>input_sequence_83328
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-------------------------------------------ATGGAGCTCCGCCTCGGTTGCAATGGAGCTTCACCGC
AGCTACAAATGGAGCGCATCCGAGATCATTGGAGCTCTGCCGCGGCTGCAATGGAGCTCCGCCTCGGTTGCAATGGAGCT
TCACCACAACTACAATGGAGCGCGGCCAGGGCTGTAATGGAGCGCCGCCGTGGCTGCAATGAAGCTTCACCGGAGACGTC
GTCATGCGGTGTCGATGCTTTTTTGTGCTTGGTGTGGCCATGGCCATGGCTGCAATGGAGTAGCACGCTGGTGCTCCCGG
AGCGCGCCCCA-ACGATGCAATGGAGCGCTGCCGGTGATGCAGCGATCGGCGGCGGCTCTTGA-----------------
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>chr2D_1_TraesCS2D01G441200
TCGCAGACGTAGTAGCCGGGGGGCGTGCGGTCAGTGATGTTGAGCGTGACGAAACCGTTGGCGTCGGGGCTGGAGGGCGG
CGACGGGGGAGGGCTCGGGGCCGGGGGCGTGGAGAGGAGGAGGAGGCCGGAGGGGTCGACGGCGAGGACCATGGGGTACT
CGTCCTTGCCGGGCGAGACGCGCAGGGGCACGGTGAGCAGGGTGACGCGCGGCGGCGCAGCTAGCGCGAGCGCGTGGTCG
GCGCCGGCGGGAGGTCCTCGGCAGCTGGTGGCTGGTGGTCGGCGTCGCCATGGGCAATGGAAGATAAGATGAGGAAAGAA
CGGGTGGAGGAGCGGGCGTGTGAAAGAGATAAGGCTCGACGGGAAAGCGGCGGACTAGCTGACGCATGGGACGCGTGTCG
CGTAGGGGACCCGACTTATGCGACGTTGTTTTCATCCGGTTGATTTAGATACTTTTCCTATTGTTTAAAATCAACCGGAT
GAAAACTGTCGCTTGTAAGCCTCCCTCTCCGCGCTCCACGTGTCGCTGTGGGGCTCGTCCACCGCTCCCACCCCCTCCAT
CTTATCTTCTCCCCGAGCGTATCCTCCACCCGTTTCCTTTTCCCCCTTTTCTAGTTCGTCAAGCGGCAAAGGAGAGGCAG
CGGAGACGCCTGATTCATCCTCACGCCGCCGGGCAGTAGAGCACCAAGCGAGGTTGTTTGAAGTT--GTCCTGGCTGCAA
TTGAAGCGCCACCGAAGCTACATGGCAACATTCCCGCGTTGCATCGCAGCATCCGCCGTCATCGCCACGCACTGCGTCGT
AGCTCCTGCCATGGCCGCCGCATGTTGCGTCGCAGCTTCCGCTATGGCCGCCCCATGCTGCGTCGCAGCATCCGCCGTCG
TCGGCTGCGCTGTAACGGAGTGCACCCAGGGCTGCAAGGGAGCACAA-CTGGGGCCATTGGAGCTCCGCCACGGCTGCAA
TGGAGCTCCACCGCATTTGCAATAGAGCACCGCCGTGGCCGCAATGGAGCTCCGCCTCGGTTGCAATGGAGCTTCACCGC
AGCTACAAATGGAGCGCATCCGAGATCATTGGAGCTCTGCCGCGGCTGCAATGGAGCTCCGCCTCGGTTGCAATGGAGCT
TCACCACAACTACAATGGAGCGCGGCCAGGGCTGTAATGGAGCGCCGCCGTGGCTGCAATGAAGCTTCACCGGAGACGTC
GTCATGCGGTGTCGATGCTTTTTTGTGCTTGGTGTGGCCATGGCCATGGCTGCAATGGAGTAGCACGCTGGTGCTCCCGG
AGCGCGCCCCA-ACGATGCAATGGAGCGCTGCCGGTGATGCAGCGATCGGCGGCGGCTCTTGAAGATGTGTTGCAGCGCT
CACCGGCGGCTTCGGTGCCGCGAGGTCGCAGGACGGATGTGCCAAGGGAGCTGCGTTGCTTTGGTGGAAGGCGATCAGAA
GAGGAAGCCGTGAGGAGGGCTGTGTTGCTTGGACGAACGGCCACCCAGCGCCAAATCGGACGGCTACGCAGGCGGATGAT
TTCTTAGAGAAATCATCCGGCTGATTTGTAGCAGTCGCCATATAAATATCAGTTTTCAATTGAGTTTTCCACGCTAGCTC
ATCTCCCCCACCTGACCT-AGACCTAGCAAGGTTTTCTT----GATCAGATCAGGCAAGCATCTCATCTCATCTCGGCGA
CCAGCCATGTCGTCCGTCGCCAGCCCCGGTCGTCTGTCGCGGTCGGCCTCGAGGATCGTGGCCAAGCCAGCGGACGGGTT
CCATCTCCTGCGCATCGACGGCTACTCGTAGACCAAGACGATCCTCCCCGGCCAGAAGCTCTCCTGCCAGGAGTTCCACG
TCGGCGGCCACAACTAGCGCATCGACTACTACCCCAACGGCCG-------------------------------------
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-----------------------------------------------------------------------------CGA
CGAATC---CAACTCCGGCACCATCTCCGTCTATCTCCAGCTGACCCACGCCACCCAGGGCCCCCAGCAGGCGCGGTACA
AGTTCAACCTGCTGGACCGGGCCGGCGTCCCGGCGTACGAGCTCCCGGCTGAGACAGGCTCCTTCACCAGCGTCTTCCCA
AACGTCCACGCTCCCTACAACCCCGCCATCGGCGACGGCGACGGCGAGGAACCAG---GGCCAGGATGCGGCCATGACGA
GTTCATCCGGAAGGAAGAGCTGGAGAGGTGCCGCGGGGATCTGATCCGTGACTACTGCATCATGATCCGGTGCGACGTTG
GCGTCACGCAGATTAACCTTTCTTGGCTGGCGCAAGACGAAATTATCAGGGACG------GGCAGCACTACGCAC---CC
CCGCTGCACGACCTGTATGGCCCTCCTCGCCGGCATCCGCACCAGCGCCAGCATCGTCGTGCGGACGACGACGAGTA
>chr5B_463
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--------------------------------------------------------------GTTTAAAATCAACCGGAT
-AAAACTGTCTCTTGTAAGCCTCCCTCTCCGCGCTCCATGTGTCGCTGTGGGGCCCGTCCACCGCTCCCATCCCCTCCAC
CTTATCTTCTCCCCGAGCGTATCCTCCACCCGTTTCCTTTTTCCCCTTTTCTAATTCGTCAAGCGGCAAAGGAGAGGCAG
CGAAGATGCCTGATTCATCCTCACGCCGCCGGGCAGTAGAGCACCAAGCGAGGTTGTTTGAAGTTTCGTCCTGGCTGCAA
TTGAAGCGCCACCGGAGCTACATGGCACTATTCCCGCGTTGCATCGCAGCATCCGCCGTCATCGCCGCG-----------
---------------------------------------------------------------CACTGCATCCGCCGTCG
TCGGCTGTGCTGTATCGGAGTGCACCCAGGGCTGCAAGGGAGCACAAT-TGGGGCCATTGAAGCTCCGCCACGGTTGCAA
TGGAGCTCCACCGCGTTTGCGATAGAGCACCGCCGTGGCC----------------------GCAATGGAGCTTCACCGC
AGCTAC-AATGGAGCGCATCCGG-----------------------------GGAGCTCTGCCTCGGTTGCAATGGAGCT
TCACCACAGCTACAATGGAGCGCGGCCGGGGCTGTAATGGAGGGCCGTCGTGGCTGCAATGAAGCTTCGCCGGAGACGTC
GTCGTGCGGTGTCCTTGC-TTTTTGTGCTTGGTGTGGTCATGACCATGGCTGCAATGGAGCAGCACGCCGGTGCTCCCTG
AGCGCGCCCCCGACGATGCAATGGAGCGCTACCGGGGATGCAGCGGTCGGCGGCGGCTCTTGAAGATGTATTGCAGCGCT
CGCCGGCGGCTCCGGTGCCGCGAGGTCGCAGGACGGATGTGCCATGGGAGCGGCGTTGCTTTGGTGGAAGGCGATCAGAA
GAGGAAGACGTGA-GAGGGCTGTGTTGCTTGGACGAACGGCCACCCAACGCCAAATCGGACGGCTACGCATGCGGATGAT
TTCT----------------------------------------------------------------------------
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>chr7A_802
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---TCCCGCCATGGCCACCGCATGCTGTGTCGCAGCTCCCGCCATAGCCGCCGCATGCTGCGTCACAGCATACGCCGTGG
TCGGCTGTGCTGCAACGGAGTGCACTCAGGGCTGCAAGGGAGCACAAACTGGGGCCATTGGAGCTCCGCCAAGGTTGCAA
TGGAGCTCCACCGCGTTTGCAATT----------------------GAGCTCCGCCTGGGTTGCAATGGAGCTTCACCGC
AGCTAC-AATGGAGCGCGCCTGGGATCATTGAAGCTCCGCCGCGGCTGCAATGGAGCTCCGCCTCGCTTGCAATGGAGCT
TCACCACAGCTACAATGGAGTGCGGCCGGGGCTGTAATGGAGTTCCTTCGTGGCTGCAATGAAGCTTCGCCGGAGACGTC
GTCGTGCGGTGTCGATGCTTTTTTGTGCTTGGTGTGGCCATGGCCATGGCTGCAATGGAGCAGCACGCCGGTGCTCCCGG
AGCGCA-CCCCGACGATGCAATGGAACGCTAACGGGGATGCAGCGGTCAGCGGCGGCTCTTGAAGATGTGTTGCAGCGCT
CGCCGGCGGCTCCGATGCCGCGAGGTCGCAGGACAGATGTGCCATG-GAGCCGCGTTGCTTTGGTGGAAGGCGATCAGAA
GAGGAAGACGTGA-GAGGGCTCTGTTGCTTGGACGAACGGCCACCCAAAGCTAAATCGGACGGCTACGCATGCGGATGAT
TTCTTAGAGAAATCATCCGGCTGATTTGTAGCAGTCGCC-----------------------------------------
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>chr4D_1556
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---------------------------------------ATATAACTATCAGTTTTCAATAGAGTTTTCCACGCTAGTTC
ATCTCCCCCACCTGACCT-AGACCTAGCAAGGTTTTCTCGATCGATCGGATCAGGCAAGCATCTCATT-----TCGGCGA
CCAGCCAT---GTCCGGCGCCGGCCCCGGTCGTCTGTCGCGGTCGGCCTCGAGGATCGTGGTCAAGCCAGCGGACGGGTT
CCATCTACTGCGCATCGACGGCTACTCGCAGACCAAGAAGATCCTCCCCGGCCAGAAGCTCTCCTCCCAGGAGTTCCAC-
----CGGCCACAACTGGCG-ATCGACTACTACCCCAACGGCCGGACGTAAGTGTGTCAGATTGCTAAATTGTTTTATTAT
TCCTACAATATAAACTAGGGGATATATAGGGGGTAACACTGTCCCTATAAATTCCTTTTTCCTTTTCTTTTTTGTCGGGT
TTCGATGGCACTCAAGCAGCCTCACTACTTCGATCTCAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCTC
TTTCACTAGTAGTATGGGGAAGGAGTGTTCCCCCTTATTTACCCCCTTGCCTTGATGGAAATTGGCTTCGCTGCGCCCTG
AATAATCAAAAAGCTGCATGAGAAGATTCATCTCATTTTGGCGAGAGGGAGCGCAACGGCTTTCGCGCTCATCCCTTGCT
TCAAAACTACAGGTTTTAGCCCTCCGTTTGCTGGTCGCCAAAGACGAGAGCTTCGCCTTTGGAAGCGCCAGTAGCGTAGG
GTGACCGGGCCAGCCGAGCCCCTCTGAATTAGTTGGCGGCTTTGATGACTCGACGGTGAATATTAAGGAAAGGAGAGCGA
CGAGTC---CAACTCCGGCGCCATCTCCGTCTGCCTCCAGCTGACTCACGCCACCCAGAGCCCCCAGCAGGCGCGGTACA
AGTTCAGCCTGCTGGACCGGGACGGCGTCCCGGCGTACGAGCTGGCGGCCCAGACAGGCTCCTTCACCGGCGTCTTCCCA
GACGTCCACGCTCACTACAACCCCGCCATCGGCAACGGTGACGGCGAGGAATCAG---GGCCAGGATGCGGCCACGACGA
ATTCATCGCGAAGGAAGAGCTAGAGAGGCGCCGCGGGGATCTGATCCGCGACGACTGCATCATGATCCGGTGCGACGTCG
GCGTCACGCAGATTAACCTTTCATGGCTGGCGCAAGACGAAATTATCAGGGACG------GGCAGCACTACGCAC---CC
CCGGTGCACGGCCTGTATGGCCCTCCTCGCCGGCATCCGCACCAGCGCCAGCATCATCGTGCGGACGACGACGAGTA
>chr4B_1570
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-----------------------------------------------------TTTCAATCGAGTTTTACACGC----TC
ATCTCCCCCATCTGATACAAGACCTGGCAAGGTTTTCTCTCTGGATCGGATGATTCAACCATCTCTATCGGAACAGGTGA
----CCAT---GTCCGCCGCCGTGCCCGGTCGTCCGTCGCGGTCGGCCTCGAGGATCGTGGCCAGGCCAGCGGACGGGTT
CCACCTCCTGCGCATCGACGGCTACTCGCACACCAAGACGGTCCTCCCCGGCCAGAAGCTCTCCTCCCAGCCCTTCTACG
TCGGCGGCCACAGCTGGCGCGTCGACTACTACCCCAACGGCCG-------------------------------------
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-----------------------------------------------------------------------------CGA
CGAGTCCAGCAACTCCGGCGCCATCTCCGTCTACCTCCAGCTGACCGACCCCACCAGGAGCCCCCAGCAGGCGCGGTACA
AGTTCAGCCTGCTGGACCGGGACGGCGTCCCGGCGTACGAGCTCCCGGCCGAGACAGGCTCCTTCACCGGCGTCTTCCCG
AACGTCCACGCTCCCTACGGCCCCGCCATCGGCGACGGCGACGGCGAGGAACCAGCTGGGCCAGGACGCGGCCACGACGA
GTTCATCTTGAAGGAAGAGCTGGAGAGGCGCCGCGGGGATCTGATCCGCGACGACTGCATCATGATCCGGTGCGACGTCG
GCGTCACGCAGGTCGACTTTTCCTGCCTGGCGCAAGACGAGATCGTCGGGGACGACGACGGGGCGCACTACGCGGCATCC
CCGGTGTACGGCCCGTATGGCCCTCCTCGCCGGCATCCGCGCCAGCGCCAGCGTCGTCGTGCGGACGACGACGAGTA
>chr4B_1683
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-----------GTCCGCCGCCGTGCCCGGTCGTCCGTCGCGGTTGGCCTCAAGGATCGTGGCCAGGCCAGCGGACGGGCT
CCACCTCCTGCGCATCGACGGCTACTCGCACACCAAGATGGTCCTCCCCGGCCAGAAGCTCTCCTCCCAGCCCTTCTACG
TCGGCGGCTACAGCTGGCGCGTCGACTACTACCCCAACGGCCG-------------------------------------
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-----------------------------------------------------------------------------CGA
CGAGTCCAACAACTCCGGCGCCATCTCCGTCTACGTCCAGCTGACCGACCCCACCAGGAGCCCCCAGCAGGCGCGGTACA
AGTTCAGCCTGCTGGACCGGGACGGCGTCCCGGCGTACGAGCTCCCGGCCAAGACAGTCTCCTTCACCGGCGTCTTCCCG
AACGTCCACGCTCCCTACGGCCCCGCCATCGGCGACGGCGACGGCGAGGAACCAGCTGGGCCAGGACGCGGCCACGACGA
GTTCATCTTGAAGGAAGAGCTGGAGCGGCGCCGCGGGGATCTGATCCGCGACGACTACATCT---TCCGGTGCGACATCG
GCGTCACGCAAGTCGACTTTTCCTGCCTGGCGCAAGACGAGATCGTCGGGGACG------GGGAGCACTACGCGGCATCT
CCGGTGTACGGCCTGTATGGCCCTCCTCGCCGGCATCCGCGGCAGCGCCAGCATCGTCGTGCGGATGACGACGAGTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
S---------S---------------------------S---------------S---------------S--------S
-----------------------------------------S-----------S--------------------------
--S---S-------------------------------------------------------------------------
--------------S------------SS-------------------------------------S--SSSSSSSSSSS
SSS---S---------S-------S--S---------S----S--S------S-----------S---------------
-------S------------------------------------------------------------------S-----
--------------S-------------------------SSSSSS-----------S----------------------
------S---------------S--------S-----S------------------------------------------
--------S------------------S--------------S----S--------------------S-----------
---S--------------------------------------------------------S-------S-----------
----------S-------------------S----S---------S----------------------------------
-S---------S--------------------------------S------S----------------------------
-------S-----S---------------------------------S----------------------S---------
---------------------------------------------S--------------S----------------S--
--------------------------------------S--------S-------------------SSSSSS-------
--------SSS-----S----S----------------------------------------------------------
----------------------------S------------------------------------S--------------
---------------S----------------------------------------------------------------
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---S---------------S-------------S------------------------S---------------------
------S--------------S---------------------------S------------------S-----------
--------------------------------------------------------------------------S-----
-------SS-------------------S-------------------S---S-------------------------S-
----------------------S---------------------------------------------------------
---S------S------------------------------------------------------------------
>forward_330
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----------------------------------------------------------------------GAGGAAAGAA
CGGGTGGAGG----------------------------------------------------------------------
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>reverse_2648
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-------CGGAAGGAAGAGCTGGAGAG-----------------------------------------------------
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