>input_sequence_83263
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-----------------------------------------------------------------------ATGGCCACC
TCCGCCGCTGCCGCCGCCTCGTCTCCTTCCTCCGACCAACCTCCCGCGAACAAGGCGGTCCACGTGGTGGTCAAGGGCCG
GGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCAACAACC
GCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCTGCCAAGGTCGACGAGATGGTCATCCGCCGCCTCCCCGTC
GGCCCTCCTGCCGCCGCCGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGAAATCAA
GCTCACCGTCTGA-------------------------------------------------------------------
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>chr7D_1_TraesCS7D01G209300
TCTTTACATTTTCTTTTTTCTTTTGTTTGTATTTTCAAAAATGTTTTAAATACATGTATTCCAAAAAAATAATATACTTA
CATTTCTATAAAATGGTGAATTGAAAAACATGTTAGCGTAGTATAGAAAAGTGTTGTTTGCATTAAAAAAA-TGTGACAT
ATAAAAAATGTTCACATGCTTAAAAAGAGTATGTGAATTTTTTTAAAAAAAATCTATGCAATTTAAAAAATGTCCGTATA
TTTCAAATAAAATGTTTCAAATCATTGAAAAACGTAGGTTGCAGTTAAAAAATACACATGCGCTTCAAAAATATGTTCGT
ACTACTTTTATAAAATGTTGACACAAATGTAAAAAAAATGATTGTGCAG-TTAAAAAAATGATTATATCATCCAAAAAT-
-TGGTGTATCTGAAAAATGTTTAGCACATATTAAGAAA-TACTCCATCCGTCTCAAAATGTAAGACTTTTTTGAC--ACT
AAGATAAATGCAGTATATTCAAAACATGTAATTTTAAAATTTGTTAATCATGTATTT-AAAAATATTCAACATGTATAAA
TAAATGCTTCATGTATACTAAAAATGCTACAATGTGTGCTGAAAAAGTAAGTGTATATTCAAGT----------------
---------AATGTTATTACATGTCCTAAAATTGTTTACATGATCAAAATAATGTTTCGTACCATTCATAAAATGTACGT
GACA-TTTTG-AAAAATGTTCAGGCATTCCC-AAAATGTTCGTGACATTTGAAAAAAAA-TACAATGTAAAAAATTATTT
GTGTAGTTTTAAAAAGGAGCCATTAAAAAAGTTCTTTAGGGTGATCTAAGAGATATCACTT-------------------
-----------------GGTTAGCTGCTTCCGATCAAATGTCAAAAGTTGGAACCCTTTTCCCAAAGCTTTTGGGCGAAA
AGCTACTTCGACTTTAGAGGCCCGACGAACACAAGATTCCTCCGCCCCC-AGTTGTCCCACCTG----------------
--------------------TCACGTCTCTATCGCCGCCTACCGCTGCCTCG-CCCTTCCCCGCTGACGCCATGGCCACC
TCCGCCGCTGCCGCCGCCTCGTCTCCTTCCTCCGACCAACCTCCCGCGAACAAGGCGGTCCACGTGGTGGTCAAGGGCCG
GGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCAACAACC
GCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCTGCCAAGGTCGACGAGATGGTCATCCGCCGCCTCCCCGTC
GGCCCTCCTGCCGCCGCCGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGAAATCAA
GCTCACCGTCTGATCGGGTGACCCC-GGCGTTCGATCGACCACAGCCAGCGGGTTCTGCACGGCTTGTGCTCAACTGCCG
ATGGTTAGTGCCACCA-ACCTAATTCCATATCTGACCTCTTGTTCTGCAGCATCTGCACTACTGCATTTCTTAGGCAAAC
TGTTATAAGAGAACTATTGTGGTCAATGCGCACAACAATGGCTTTATTCGATCAGTCCACATGGTGGCAATTAGGATCAA
AGGTCATGTCCAAGACTGTGTTGCTATGTATTGTA-CTCGGTATAGTTCTTGAATAATATAGCACTGCTGAATTTTGA-T
TTAGAACTATGGTACCAAGATCAAATTGTTTCGGTCATTGACAAATTCACGACATAAATTTACCATCAAACACTTCC-AA
TAACCGCGATCAGCTACGAACATAACGAGCAGAGTTACACATTCGTAGAAACCTGATATTAGCTCAACTTACTAGTGAAC
TAGATACATTTCTCTGTTCCTGATCTCCATATAAACCTTTGAATGGCATATACATTCACCTCCATCTTCGCAGATCTGTC
TACCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCACATACTGATATACATCACACTAAATTGCATAGTGTTAC
TCGCTCAACTTGGCAACTTGCTAGTGAACTAGATACATTTCTCTGTTCCTGATCTCCATACGAACCTTGAATGACTTAAT
ACATTCACCTCCATCTTTGCAGATCTGTCTACCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCATATACTGAT
ATACATCACACTACATTGCATAGTGTTACTCGCTCAACTTGGCAACTTGCTAGTGAACTAGATACATTTCTCTGTTCCTG
ATCTCCATACAAACCCTGAATGACATATACATTCACCACCATCTTCACAGATCTGTCTACCTAGCTAGCTAGGCCAGTA-
CCTGCATATACTGATATCCATCACACTACATTGCATAGTGTTACTCGCTCAAACCTTCT
>chr7A_48
-----------------------------------------------AAAAACATGTATTCCAAAAAAAATACTTAATTT
TTT---TATAAAATGCTGAATTAAAAAACATGTTAGCGTAGTATAAAAAAGTGTTGATTGGATTAAAACAATTGTGACAT
ATAAAAAATGTTCACATGCTTAAGTATGTGACAG-------TTTTAAAAAATTCTTTGCAATGTAAAAAATGTTCTTATA
ATTCAAATAAAATGTTTCAAACCATTGAAAAATGTAGGTTACAGTTAAAAAATATGCATGCGCTTCAAAA-TATGTTCAT
ACTAGTTTTACGAAATATTCACACAAATGTAAAAATAATGATTGTGCAGTTTAAAAAAATGATTGTATCGTCCAAAAAAA
ATGGTGTATCTGAAAAATGTTCAGCACATATTAA-AAA-TATTTCATCTGTCTCAAAATGTAAGACATTTTTTTGCAACT
AAGATAGATGCAGTATATTCAAAACATGTAGTTCTAAAATTTGTTAATTATGTATTTGAAAAATATTCAACATGTATAAA
TAAATGCTTCATGTATACTAAAAATGCTACAATGTGTGCTGAAAAAGTATATATGTATTAAAGAAGGAAATGAAAAAAAC
GGGAATAAAAATGTTATTACATGTCCAAAAATTGTTTGCGTGATAAAAATAATGTTTCCTACCATCCAAAAAATGTACGT
GACA-TTTTTTAAAAATGTTCAGGCATTCCAAAAAATGTTTGTGACATTTGAAGAAAAATTACAATGTAAAAAAATATTT
GTTTAGTTTTAAAAATTTGCGATTAAAAATGTTCTTTAGGGTGATCTAAGAGATATCACTTGGTTAGTTTTTTTTGAGAC
ACATCACTTGTTTAGTTGGTTAGCTGCTTCCGATCAAATGTCAAAAATTGCAACCCTTTTCCCAAAGCTTTTGGGCCGAA
AGCTACTTCGACTTTAGAGGCCCGACGAACACAAGATTCCTCTGCCCCCCAGTTGTCTCAGCTC----------------
--------------------TCACGTCTCTATCGCCGCCTGCCGCTGCCTCGCCCCTTCCCCGCCGACGCCATGGCCACC
TCCGCCGC---------CTCGTCGCCTTCCCCCGACCAACCTCCCGCGAACAAGGCGGTCCGCGTGGTGGTCAAGGGCCG
GGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCAACAACC
GCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGCGACCCTGCCAAGGTCGACGAGATGGTCACCCGCCGCCTCCCCGTC
GGCCCTCCTGCCGCCGCCGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGAGATCAA
GCTCACCGTCTGATTCGGTAACCCC-GGCGTCCGATCGACCACAGCCAGCGGGTTCTGCACGGCTTGTGGTCAACTGCCG
ATGGTTAGTACCGCCA-ACCTAATTCCATATCTGACCT--------GCAGCATCTGCACTACTGCATTTCTTAGGCAAAC
TGTTATAAGAGAACTATTGTGGTCAATGTGCACAACAATGGCTTTATTCAACCAGTCCACATGATGGCAATTAGGATTAA
AGGTCATGTCCAAGAA--TGTTGCTATGTATGGTATCTCGGTATAGTTCTTGAATAATATGGCACTGCTGAGTTGTGATT
TAAGAGCTATGGTGCCAAGATGAGATTGTTTCTGTCATTGACAAATTCGTCACATGAATTTGCCATCAAACACTAGCAAA
TAACCGCTATCAGCTATGAACATGACGAGCAGAGTTACACATTCGTAGAAACCTGATATTAGCTCAACTTGCTAGTGAAC
TAGATACATTTCTCTGTTTCTGATCTCCATAC-AAACCTTGAATGACACATACATTCAGCT-------------------
--CCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCATGTACTGATATACATCGCACTAAATTGCATAGTGTTAC
TCACTCAACTTGGCAACTTGCTAGTGAACTAGATACATTTG---------------------------------------
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----------------------------------------------------------------------TCTGTTCCTG
ATCTCCATACAAACCCTGAATGACATATACATTCACCTCCATCTTCACAGATCTGTCTGCCTAGCTAGTTAGGCCAGTAA
CCTGCATATACTGATATACATCACACTACATTGCATAGTGTTACTCGCTCAAACCTTCT
>chr7B_320
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ACTAGTTTTATAAAATATTCACAAAAATGTAAAAATAATGATTGTGCAGTTTTTTAAAATGATTATATTGTCCAAA-AAA
ATGGTGTATCTGAAAAATGTTCAGCACATATTGA-AAACTATTCCATCTGTCTCAAAATGTAAGACATTTTTTTACAACT
GAGATTGATGCAGTATATTCAAAACATGTAGTTCTAAAATTTGTTAATTACGTGTTTGAAAAATATTCAACATGTATAAA
TAAATGCTTCATGTATACTAAAAATGCTACAATGTGTGCTGAAAAAGTATATATGTGATAAAGAAGGAAATGAAAAAA--
GGGAATAAAAATGTTATTACATGTCCAAAAATTGTTTGCGTGATAAAAATAAAGTTTCCTACCATTCAGAAAATGTACGT
GGCATTTTTG-AAAAATGTCCAGGCATTCCAAAAAATATTTGTGACATTTGA--AAAAAATACAATGTAAAAATTTATTT
-TTTAGTTTTAAAAAGGCGCCATTAAAAATGTTCTTTAGGGTGATCTAAGAGATATCACTTGGTTAGTT-----------
-----------------GGTTAGCTGCTTCCGATCAAATGTCAAAAATTGCAACCCTTTTCCCAAAGCTTTTGGGCCGAA
AGCTACTTCGACTTTAGAGGCCCACGAGCACAAAGATTCCTCCGCCCCC-AGTTGTCCCACCTGTCACGTCTCTAATTTC
TCAACAACAAAAAAACCCTGTCACGTCTCTATCGCCGCCTGCCGCTGCCTCGCCCCATCCTCGCCGCCGCCATGGCCACC
TCCGCCGCCGCCGCCGCCTCGTCACCTCCCCCCGACCAACCTCTCGCGAACAAGGCGGTCCGCGTGGTGGTCAAGGGCCG
GGTCCAGGGCGTGGGCTTCCGCGACTGGACGGCCGAGACGGCGGAGTCCCTCGGCCTCGCCGGCTGGGTCCGCAACAACC
GCCGCGACGGCACCGTGGAGGCCCTCCTCTCCGGAGACCCTGCCAAGGTCGACGAGATGGTCACCCGCCGCCTCCCCGTC
GGCCCTCCTGCCGCCGCGGTCACCGCCGTCGTCACATCCCCAGCCGACCACATCCACCCCTCCCTCGGCTTCGAAATCAA
GCTCACCGTCTGATTGGGTAACCCTGGGCGTCCGATCGACCAGAGCTAGCGGGTTCTGCACGACTC-TGCTCAACTGCCG
ATGGTTAGTACCACCAGACCTAATTCCATATCTGACCT--------GCAGCATCTTCACTACTGCATTTCTTAGGCAAAC
TGTTATAAGAGAACTATTGTGGTCAATGTGCACAACAATGGCTTTATTCGATAAGTCCACATGGTAACAAT---------
-------------GACTGTGTTGCTATGTATTATATCTCGGTATAGTTCTTGAATAATATAGCACTGCTGAGTTGTGATT
TAAGAGCTATGGTGCCAAGATCAGATTGTTTCTGTCATTGACAAATTGGTCACATGAATTTGCCACCAAACACTTCCAAA
TAACCGCGATCAGCTATGAACATGACGAGCAGAGTTACACATTCGTAGAAACCTGATATTAGCT----------------
------------------------CTCCATACAAACCTTTGAATGGCATATACATTCACCTCCATCTTCGCAGATCTGCC
TACCTTCTTCTAGCTAGCTAGGCCAGTGCCTGCATATAGCCATATACTGATATACATCACACTAAATTGCATAGTGTTAC
TCGTTCAACTTGGCAACTTGCTAGAGAACTAGATACATTTC---------------------------------------
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----------------------------------------------------------------------TCTGTTCCTG
ATC-CCATACAAACCCTGAATGACATATGCATTCACCTCCATCTTCACATATTTGTCTACCTAGCTAGCTAGGCCAGTA-
CCTGCATGTAATGATATACATCACACTACATTGCATAGTGTTACTCGCTCAAACCTTCT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------SS-SS--S--S
SS-SSS---------S------S----------------------S----------S---S-------S-----------
-----------------------SS-SSSS-SSSSSSSSSS---S------S---S------S----------S-S----
S--------------------S----------S-------S-------------SS--------------S-------S-
----S-----------S--S---------------S---------------------------------S--------S-
---------------------S------------S------S------S-----------------S-----SSS-----
------S-----------------------S--S--------------S-------------------------------
-------------------------------------------------SS-S-S----S---S----------------
--------------------------S----------S-S----S-------------S---------S-----------
------------------------------S---------S------------S--------------------------
--S--------------S-----------S--------------------------------------------------
----------------------------------------------S---S-------------------------SS--
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----------------------------------------S-----------------------S---------------
--------S--------------S------S------------------------------S------------------
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---------------------------------------------------------------S----------------
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--------------S----S-----------S------------------------------------------------
---------S----------------------------SSSSSSSS----------------------------------
----------------------------S------------------------------------------------S--
-----------------------------------------------------------------------S--S-----
-S---S-------S---------S--------S---------------SSS----S-----S------------------
----------------S------S----------------------------------------------S---------
------------------S------------S----------------------------------------------S-
------------------------------------------S-------------------------------------
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------------------------S------------------------------------------
-----------------S-----------------------------------------
>forward_1081
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----------------------ACGTCTCTATCGCCGCCTA---------------------------------------
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>reverse_2268
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---------------------------ACTCGCTCAACTTGGCAACT---------------------------------
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