>input_sequence_83287
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---------------------------------------------------------------------------ATGGA
GTTCAAGCCGAAGGCGACCGTGTGCGCGGTGATGCTGGTGCTGCTCCTGCTTTCCTCATGTGCGTAAGCCTGAGCGGCCG
CTCGCAGACTTATTAATTTGCTGCTGCTTATGGTTATGGACTAACGC-TTGTGGCCGGCCGGGACATTTTTTTTCAGAC-
--GACAGCGGCGGCGTCGGCGTGGCGGAGGCGCGCATTTGCACGGGGAAGAGCCAGCACCACTCGTTCCCGTGCATCTCG
GACAAGAGCTGCACCAAGACGTGCCTCAGCGAGCACGGCGCAAAATGGACGGCCGGCTACTGCAAATTCAGGCGCTGCAC
CTGCCAGAGGGAGTGCTAG-------------------------------------------------------------
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>chr5B_1_TraesCS5B01G329200
AGTCGGCACGTAGGTAGGTACCCACGAGACGGTGGTCGCG----------------------------------------
-----------------------------------------------------GGGTAGTCGGCGGGTAGAGCTCGATTG
CCA------GAGGGAGCGCGCAGGGTAGTCGGCGGGTAGAGCCAGATTTCCAGGGCACGAGAGAGCGCGCAGGTTAGTCG
GCGGGTAGTTAGGACCGCCGAGGTAGTAGATCGGCGGGCTGTCTTGGGTTCGTGGCTCCTCCACAGGCGGCGTGGGCTTG
CATGCAGGACAGCGCGCGGCGAGCTCTGCCCTACCGCCCACCGGTGCGACCACGGATCGGTCGGCCGATGCATCACGGTG
GGGGTCAAGGGCAGGCAGTCGTGTAGACGATGGAAGATCGTCTCGGCCTCTCGGGCCAGTATCTCAGTCAAATGGCTTGC
GTTTTTCATGTAAAAACACATGTAATTTCGTTCACTGCTTTACCTTATTATCAGATTTTGAAGAGA--CTGCTTTTGCCG
GAGATTATTAGGGAATTGGAGGAATACGCATGCATGGCTCATGCCAAGTTTTTGTCTGGCTTGTAATGCGGGATAGGTG-
TTGGGACTTGAACGGCGAGCGGCGCAGCCTTGCGAGACCTCCACGCTGAATCCTTTTTGCGACCAGGCATGAACTCGAGA
GTTTTGAGATCATTGATCGTCTCCTAGTCCAGCGCCCCTTCGTCACCAGCAGGGAAGTTTGGTTCGAATTCTTTCAAACC
AGAGTCCAGAGGTGCGACTCCTCTCACCCC---CAGCATCCAGACGCACGCTGAGTTGGAAAAAGGAGCTCAACCACACG
GCCTTCCAGCCCGACGGGTGGCACGCTA----CATGCAGCCCGCCTGCCACGAATACACCTGCATGCATGCACGGCAGCC
CGCTCCTCCGGCCCAAACTCCCTATAAGT-AGAGAGCCTCTCTTCCTGGTAACAACAAACACGGTCGCCTGGATCAGAAG
CCCTAGCTTGT-TCCACCTAAAGAGAACC--AACGGCT-TTGCTCCATCCACCCACCTACCCCC-ACAGAAGCAAATGGA
GTTCAAGCCGAAGGCGACCGTGTGCGCGGTGATGCTGGTGCTGCTCCTGCTTTCCTCATGTGCGTAAGCCTGAGCGGCCG
CTCGCAGACTTATTAATTTGCTGCTGCTTATGGTTATGGACTAACGC-TTGTGGCCGGCCGGGACATTTTTTTTCAGAC-
--GACAGCGGCGGCGTCGGCGTGGCGGAGGCGCGCATTTGCACGGGGAAGAGCCAGCACCACTCGTTCCCGTGCATCTCG
GACAAGAGCTGCACCAAGACGTGCCTCAGCGAGCACGGCGCAAAATGGACGGCCGGCTACTGCAAATTCAGGCGCTGCAC
CTGCCAGAGGGAGTGCTAGGGCAGACGCTCCGCGCGGCGAGCTCCACCACCCCCGCCC-GTCCATGGCGCCGCCAGTCAC
CTATGTA-----------------TC-TTAACTACCATGTACCCACTCGCCGCCTCTGTCGGGTGATGTAATAAAACGTG
GCGCGC--ACCCGCCGGCGCGTCACCGGTGTACGTAGCATGATGCATGCCACGCGTTGCTTCCAGTGATAAAATCAATGG
ATTAC------------------TCGTACGATCTCTTG-CGTGCTCGGTAGCATGGAAAAATATCTCCACGAAATTTCTC
GAAATGGTTCTCGCTGAACGTTGACGTCTGA------GATGAAGGCGGCCAGAGCTAGCGGCACCCTTGGAGGCTTGGCC
TCCTCCCCTGCTCTCATTTC------AGTCATTTGTTCTGCACTCACAGAATATTACGTCAATTAACAACTCAAACTAAA
ATATTAACCACTCAACCAAAATATTCCATCCACCTTCAGGGTTAGACCCCGAAATTACATTACAAAAACAGTATAAAGCA
GATACCTACGACTACGAGCCTTCACAGCGTTTTGAGTCCCTCTGCCATCGGATCGCTCTAACCTTCACAACATTTTGAGC
CTCTCAGCCGTCGGATCGCTCTAACGGACGATGTAGATCGTCCCCAGGTCAGGCGTTGCAAGCACCATCTCGCGGGCCGT
TGCTCCGCACAGCGAGCTCCTGAAACGCCCAGCCCAGGCCGTGCTCCGGTTTAACGGCCCGCGAGCTCCTGAAACGCCCA
GCCCAGGCCGTGCTCCGGTTTCTGCCTCGGAGAAAAAAGAACAATCCTACATCTATGCAAGTGTTTTGTTTTTTCGGAAG
AAAAAAGTCCAAAATAAACCTTGAACTTGTAAATCAAAGCTAAATCGAACCCTGAATCCCGGTTTATATTAAACCTTGTG
CATTTTTTCGAAGAGATTGTCGACATGGCAGCTGGTCGAACCGGGATAGCTGGCGACTGGGCCGGCCCACCAAACGTTAA
CATGTTTTTCTTTTGACTGAAAAATACCAAA
>chr5A_1
AGTCGGCACGTAGGTAGGTACCCACGAGACGGTGGTCGCA----------------------------------------
---------GGGTAGTCGGCACGTAGGTAGGTACCCACGAGAAGGTGGTCGCAGGGTAGTCGGCGTGTAGAGCCAGATTG
CCCTGGCACGAGAGAGTGCGCAGGGTAGTCGGCGGGTAGAGCCAGATTGCGAGGGCACCAGAGAGCGCGCAGGGTAGTCT
GCGGGTAGGTAGGGCCGCCGAGGTAGTAGATCGGCGAGCCATCTTGGGCTCGTGGCTCCTCTACAGGCGGCGTGGGCTTC
AATGCAGGACAGCACGCGGCGAGCTTTGCCCTGCCGCCCGCCGGTGGGACCACGGATCAGTCGGCCGATGCGTCACGGTG
GGGGTCTAGTGCAGGCAGTGGTGTAGACGATGGAAGATCGTCTCGGCCTCTTGGGCCAGTATCTCAATCAAATGGCTTGC
A-TTTTCATGTAGAAACGCATGTAATTTCGTTCACTGC-TTACCTTATTATCAGGTTTTGAAGAGAGATTGCTTTTGCCG
GAGATTACTAGGGAACGGGAGGAATACGAATGCATCGCTCCTGCCAAGTTTTTGTCTGGCTT-CAATGCGGGATAGGTGT
TTGGGACTTGAACGGCGAGCGGCGCAGCCTTGCGAGACCCA------------TTTTTGCGACCAGGCTTGCACTTGAGA
GTTTTGAGACCATTGATC--CTCCTAGTCCAACGCCCCTTCGTCACA---AGGGAAGTTTGGTTCGAATTCTTTCGAACC
AGAGTCCAGAGTTGCGACTCCTCTCACCCACAGCAGCATCCAGACGCACGCTGAGTTGGAACAAGGAGCTGAACCACTCG
GCCTTCCAGCCCGACGGGTGGCACGCTA----CATGCAGCCCGCCTGCCACGAATACACCTGCATGCATGCACGGCAGCC
CGCTCCTCCGGCCCAAGCTCCCTATAAGT-AGAGAGCTTCTCTTCCTGGCAACAACAAACACGGTCGCCTGGATCAGAAG
CCATAGCTTGT-TTCACCTAAAGAGAGAAAAAAAGGCT-TTGCTCCATCAACCTACCTACCCCC-ACAGAAGCAAATGGA
GTTCAAGCCCAAGGCGACCGTGTGCGCGGTGATGCTGGTGCTGCTCCTGCTTTCCTCCTGTGAGTAAGCCTGAGCGGCCG
CTCGCCGACTTATTAATTTGCTGCTGCTTATGGTTATGGACTAACGCTTTGTGACCGGCCGGGACATTTTTTTTCAGACA
GCGGCGGCGGTGGCATCGGCGTGGCGGAGGCGCGCATTTGCACGGGGAAGAGCCAGCACCACTCGTTCCCGTGCGTCTCG
GACAAGAGCTGCACCAAGACGTGCCTCAGCGAGCACGGCGCAAAATGGACGGCCGGCTACTGCAAAATCAGGCGCTGCAC
CTGCCAGAGGGAGTGCTAGGGCAGACGCTCCGCGC-GCGAGCTCCCCCACCCCCGCCCCGTCCATGGCGCCGTCTGTCAA
ACGAAGCCACCTATGTATCTTAAGTC-TTAACTACCATGTACCCACTCGCCGCCTCTGTCAGGAGATGTAATAAAACGTG
GCGCGGCGACCCGCCGGCGCGTCACCGCTGTACGTAGCATGATGCATGCCACGCGTTGCTTTTGGTAACAAAATAAATTG
ATTTATCCGTGGATATATGCAAGTCGTAAGATCTCTTG-CGTGCTCGGCAGCATCGAAAAATATCTCCACGTAATTTCTC
AAAGTGGTACTCGCCGAGGCCAAACGTTAACAGCCGGCATGAAGGCGGCCAGAGCTAGCGGGACCCTTGGAGGCT-GGCC
TCCTCCCCTGCTTTCATGTTATTTCAAGTCACTTGTTCCGCACTCACAGAATATAAAGTCAATTAAT-------------
--------CACTCAACCAAAATA---------------------------------------------------------
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>chr5D_1
AGTCGGCACGTAGGTAGGTACCCACGAGACGGTGGTCGCAGGGTAGTCGGCGTGTAGAGCCAGATTGCCCTGGCACAAGA
GAGCGCGCAGGGTGGTCGGCACGTAGGTAGGTACCCACAAGACGGTGGTCGCAGGATAGTCGGCGTGTAGAGCCAGATTG
CCCTGGCACGAGAGAGCGCGCAGGGTAGTCGGCGGGTAGAGCCAGATTGCGAGGGCACCAGAGAGCGCGCAGGGTAGTCG
GCGGGTAGGTAGGGCCGCCGAGGTAGTAGATCGGCGAGCTGCCTTGGGCTCGTGGCTCCTCCACAGGCGGCGTGGGCTTG
CATGCAGGACAGCGCGCGGCGAGCTCTGCCCTACCGCCCGCCGGTGGGACCACGGATCGGTCGGCCGATGCATCGCGGTG
GGGGTCAAGTGCAGGCAGCCGTGTAGACGATGGAAGATCGTCTCGGCCTCTCGGGCCAGTATCTCAATCAAATGGCTTGC
A-TTTTCATGTAAAAACGCATGTAATTTCGTTTACTGC-TTACCTTATTATCAGATTTTGAAGAGAGACTGCTTTTGCCG
GAGATTATTAGGGAACGGGAGGAATACGCATGCATCGCTCCTGCCAAGTTTTTGTCTGGCTTGCAATGCGGGATAGGTGC
-TGGGACTTGAACGGCGAGCGGCGCAGCCTTACGAGACCTC-----------CTTTTTGCGACCAGGCATGCAGTTGAGG
GTTTTGAGACCATTGATC--CTCCTAGTCCAACGCCCCTTCGTCACC---AGGGAAGTTTGGTTCGAATTATTTCGAACC
AGAGTCCAGAGGTGCGACTCTTCTCACCCC---CAGCATCCAGACGCACGCTGAGTTGGAACGAGGAGCTGAACC-CACG
GCCTTCCAGCCCGACGGGTGGCACGCTAGCTACATGCAGGATGCCTGCCACGAGTACACCCGCGTGCATGCACGGCAGCC
CGCTCCTCCGGCCCCAACTCCCTATAAGTAAGAGAGCTTCTCTTCCTGGCAACAACAAACACGGTCGCCTGGATCAGAAG
CCCTAGCTTGTATTCACCTAAAGAGAGAAAAAAAAAGGCTTGCTCCATCAACCTACCTACCCCCTACAGAAGCAAATGGA
GTTCAAGCCGAAGGCGACCGTGTGCGCGGTGATGCTGGTGCTGCTCCTGCTTTCCTCCTGTGCGTAAGCCTGAGCGGCCG
CTCGCCGACTTATTAATTTGCTGCTGCTTATGGTTATGGACTAACGC-TCGTGGCCGGCCGGGACATTTTTGGCAGA---
-CGACGGCGCCGGAGTCGGCGTGGCGGAGGCGCGCATTTGCACGGGGAAGAGCCAGCACCACTCGTTCGCGTGCATCTCG
GACAAGAGCTGCACCAAGACGTGCCTCAGCGAGCACGGCGCAAAATGGACGGCCGGCTACTGCAAGATCAGCCGCTGCAC
CTGCCAGAGGGAGTGCTAGGGCAGATGCTCCGCGC-GCGAGCTCCCCCACCCCCGCCCCGTCCATGGCGCC---------
-----GCCACCTATGTATCTTAAGTCTTTAACTACCATGTACCCACTCGCCGCCTCTGTCAGAAGATGTAATAAAACGTG
GCGCG----------------TCACCGCTGTACGTAGCATGATGCATGCCACGCGTTGCTTCCAGTGACAAAATCAATGG
ATTTATCCGTGAATATATGCAAGTCGTAAGATCTCTTTACGTGCTCAGCAGCATGGAAAAATATCTCCACGTAATTCCTC
AAAATGGTTCTCGCCGAGGCCGAACGTTAACAGCCGGGATGAAGGCGGCCAGAGCTAGCGGCACCCTTGGAGGCT-GGCC
TCCTCCCCTGCTTTCATGTTATTTCAAGTCACTTGTTCTGCACTCACAGAATATAAAGTCAATTAAT-------------
--------CACTCAACCAAAATA---------------------------------------------------------
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>SNPs
---------------------------------------S----------------------------------------
-----------------------------------------------------------------S-------SS-----
--S---------S-----------------------------------S-S-------S--------------S------
--------S----S----------------------S-----------S-------------------------------
---------------------------------------S------S---------------------------------
---------S--------------------------------------------------------S-------------
SS---------------S--------------------S-----------------------------------------
---------------SS------------------S----S----------------------S----------------
-----------------------------------------SSSSSSSSSSS-------------------S---S----
---------S--------SS-----------S---------------SSS-------------------------S----
-------------------------------------------------------------S--------S---------
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-------------------------------------S-----------S------------------------------
-------------S------------SSS----S---------------S---S--------------------------
---------------------------------------------------------S----------------------
-----S--------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------------------------------------------S-------------
-----------------------------------S---------S--------------------------S-S----S
SSSSSSS-----------------------------------------------------S--S----------------
-----S---------------------S----------------------------------------S-----------
---SS-----------------------S-------------------S----------------------S--------
S-------------S--SSSSSS----SSSS--------------------------------------------S----
------------S----S-S-----------S----------------------S-S---------SSSSSSSSSSSSSS
SSSSSSSS---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_692
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--------------------------------CGAGACCTCCACGCTGAATC----------------------------
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>reverse_2043
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------------------------------------------TGCCATCGGATCGCTCTAAC------------------
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