCATGG---CAAAACAAGGTCGGCGACGACGCCGGCAACGGCGCATACACATAC
ACGCCGCGCCCCCATGAGGCTGCGGCTGA---------TCATAGGG------AGCAC---GCTGGCATGGAT---TGCCA
CCAGTACCCAACCACTACCGCCACT-----------CTCGCAAGGTACCAGATGGCCAGTC----G---TTAGGACTTAG
GATTAGCTATAGC----ACGGCCATGGCAGTTCATCAAGTCC--TCCCTCCCTCCCTTCCTCCCCTAAACACTACTACTG
CCTCTGTTTCTGCTCTGTC----------------------------------------TTTTTCCTCCTCAATTTCTGT
TTGGGTTTTGGTCAGTCGTCTTCCGATCTGTTGAA------AGGCGCCTGGAAAACT------------GTGTGTGAGGA
ACCGGAGGCCGTGGATTTTGACACAGAGCCTCCATGTTTCGTGCGGCAGGGAGAAGGTCCAGCAGCTCCAGGAAGCTTTT
GATGGTAGATGGTTTTACTTTCACCAGTCTGTTTGTGTAGT-----TGCTTGTACTTCAGCCGTGGGTGCTTTTGCCTTG
TA-------TCATATATAATCTAGTGAAAGAAAG-------CACTGTCAAATCTC-AGATATGTCTCCATTTCT------
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>chr3D_742
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------------------------------------------------------CT------------------------
----------------------------------------------------TCTCGGC-----------CCCGGATATA
TATCACC--CACCCA------CCACACCAACACTGTCAGTTTCAGGGCCATCAACACCACCACTGATAACCGAC----CC
CCCAGCA----GCTACTTCCAGGATAGTGCTGCTTCCCACTACCAGTAGCTCCCACCTCCCAGCTAGAGTAGTTCG----
----AAGAAGCACCCGGCGCCTAGTCGGCCACCTCACTACTCGCCACCAAGAA-----AGAATGTGCTTGGAGTTCGGCT
CGTGCTTCGGCGGCCGGAGACGGGACGACTACGGCCGCAGAAGAGGAAAC---------GCCAACTGGT------CAGC-
-----------GCCGGCGTATC------------CGCAGCCGCCCACCGTCATCGTCCACGAGGCCGGGCACACGGCCTA
CCACGACGGCACACCGAAAGCCGAGCATGCCGA---CGCCGGCAGCCACGGCGGGTGCGCTTACTTCCAAGACAAGGCTG
GCAGCGAGACGCCGTCTAAGCTTCCCGCATGG---CAAAACAAGGTCGGCGACGACGCCGGCTACGGCGCGTACACATAC
ACGCCGCGCCACCATGAGGCTGCGGTTGA---------TCATAGGG------AGCAC---GCCGCCATGGAT---CACCA
CCAGTACCCAACCACTAGCGCCACT-----------C----------------------TC----G---TTAGGACTTAG
GATTAGCTATAGTACGC---------------------------------------------------------------
-CTCTGCTTCTGTTCTGTCCAGCAGCTC--TGTTTTGTTCTGTAGCTGTCTT-TTTTCCCC---CCTTCTCTTTCTCTGT
TTGGGTTTTGGTCAGTCGTCTTCCAATCTGCTGAAACTGAAAGGCACCTGGAGGAGTAGTGTATCA--TGCGTGAGAGGA
ACAGGAGGCTGTGGATTTTGACAGAGAGCCTCCATGATTTTTCCAG------------------------GAAAGCTTTT
GTTGGCAGATGGTTTTACTTTTACCAGTCTGTTTGTGTGGTGTAGTTGCTTGTAATTCAGCTGCAGCTGCTTTCGCCTTG
TATCATAC----TACATAATAAAGTGAAAGACAG-------CATTGCCAGATCTAAAGATGAGTCTCCATCTCTGTTTTC
CCTATGTGCATGTGGCTTCTCTGACTTCTGTAATTCACACACTTATCACTTGCCAAGAAT--------------------
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>chr3B_742
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------------------------------------------------------CT------------------------
----------------------------------------------------TCTCGGC-----------CCCGGATATA
TA------TCACCCA------CCACACCAACACTCTCAGTTTCAGGGCCATCAACACCACCACTG-CACTGAT----ACC
CACGCGGCCACGCTAGTTCGAGGATAGTGCTGCTTTCCACTACCAGTAGCCC-------AGCACACGCACACGAGGTAAA
CAAAAAGAAGCACCCGGCGCCAC----------TCA-------CCACCAAGAA-----AGAATGTGCCTGGAGTTCGGCT
CGTGCTTCGGCGGCCGTAGACGGGACGACTACGGCCGCAGCAGAGGGAACCCCGGCCAGGGCTACTGGTCGGAGCCGGT-
-----------GCCGGAGTACC------------GGCAGCCGCCCATCGTCGCTGACCACGAGGCCGGGCACAAGGCCTA
CCACGACAGCACGCCGAAAGCCGACCACGCCCA---TGCCGGCAGCCACGC------CGCCTACTGGCAAGACCAGGCTT
GCGGCGAGACGCCGCCGAGGCACCCCGCGTGGCACCACAACAAGGTCGGCGACGACACCGGCAACGGCGCC------TAC
ACGCCGTGCCACCACGAGGCTGCGGCTGA---------TCACAGGG------ACAACAACGCTGCCATGGAT---T----
-----ACCA--------------CC-------------------------------------------------------
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>chr3B_742
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------------------------------------------------------CT------------------------
----------------------------------------------------TCTCGGC-----------CCCGGATATA
TA------TCACCCA------CCACACCAACACTCTCAGTTTCAGGGCCATCAACACCACCACTG-CACTGAT----ACC
CACGCGGCCACGCTAGTTCGAGGATAGTGCTGCTTTCCACTACCAGTAGCCC-------AGCACACGCACACGAGGTAAA
CAAAAAGAAGCACCCGGCGCCAC----------TCA-------CCACCAAGAA-----AGAATGTGCCTGGAGTTCGGCT
CGTGCTTCGGCGGCCGTAGACGGGACGACTACGGCCGCAGCAGAGGGAACCCCGGCCAGGGCTACTGGTCGGAGCCGGT-
-----------GCCGGAGTACC------------GGCAGCCGCCCATCGTCGCTGACCACGAGGCCGGGCACAAGGCCTA
CCACGACAGCACGCCGAAAGCCGACCACGCCCA---TGCCGGCAGCCACGC------CGCCTACTGGCAAGACCAGGCTT
GCGGCGAGACGCCGCCGAGGCACCCCGCGTGGCACCACAACAAGGTCGGCGACGACACCGGCAACGGCGCC------TAC
ACGCCGTGCCACCACGAGGCTGCGGCTGA---------TCACAGGG------ACAACAACGCTGCCATGGAT---T----
-----ACCA--------------CCCTCGTCAGGTAC----------------------TA----G---CTAGTCGTTAG
GATTAGCTAGCAC----AGCATGGTGGCAGTTCATCCCATC-AACCCCTCCCTC-------TCGTTTCA-----------
-------------------------CTC--TGTTTTGTTCGGTAGCTCTGTCCTTTTTTTCCTGTTCTTG----TA-TGT
TTGGGGTTTGATCAGTCGTTTTCCAATCTGCCCAAACGGAGAGGCACAT----------------------------GGA
ACATGAGGCTTTGGATTTTGAGAGAGAGTCTCCATGT-------------------------------------------
-------------TTTACCTTTACCAGTGT---------GTGTAGTTGCTTGTAATTTAGCCGCAGCTGCTTTCGCCTTG
TATCATACATA------AATCAAGTGAAAGAGCG-------CATTGCCAAATCTC-AGATGC--------CTCTGTTTTC
GCTGTATGGTATTTTCCCCTTTCACTTGCCTCGCAAACATTGTGAATCACTGAGCAGCAGATC-----------------
----------------------ATCATCTACTGCTCGGAACGAGTATTTAACCAAAAACTACCACAATTCGCGGAAACGT
GACAGAAAACTACCACTTTACGTTTTTGTGCGAAAAACTACCACTTTTATCCTAAACCGTGGCAAAAAACTACCAACTTG
TTTAACTGCTCGGTTCGGCCGCGCTAAGCCCGAATCCGACCGGTTGGACCCACACATAAGCGGCGTAAAAAAGCAATCAG
GTCCCTATTTTTTTTAAAAAAAAGCAATCCAGTCCATGAAAGGGGACATGTGGCATGGCTGGCTGGCCACAGCCACGGCC
GGGGGCCGGCGAACATCCACCGCCGCACCAGCCTCCCGCCGTCGGCCTCCAGTCACCGCCGCACCGCCGCCCGGCCTAGA
CCCACCGCCGCACCGCCATGCCCGCGGCCCCCTCCTCCGCGCCGCTGCCCGTGGCGGCATGCCTGGCCGAGCCCAGTGGC
GCCGCGCGCCCGTGGCTGCGCCCCTGGACGCGCCCGTGGCTTGCTGCTGCTGCTCGCCATAGCTCTCGCTTGCCGTCCGC
AACTGCTGCTTGCTTCCGCCACCGCCGCTGCTTGCCGTTGCTCTCGCTTGCCATCGCCAACAGAGTCGCTGACGAGCTGT
GCCGGCTGGACCTGCACGGAGGAGCGGGAGGCGGGCGACGCAACTCGTTCCGCAGGCGGGACTCGCGCTCCTGCTGCTCC
TCGTCGAGGCGCGCCTGCTTGGCGGCGTCCGGCACCATGGCCACGCGCGCCCGCTGCACCTGCACGGAGGAGCGGGAGGC
TCGTCGGCGGACGGGATGCTTGCTTATCTAGGGACGACCACCCGCCGCCGGGCCTCGACAACGACGTGGACTCGCCGCAG
CAGCAGCCGTTCCCGTCCGCCGGCGGCAAGCGGCTGGGGAAGGAGGAGGCCGGCGACGAGGAGGAGAAGGAGGCGGAGGA
CCCGATTGCATTTTTAGCCTATTTATGTGTGGGGTCGGGCAGTCAGATTCGCGTTTAACCCAGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGCGAGAGGC
TATGGAGCAGGAGTTTCATGCTCTTCTTCGTAACAAGACATGGACTCTCGTTCCTCCACCACCACGGGTAAATGTTATTG
ACTCAAAATGGGTATTCAAAGTGAAGAAGCATTCGGATGGATCTATTGAGCGTTACAAAGCGCGACTTGTTGCTCGCAGT
TTTCGGCAGCGTCATGGTCTTGACTATGAGGACACCTTCAGTCCTGTCGTCAAGCCTACCACTATTCGGCTTCTTCTCTC
CATTGCTGTTTCTCGTGGTTGGTCACTTCGTCAACTTGATGTGCAGAATGCTTTTCTACATGGATTTTTGGAGGAAGAGG
TTTATATGAAACAGCCGCCTGGTTTCTCTGATCCTGATCGTCCTGACTATATCTGTCGTCTTTCCAAAGCACTATATGGT
TTGAAGCAAGCTCCTCGTGCCTGGCATGCCCGCCTTGCCTCTGCCCTTCGTGCTCATGGGTTTGTGCCGTCTACTGCTGA
CACTTCGTTATTTCTTCTACAAAAGCCAGAAGTCACTATGTATCTTTTGGTATATGTCGATGATATTATCCTTGTCAGCT
CTTCTCAGTATGCTGTTGATGCTCTTGTCTGCTCTCTTGGTGCTGATTTTGTGGTCAAAGATCTTGGGAAGCTTCACTAC
TTTCTTGGAGTTGAGGTCACTTCTCGTGCTACTGGTCTTGTCCTTACGCAGAAGAAGTACTCCTTGGAGTTGTTACAGAG
AGCTGGCATGCTGAAGTGCAAACCGACCACCACACCCATGTCTTCTACCGACAAGATAACAGCTGTTGATGGTGAGCTTT
TGTCTCCTGCGGATGCCACAGAGTACAGGAGCATTGTTGGTGGACTTCAGTACTTGACGATCACGAGACCAGATATCTCT
TATGCTGTTAACAGGGTTTGTCAGTATCTTCAGGCTCCCAGAGATACTCATTGGGCTGCTGTTAAACGCATTCTTCGTTA
TGTTCAGTTCACCCTGACATTTGGTATGCATATTCGGCCGACTTCCTCTCGGGTCCTTTCGGCCTTCTCTGATGCAGATT
GGGCTGGTAGCCCAGATGACAGGCGATCCACGGGGGGTTATGCAGTATTCTTTGGCTCTAATTTGATCGCCTGGAGTGCT
CGGAAACAGGCTACTGTGTCACGTAGCAGTACTGAAGCTGAGTACAAGGCTGTGGCTAATGCTACTGCAGAGATTATTTG
GGTGCAGCCTTTGCTTCAGGAGTTGGGTTTGTCTCAACCACAGCCTCCTATTCTTTGGTGTGATAACATCGGTGCTACAT
ACCTTTCTGCAAATCCAGTATTTCATGCCCGAATGAAACACATTGAAGTTGACTATCACTTTGTACGGGAACGTGTATCA
CAGAAGCAACTCCAGATCAAGTTTATCTCATCTAAGGATCAACTTGCAGACATCTTCACTAAGCCTTTACCGCTGCCACA
GTTTGAGGCTTGTAGGCGCAATCTTACCCTTCTCAGTTCTTTAAAGATTGAGGGAGGGTGTTAGACTATGTATAGCTTCT
GTACCTATGTACGTATATGGTACATATTGTAACACAACCATTATATATAATGAAATAAGCCACCCCTAGAGGGTTGTGCT
GGTTCCCCAAAACTTATTGTCTTACACGCGCCCAGCACGAGCTCTTCTCGGCCCCGGATATATATCACCCACCACACCAA
CACTCTCAGTTTCAGGGCCATCAACACCACCACTGCACTGATACCCACGCGGCCACGCTAGTTCGAGGATAGTGCTGCTT
TCCACTACCAGTAGCCCAGCACACGCACACGAGGTAAACAAAAAGAAGCACCCGGCGCCACTCACCACCAAGAAAGAATG
TGCCTGGAGTTCGGCTCGTGCTTCGGCGGCCGTAGACGGGACGACTACGGCCGCAGCAGAGGGAACCCCGGCCAGGGCTA
CTGGTCGGAGCCGGTGCCGGAGTACCGGCAGCCGCCCATCGTCGCTGACCACGAGGCCGGGCACAAGGCCTACCACGACA
GCACGCCGAAAGCCGACCACGCCCATGCCGGCAGCCACGCCGCCTACTGGCAAGACCAGGCTTGCGGCGAGACGCCGCCG
AGGCACCCCGCGTGGCACCACAACAAGGTCGGCGACGACACCGGCAACGGCGCCTACACGCCGTGCCACCACGAGGCTGC
GGCTGATCACAGGGACAACAACGCTGCCATGGATTACCACC---------------------------------------
---------------------------------------------------------
>chr3B_742
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------------------------------------------------------CT------------------------
----------------------------------------------------TCTCGGC-----------CCCGGATATA
TA------TGACCCA------CCACACCAACACTCTCAGTTTCAGGGCCATCAACACCACCACTG-CACTGAT----ACC
CACGCGGCCACGCTAGTTCGAGGATAGTGCTGCTTTCCACTACCAGTAGCCC-------AGCACACGCACACGAGGTAAA
CAAAAAGAAGCACCCGGCGCCAC----------TCA-------CCACCAAGAA-----AGAATGTGCCTGGAGTTCGGCT
CGTGCTTCGGCGGCCGTAGACGGGACGACTACGGCCGCAGCAGAGGGAACCCCGGCCAGGGCTACTGGTCGGAGCCGGT-
-----------GCCGGAGTACC------------GGCAGCCGCCCATCGTCGCTGACCACGAGGCTGGGCACAAGGCCTA
CCACGACAGCACGCCGAAAGCCGACCACGCCCA---TGCCGGCAGCCACGC------CGCCTACTGGCAAGACCAGGCTC
GCGGCGAGACGCCGCCGAGGCACCCCGCGTGGCACCACAACAAGGTCGGCGACGACACCGGCAACGGCGCC------TAC
ACGCCGTGCCACCACGAGGCTGCGGCTGA---------TCACAGGG------ACAACAACGCTGCCATGGAT---T----
-----ACCA--------------CC-------------------------------------------------------
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>chr3B_742
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------------------------------------------------------CT------------------------
----------------------------------------------------TCTCGGC-----------CCCGAATATA
TATCACCCTCACCCA------CCACACCAACACTGTCAGTTTCAGGTTCATCCACGCCACCACTGGCACTGATACCCATC
CCCAGCA----GCTACTTCCAGGATAGTGCTGCTTCCCACCACCAGTAGCCC-------AGCACG----CAGGAAGTCAA
CAAAAAGAAGCACCCGGCGCCAG----------TCA-------CCACTCGCCACCTATAGAATGTGCTTGGAGTTCGGCT
CGTGCTTCGGCGGCCGCAGGCGGGACGACTACGGCGGCCGCGCCCGCAGCAGAGGGGGCGGCTACTGGTCAGCGCCGGT-
-----------GCCGGCACCGGTGTACCAACAGGAACAGCCGCCCGCCGTCGCC---------------CACGAGGCCTA
CCACGAAGGCGCGCCGAAAGCCGACCACACCGACGCTGCCGGCAGCCACGC------CGCCTACTTGCAAGACAAGGCTG
GCAGCGAGACGCCGCCGAGGCACCCCGCATGG---CACAACAAGGTCGCCGACGAC------------GCC------TAC
ACGCCGCGCCCCCACGAAGCTGCTGCCCCAGATCACAGTCACAGGG------ACAAC---GCCCCTATGGATTACTACCA
CCACCACCA--------------CCCTCGTCAGGTAC----------------------TA----GCTACTAGTCGTTAG
GATTAGCTAG----------------------------------------------------------------------
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>chr3B_742
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------------------------------------------------------CT------------------------
----------------------------------------------------TCTCGGC-----------CCCGAATATA
TATCACCCTCACCCA------CCACACCAACACTGTCAGTTTCAGGTTCATCCACGCCACCACTGGCACTGATACCCATC
CCCAGCA----GCTACTTCCAGGATAGTGCTGCTTCCCACTACCAGTAGCCC-------ATCACG----CACGAAGTGAA
CAAAAAGAAGCACCCGGCGCCAG----------TCA-------CCACTCGCCACCTATAGAATGTGCTTGGAGTTCGGCT
CGTGCTTCGG--GCCGCAGGCCGGACGACTACGGCGGCCGCGCCCGCAGCAGAGGGGGCGGCTACTGGTCAGCGCCGGT-
-----------GCCGGCACCGGTGTACCAACAGGAACAGCCGCCCGCAGTCGCC---------------CACGAGGCCTA
CCACGAAGGCGCGCCGAAAGCCGACCACACCG---------------ACGC------CGCCTACTTGCAAGACAAGGCTG
GCAGCGAGACGCCGCCGAGGCACCCCGCATGG---CACAACAAGGTCGCCGACGAC------------GCC------TAC
ACGCCGCGCCCCCACGAAGCTGCTGCCCCAGATCACAGTCACAGGG------ACAAC---GCCCCTATGGATTACTACCA
CCACCACCA--------------CCCTCGTCAGGTAC----------------------TA----GCTACTAGTCGTTAG
GATTAGCTAG----------------------------------------------------------------------
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>chr3A_787
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--------------------------------CTGTCAGTTTCAGGGCCATCAACACCACCACTGA----GATACCCACC
CCCAGCA----GCTACTTCCAGGATAGTGCTGCTTCCCACTACCAGTAGCTCCC-------AGCTAGAGTAGTTCG----
----AAGAAGCACCCGGCGCCGAGTCGGCCACCTCACTACTCGCCACAAGGGA-----AGAATGTGCTTGGAGTTCGGCT
CGTGCTTCGGCGGCCGCAGGCGGGACGACTACGGCCGCAGCAGAGGGAACCACGGCCACGGCTACTGGTCGGAGCCGGC-
-----------GCCGGAGTACC------------GGCAGCCGCCCATCGTCGCCAACCACGAGGCCGGACACAAGGCCTA
CCACGACAGCAC---------CGACCACGCCCA---CGCCGGCAGCCACGC------CGCCTACTTGCAAGACCAGGCTG
GCGGCGAGACGCCGGCGAGGCATCCCGCGTGG---CACAACAAGGTCGGCGACGACACCGGCAACGGCACC------TAC
ACGCCGACCCACCACGAGGCTGCGGCTGA---------TCACAGGG------ACAACAACCA------------------
--------------------------TCGTCAGGTAC----------------------TA----G---CTAGTCGTTAG
GATTAGCTAGCA------------TGGCACTTCATCCCATCAAATCCCTCCCTC-------TCCCTAAACACTAC-----
----------------------CGCCTACGTCTTGTATTCAGTAGCTCTGTC--TTTTTTCCTCTTCTTG----TTCTGT
TTGGGTTTTGGTCAGTCGTCTTCCTATCTGCCGTAACGGAAAGGCACCTCGAGCATAGAGTGTGTCTGAGACTGAGAGGA
ACCGGAGGCTTTGGATTTTGACAGAGAGCTTCCATGTTT-GTACAGCAGAGAGAAGAACCAGCAGCTCCAGAAAGCTTTT
GTTGGCAGATGGTTTTACCTTTACCAGTCAGTTTGTGTAGT-----TTCTTGTAATTTAGCTCAAGCTGCTATCGCCTTG
TATCATATACG---TATAATCAAGTGAAAGAAAG-------CATTGCCAAATCTC-AGATG-------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-----------------------S---------S-S-S-SS-SS------------
-S------S----S--------------S-S------S-SS-------------------------S--S----------
--S----------------S----------------S--------------S----------------------------
-------S-----------------------S-----SS---SSSS-SS------------------S--------S---
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----S-----------------SSSS--SSS-
SS------------------SSSSS--S-------------S--SS-SSSSSSSSSS-SS-S--S-SSSS----------
----S---S-SSS--SSS------S----SS-S-SSS-S-SSSSS--SS-S-SS--------------------------
----------------------------------------------------------------------S---------
---------------SSSSSS----------------------------------------S------------------
---------------------------------------S---------S----SSS-----------------------
--S----------------------------------S------------------------------------------
----------------------S------------------------S----S---------------------------
--------------------------------------------------------------------------S-----
---S----------------------------------------------------------------------------
-------------------------S-------------S-----------S---S--S----------S----------
--S---------------------S-----------------S---SSSSSS----------------------------
-------------------S-SS------SS----------------------------S-SSSS---------------
--------------------------------------S-----------------------------------S-----
------------------S-S------------------------S--------S-------------------------
-----------S-----------------------------SS-------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------S-----------------
-S------S---------------------------------------S--------S---------------------S
-----SSSS---------S---S-----S--S------S-----S-----S--------SS--SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----S--------------SSSSS-SSSSS--SS-SSSSS-SS-S-SS-SSS-SSSSS
S-S-S-S-S-S--SSS-SS-SS-SSS-SSSSS------------------------------------------------
--------------------------------------------------------------------------------
--------------SS-S----S--S--SSSSSSSS-SS-SSSSS-S-SSSSS--S-SSSS-S-SS-SSSSS--SSSSSS
SSS-----------------------------------------------------------------------------
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------------------------------------------------S------SS-SS---S-SSSS-S---SS----
S----SSSS--SSSSSSS-SSS-SSS--SSS--SS-SS-SSSS-SS--SS--S-S-SSS-S-S-SSSSSSS-S-SSSS-S
--S---SSSSSSSSSSSSSS-SS-SS-SS-S-S-SS--SSSS-SS-S-S-SSSSSSSSSS-SSS----S--S-SS-SS-S
--SS-SS-SSSSSSS-SS-SSSSS-SSSSSSSS-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_733
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-------------------------------------------------------------------------CCGCAAA
CAGCAACAGCTAG-------------------------------------------------------------------
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>reverse_5764
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---CGTCCCTGTCCTCCTCCTTA---------------------------------------------------------
---------------------------------------------------------
