>input_sequence_83271
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------------------------------------------ATGTCGGCGATGACGGCGGCGGTGCCCTTCTGGCGCGC
GGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGCTGGTGCGGAGCTGCCTCAAGGAGCCCTTCAAGACCG
AGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGGCCGACGAGAAGCAGCAGAAGCCCAGTAAGTTCCTC
GATCCGATCAAGTCCCTGTCCCGCGTCCTCGATCCGGTTTGATTTGCCTGGCTACGGAATGAATCCTAGGGTTCGTGGAT
CTGGCTTGGTACTGTTGGATGTAGATCTTGGTCTAGGTCTAGCGGTTTACATGTCTAGGTTGA-----------------
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>chr3A_1_TraesCS3A01G291800
GCGTGCTCGTACCTACCGTCAAAAACTTTGATGGTAGGGTTGTGGGCGGTAGCAAAAAGATTAGATCTCGATTTTTTTTA
ACTCAGGGTCAAATCTGAAATAGGTTTCGGAAAAGGATCAAAACACGAAATTTTGCCGCCGCTCGGTTCGCCCAAATCAC
ATGCACGATGAAGTATTTGGGATAATTATATTAGCTTTGGTTAGGGTGCGCCACTGGACAATAGTGCAACATCCAAAGAA
CACGTGAGGGATGGACCCCCTCCCTAAAAACAAATTTAATATCGTTGTAAGCACATGACTCATATATCATATACTTCCTG
CGCTTTTAGCTGGTCAAAGTCAAGCTTTATAAACTTTGACTAAATTTATAGACAAAAATATGAACATACACAATACACAA
TTCAATACCATTAATTCATTATTGAATGTGCTTTAAAAACGGAGTGGGTACAAAACTGATAAAAACAAATACTAGTACAT
GAAAAGGCCGAGAAAAATACTCCCTCCATTCCAAATTAATTAACCTTCGTTCCAAATTAATTAACCTCCACCTCCATTTG
TCTAGACACAGATATTTATATCTACTTTCTCCGTCACAGTCTAAAAGACACAATTAAATTTATATGCACTTCCACAATAG
ATAAGGTTTGGTCCAATGAACCGTGACGAAGAAAGTAGTCAAAAATGAAAGTCAAGAAACTTGGAACGAAGGAAGCATGA
ATTGGAATGGAGCCCTGCCCCTCGCTTTATAGTTTATACCCGTCCGACCCTGCCCCGCCGAGCTCCGCGAGCGATGTGGG
ACTAATCGAACTGGGAGGTTTCGCGTCTGCGCCTCGTTCCCGACCGTTTGGGCAGAAGCAAAGAAGCCCAGCGAGAAGAT
AAAAGGCCTCAAGGCCCATTTCCCCATCTCTATCATCGGCGGCGGCGGCTCGAGCAGAGGAAAGGAAGCTTTCTACCCTA
GCAGAGAAAA--AAAAGCAGAGGAGAGGAAGCGGAGGCGACGATGTCGGCGATGACGGCGGCGGTGCCCTTCTGGCGCGC
GGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGCTGGTGCGGAGCTGCCTCAAGGAGCCCTTCAAGACCG
AGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGGCCGACGAGAAGCAGCAGAAGCCCAGTAAGTTCCTC
GATCCGATCAAGTCCCTGTCCCGCGTCCTCGATCCGGTTTGATTTGCCTGGCTACGGAATGAATCCTAGGGTTCGTGGAT
CTGGCTTGGTACTGTTGGATGTAGATCTTGGTCTAGGTCTAGCGGTTTACATGTCTA-----GGTTGATCTGCTGGATTG
AATACGATCTGATCAGCGCTGATGTTTGGTTGGGCCGCGCGTCTTCGCGTGATTCTGTTGCACACCTGCGTAGAAATCTG
TGCGTCGTTGACGATGGCACAGATCTAGTGTGCGTCCTTTTTTTG---CCTGTTGGTAGAAATGTGTTGTGAGGAGGGGA
AAAAA-CTGACCTACGCAAAAGGATGATCTTAAAGTTAGCTGTCAGTGTAATATAC----AAGATTGTTGTGTCATCTGC
TAAGGACTCTGGTATCAGCTCACTTGAGATGTATTGGGAATTTTAACTCATCCT-ATAGCCTGGAGCTGCTAGAATCGTA
AGATTATGTTTTACAGTTTAGT----ACTTAGTATTACTTATTTGCTGGAAAATAGAGATGATTAACCATGAATGCATGA
AGTAATACATAACGAGGATCCTACCCTGAGTGTGACCTTGCATAGGCTGGATTGGGCGGACATGATGGTCCTTATCGTCT
CTGTTCTATGCAAAATTTTACCAGATAAAA-AATATATCTATATTCCTTTAAAACCAGGAGAAACT--------GTGGCT
CTGTTTGAAGATTAACTGTAGGAGCCCCACCTGAACTTCTATGCAGTCATGGTTATCGATTAATCTCTGCAAGCTTTTCG
CAATAGATTTCTTTCCCCTGATGCAAGGAAAATATCATGAGCTTAATCTGTGGCACCACGTGGCTGCTGCGTGCACTAGA
GCATTCGTGAACTCATGCTGACGATAAAGAAACCTCATGTGGCAAAGGCATGTGCAAGTCTACTAATAGAGGGGCTGGTG
TGGTAATAATTAGCACCCGTAGTTTTCACTTTTCAGAGTCAATGCATCAGTACCTCATAGTTCTGCAAATGGCTCAAGAT
TTGTCATTACTCTATTTGTTGATACAGAGCTGGTAGCAA-AGCAGAGGGAGTTTATTCGGCTGCATGCATGATTGCATGT
GAACACTAAGTAGTGATCTATAGCAATACTGATTTCGTGTTTCACATAACT
>chr3D_676
TAGTCAATC-----------------------------------------------------------------------
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------------------------------------------AAATGGAAGTAAAGCAATTTGAAACGAAGGAAATATGA
ATGGAAACGGAGCCCTGCCCCTCGC-------TTTATACCCGTCCGACCCTGCCCCGCCGAGCTCCGCGAGCGATGTGGG
ACTAATCGAACCGGGAGGTTTCGCGTCTGCGCCTCGTTCCCGACTGTTTGGGCAGAAGCAAAGAAGCCCAGCGAGAAGAT
AAAAGGCCTCAAGGCCCATTTCCCCATCTCTATCATCGGCGGCGGCGGCTCGAGCAGAGGAAAGGAAGCTTTCTACCCTA
GCAGAGAAAAAAAAAAGCAGAGGAGAGGAAGCGGAGGCGACGATGTCGGCGATGACGGCGGCGGTGCCCTTCTGGCGCGC
GGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGCTGGTGCGGAGCTGCCTCAAGGAGCCCTTCAAGACCG
AGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGGCCGACGAGAAGCAGCAGAAGCCCAGTAAGTTCCTC
GATCCGATCAAGCCCCTGTCCCGCGTCCTCGATCCGGTTTGATTTGCCTGGCTACGGAATGAACCCTAGGGTTCGTGGAT
CTGGCTTGGTACTGTTGGATGTGGATCTTGGTCTAGGTCTAGAGCTTTACATGTCTATGTTTGGTTGATCTGCTGGATTG
AATACGATCTGATCTGCAGTCATGTTTGGTTGGGCTGCGCGTCGTCGCGTGATTCTGTTGCACACCTGCGTAGAAATGTG
TGCGTCGTTGACGATGGCGCAGATCTAGTGTGCGTCGTTTTTTTC---CCTGTTCGTAGAAATGTGCTGTGAAGAGGGGG
GGAAA-CTGACCTACGCAAAAGGATGATCTTAAAGTTAGCTGTCAGTGTATAATATACTTAAGATTGTTGTGTCATCTGC
TAAGGACTCTGGTATCAGCTCACATGAGATGTATTGGGAATTTTAACTCAGTCCGATAGCCTGGAGCTGCTAGAATCCTA
AGATTATGTTTTACAGTTTAATACTAACTTAGTGTTACATATCTGCTGGAAAATAGAGATGAAT-ACCATGAATGCATGA
AGTAATACATAACGAGGATCCTACCCTGAGTGTGACCTTGCATAGGCTTGATGA--------------TGCTTATCGTCT
CTGTTTTATGCATAATTTTACCAGATAAAAAAATATATCTGTTTTCCTTTAAAACCAGGAGAAACTCGGTAGTGGTGGCT
CTGTTTGAAGATTAACTGTAGGAACCCCACCTGAACTTCTATGCAGTCATGGTTATTGATTAATCTCTGCAAGCTTTTTG
CAATATATTTCTTTCCCCTGATGCAAGGAAAATATCATGAGCTTAATCCGTGGCACCACGT--CTGCTGCGTGCACAAGA
GCATTCACGAACTCATGCTAACGATAAAGAAACCTCATGAGGCAAAGGCATGTGCAAGTCTACTAATAGAGGCACTGGTG
TGGTAATAATTAGCACCCGTAGTTTTCACTTTTCAGCGTCAATGCATCAGTACCTCATAGTTCTGCAAATGCCTCAAGAT
TTTTCATACCCTATTTGTATGATACAGAGCTGGTAGCAA-AGCAGAGGGAGACTATTCAGCAGCATGCATGATTGCATGT
GAACACTGAGTAGTGATCTATAGCAATACTGATTGCGTGTTTCACATAACT
>chr3B_683
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------------------------------------------AAATGGGAATCAATCAATTTGGAATTAAGGGAGTACGA
ATCAGAACGGGGCCCTGCCCCTCCA-------TTTATACCCGTCTGACCCTAGCCCGCCGAGCTCCGCAAGCTATGTGGG
ACTAATCGAACCGGTAGGTTTCGCGTCTGCGCCTCGTTCCCGACCGTTTGGGCAGAAGTAAAGAAGCCCAGCGAGAAGAT
AAAAAGCCTCAAGGCCCATTTCCCCATCTCTATCATCGGCGGCGGCGGCTCGAGCAGAGGAAAGGAAGCTTTCTACCCTA
GCAGAG-AAAAAAAAAGCAGAGGAGAGGAAGCGGAGGCGACGATGTCGGCGATGACTGCGGCGGTGCCCTTCTGGCGCGC
GGCGGGGATGACCTACATCGGCTACTCCAACGTCTGCGCGGCGTTGGTGCGGAGCTGCCTCAAGGAGCCCTTCAAGACCG
AGGTCTCCTCCCGCGAGAAGGTCCACTTCTCCCTCTCCAAGTGGACCGACGAGAAGCAGCAGAAGCCCAGTAAGTTCCTC
GATTCGATCAAGTCCCTGTCTCGCGTCCTCGATCCGGTTTGATTTGCCTGGTCACGGAATGAATCCTAGGGTTCGTGGAT
CTGGCTTAGTACTGTTGGATGTGGATCTTGGTCTAGGTCCAGCGGTTTACTTGTCTA-----GGTTGATCTGCTGGATTG
AATACGATCTGATCAGTGATGATTTTTGGTTGGGCTGCGCGCCGTCGCGTGAATCTGTTCCACACCTGCGTAGAAATGTG
TGCGTCGTTGACGATGGCACAGATCTAGTGTGCGTCGTTTTTTCTTTTCCTGTTGGTAGAAATGTGCTGTGAAGAGGGGG
GGAAAACTGACATACGCAAAAGGATGATCTTAAAGTAAGCTGTCAGTGTAATATAC----AAGATTTTTGTGTCATCTGC
GGCGGCGGCTGGTATCAGCTCACTTGAGATGTATTGGGAATTTTAATTCGCCCT-ATAGCCTGGAGCTGCTAGAATCGTA
AGATTATGTTTTACAGTTTAGTACTAACTTAGTATTACTTATTTGCTGGAAAATAGAGATGAGTAACCATGAATGCATGA
AGTAATACATAACGAGGATCCTACCCTGAGTGTGACCTTCCATAGGCTGGATTGGGTGGACATGATGGTGCTTATCGTCT
CTGTTTTATGCATAATTTTACCAGATAA-AAAATATGCCTGTGTTCCTTTAAAACCAGGAGAAACTTGGTATTGGTGGCT
CTGTTTGAAGATTAACTGTAGGAACCCCACCTGAACTTCTATGCAGTCATAGTTATTGATTAATCTCTGCAAGCTTTTTG
CAATATACTTCTTTCCCCTGATGCAAGGAAAATATCATGAGCTTAATCTGTGGCACCACGT--CTGCTGCGTGCACAAGA
GCATTCACGAACTCATGCTAACGATAAAGAAACCTCATGAATCAAAGGCATGTGCAAGTCTACTAATAGAGGGAATGGTG
TGGTAATAATTAGCACCTGTAGTTTTCACTTTTCAGCGCCAATGCATCAGTACCTCATAGTTCTGCAAATGCCTCAAGAT
TTGTCATACCCTATTTATATGATACAGAGCTGGTAGCAAAAGCAGAGGGAGTTTATTCAGCCGCATGCATGATTGCATGT
GAACACTGAGTAGTGATCTATAGCAATACTGATTTTGTGTTTCACATAACT
>SNPs
SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------S--S---------------S----
--S----S-----------------SSSSSSS------------------------------------------------
-----------S--------------------------------------------------------------------
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----------------------S---------------------------------------------------------
------------------S----------------S-------S---------------------------------S--
------------------------------------S-------S---------------------S-----S------S
SS------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------S------------S----------
-----S------S---------------------------S-S-------------------------------------
-----------------------S--------------------------------S---------------------S-
-----S-------------------------------------------------------SS-------------S---
------SS-----------S-------------------S---------------------------------S------
------------------------------------S----------------------------------S--------
-------SS-SSSS--SSS---------------------------------------S--S------------------
-------S-------------------------------------------
>forward_752
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------------CCCTGCCCCTCGCTTTATAG------------------------------------------------
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>reverse_2120
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---------------------------------------TGGCAAAGGCATGTGCAAG----------------------
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