>input_sequence_83237
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----------------------------------------ATGAGAACTAGCATCCTCCTCCTCCTTGCCGCTCTTGGTG
CCGTCTCTATCATCGCCACACCTACAGCGCTCGACGGGGAATGGCAACCGATCAAGAACGTCACCGACCCACATGTCCAG
GACCTCGGCAGTTGGGCGGTGGCGCAACACAACAAGGTGTCCATCTCCAGGCTCAGGTCCGCCATGGTGCTGAGCGGCGA
AGTGCAGATTGTGGCCGGCGTGGAGTACCGACTCGACGTCCAAGCATTGCAGGGTGATGGCAAGGACGCCATGTATAAGG
CAGAGGTGTTCGAGCAGGGCTGGCCGACCAACACAACTCGCAATCTCATCTCCTTCGAATAG------------------
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>chr4D_1_TraesCS4D01G252400
ATTTAACGCGGCCACCTACCCGGGGCACGCATCAGTCAGTGGAAGCGTCAGGAGGCCGTCCATTTTTAATCCACGCGTGC
GGGGGGCTGGCCTCATCCACTTCCACTTTCACTGCCCGTCCACATCTAGCCCCCGCGTGCTCCCTTGCCAGCGAGAAGCA
AACCCTAGTCATGGGTTTCTTCAGCGCCTCCGGCAAGAGCAAGGGGAAACTCACCCCCGGCGCTTCCTCCTCCCACGCGC
TTTTTTTTGTCCGGTTTACAAAATATGGGTTAGGCCAGCGTTGGGTACACGCGTCGACCCAAATGAAAAAACAAACACAG
GCGTCCGCGCGGCCGACCCAAACGGACAAAAGACAGACAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGGGGATGCTCTT
AATTTCAATACCAATTAAATCATACTACTAGATATACCCCAAAGTGATGCAAAGGCCGGGGTCATCCTCTTTTTTTTTTA
AAGAAGGATATACCATAAAATTTCCTAAAAAAATAGATATACCACAAAAACTTAATGCGTACAATTAATTCTAACTATTT
AATGCATTTAATCTATTCTCCTTAAATACTCCGGAATTCCTCCTCCTCTCCCCACTTCATCTCATTCGCTGCAAACTCCA
CCTCAAGGCAGGATTAGCCGTTGCCCGCAACCCAGCAACCATGAGAACTAGCATCCTCCTCCTCCTTGCCGCTCTTGGTG
CCGTCTCTATCATCGCCACACCTACAGCGCTCGACGGGGAATGGCAACCGATCAAGAACGTCACCGACCCACATGTCCAG
GACCTCGGCAGTTGGGCGGTGGCGCAACACAACAAGGTGTCCATCTCCAGGCTCAGGTCCGCCATGGTGCTGAGCGGCGA
AGTGCAGATTGTGGCCGGCGTGGAGTACCGACTCGACGTCCAAGCATTGCAGGGTGATGGCAAGGACGCCATGTATAAGG
CAGAGGTGTTCGAGCAGGGCTGGCCGACCAACACAACTCGCAATCTCATCTCCTTCGAATAGATCGACCGAGCGACCAAA
GTTGATCCAGTACTATGAGCGACTATTGTTGTACCTTTTTTTGTTGCAATAAAAAATCTCGAGAACTGGGTGCCTCTTTT
CACAATCGAGAAAAGGTGATTTTTCATTGGGTCGTGCTACGTGTCCGCCTCCTCGCGAGCTATCCGATTATATGGAGGGA
GACGTCCGTTCAATTTCATGAAACAATGCTTTTGTTGCAAAGCCTCCTCTTATCTAATTTTTTGTAACAAGACTCATGTT
ACAAAATT---TATTTT--TCTAATTTTCTGCAACAAGATCTTTGTTGC-AAAAACTTTTCTTCTCTAATATTTTACAAC
AAGACTCATGTTGCAAAACTTCTTATTCTCTAATTTTCTGCAACATGATCCTTGTTGCAAAA---CTTCCTCTCTATTTT
TCTGCAACAAGACCCTTGTTGCAAAACCTCAATTGCAACATTACCAAACATCTCCACCCTCTTCTATGTATTCCTGCAAC
AAGACTATTGTTGTGAAAACTTGCAAGAACACCGAGGACTGCAATAGAGAGAACACCCCGTGGTCTCCGTAGCACCCGTG
-TTTTTGCAGCAGAGGATGGACGCCAGTGGCTGCCGCCGATGTGG-TGGGGCTGCAGC-AGCATGCTTGTTTGAGAAGAG
GTGAGGATGGGATCCATGGAAATAGGCAGGGGATGGAGAGATAGAGG--TAGGGGATGGAAGGGTCAACAGAAGAATGTG
TGGCTGTTGGGATAAAGATAGAAGTGAGCGGTTGATGTGCCCCACG-TGGGACGCGTGGCTAATGGGGAAGGCCGCGGAC
GCGAGTGACC-ATCCGTCGGCTGATTAGTAGCGTTTCCTTTTTTCATTTCCAAAAAATAAAAGAAAAATATGATATATAT
TTTTCATGCAAGAGTTCGGAAGCTCGATAGATAGATAGAACTTTCTAACAAATCGCATGGGATACAGTGTTTTGGTGCCG
AGCCTCAGATGCACCTGGTACCCTGTCCGTTGCATATT
>chr7D_1530
TCATTTTCTGC---------------------------------------------------------------------
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---------------------AACAATGCTCGTGTTGCAAAACATCCTCTTATCTAATTTTCTGTAACAAGACCCATGGT
ACAAAATATTTTCTT---CTCCAAATTTCTGCAACAAGATCTCTATTGC-AAAATCTTATTTTCTCTCATTTTCTACAAA
AAGACCCATGCTGCAAAACTTCTTCTTCTCTATTTTCCTGCAACAAGACCCTTGTTGCAAAATCTCTTCATCTCTATTTT
TCTGCAACAAGGCCATTATTGCAAAATCCCCATTGCAACATGACCCAACATCGCCATCCTCTTCTATGTATTCCTGCAAC
AAGACTGTTGTTGCGAAAACTTGCAAAAACGTTGATGGCTGCAACGGAGAGAGCACCCTATGGTCTCTGCAGCACCCCCG
-TTTTTGCAGCAGAGGAAGGGCGCTGGTGGCCGCCGCGGATG-TGATGGGGTTGGAGC-AGCGTGCTTGTTTGAGAAGAG
ATGGGGATGAGATCCATGGAAAAAGGCAGGGTATGGAGAGATAGAGG--TAGGGGATGGGAGAGTGAACGGAAGAATGCG
TGGTTGTTGGGATAAGGA-AGAGAAGAACGGTTGATATGCCCCCACATGGGACGCGTGGCAAGCTGGGAAGGCAGCGGAC
ACGAGTGAGCGATCCGCCGACTGAT-------------------------------------------------------
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>chr7B_1530
TCATTTTCTGC---------------------------------------------------------------------
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---------------------AACAGTGCTCGTGTTGCAAAACATCCTCTTATCTAATTTTCTGTAACAAGACCCATGGT
ACAAAATATTTTCTT---CTCCAAATTTCTGCAACAAGATCTTTGTTGC-AAAATCTTCTCTTCTCTCATTTTCTACAAC
AAGACGCATGTTGCAAAACTTCTTCTTCTCTATTTTTCTGCAACAAGACCCTTGTTGAAAAATCTCGTCTTCTCTATTTT
TCTGCAACAAGGCCCTCATTTCAAAATCTCCATTGCAACATGACCCAACATCGCCATCCTCTTCTATGTATTCCTACAAC
AAGACTATTGTTGCGAAAACTTGCAAGAACGCTGATGGCTGCAACGGAGAGAGTACCCTGTGATCTCTGCAGCACCCCAC
CTTTTCGCAGCAGAAGAAGGACGCTGGTGGCCGCCGCGAATG-TG-TGGGGCTGGAGC-AGCGTGCTTGTTTGAGAAGAG
ATGGAGATGAGATCCATGGAAAGAGGCAGGGGATGGAGAGATAGAGG--TACGGGATGGGAGAGTGAACGAAAGAATGAG
TGGATGTTGGGATAAGGA-AGAGAAGAACGGTTGATATGCCCCCGCGTGCGACGTGTGGCAAGCCGGGAAGGCAGCGGAC
ACGAGTGAGCGATCCG----------------------------------------------------------------
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>chr5D_1532
AATTTC-CTGC---------------------------------------------------------------------
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---------------------AACAATGCCCTTGTTGCAAAATCTCTTCTTCTCTAACTTTCTGCAACAGGAGTCATGTT
ACAAAAAA---TCTT---CTCTAATTCTCTGCAACAAGACCTCTATTGC-AAAATCTTCTCTTCTCTAATTTCATGCAGC
AAGACCCCTGTTGCAAAACATTTTCTTCTCTATTTTTCTGCAACAAGACCCTTGATGTAGAA---CTTCTTCTCTATTTT
TCTGCAACAAGACCCTTGTGACAAAACCTCCATTGCAATAGAACCCAAGATCTTCAGCCTCTTCTATGTATTCCTGCAAC
AAGACTGTTGTTGCGAAAACATGCAAGAACACCGACCT-TGCAACAGAGAGAGCACCCCGTGGTCTCTACAGCACCCGTG
-TTTTTACGACGGAGGAAGGACGCTAGTGCCCGCCTCCGATG-TGGTGGGGTTGTAGCAAACATGCTTGTTTGACAAGAG
GTGGGGATGAAATTCATGGAAAGAGGCAGGGCGTGGAGAGAGAGAGAGATACGAGATGGGAGGGTCA-------------
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>chr3D_1532
AATTTC-GTGT---------------------------------------------------------------------
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---------------------GACAATGCTCTTGTTGCAAACTCTCTTCTCCACTAACTTTTTGCAACAAGAGCCATGCT
ACAAAAAT---TCTTTTTCTCTGATTTTCTGTAACAAGACCTTCATTGC-AAAATCTTCCCTTCTCTAATTTTCTGCAAC
AAGACCTTTGTTGCAAAACTTTTTCTTCTCTATTTTTCTGCAACAAGACCATTAATGCGAAA---CTTCTTCGCTG-TTT
TGTGTAAAAAGGCCCTTGTTGCAAAATCTCCATTGCAATAGGACCCAACATCTCCAGCCTCTTCTATGTATTCCTGCAAC
AAGACTATTGTTGCGAAAACTTGCAGGGACGCTGACCACGGCAACGGAGAGAGCACCCCGTGGTCACTGCAGCACCCGCA
-TTTTTACGGCGGAGGAAGGACTCCCGTGGCCGCCGCCAATGTTG-TGGGGTTGCATC-AACGTGTTTGTTTGAGAAGAG
GTGGGCATGAGATCCATGGAAAGAGGCAGGGGATTGAGAGATAAAGG--TAGGGGGTGGGAGAGTCAACATGAGAATGTG
TGGCTGTTG-----------------------------------------------------------------------
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>chr1A_1534
----TTTCTGC---------------------------------------------------------------------
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---------------------AACAATGCTCATGTTGCAAAACATTCTCTTATCAATTTTTCTGTAACAAGACCCCTGGT
ACAAAATACTTTCTT---CTATAAATTTCCATAACAAGACCTTTGTTGTAAAAATCTTCTCTTCTCTAACTTTCTGCAAC
AAGACCCATGTTGCAAAACTTTTTCTTCTCTATTTTTCCGCAACATGGCCCATGTTGCAAAATCTCTTCTTCTCTATTTT
TCTGCAACAAGGCCCTTGTTGCAAAACCTCCATTGCAACATGAACCAACATTGCCATCCTCTTCTATGTATTCCTGCAAT
AAGACTGTTGTTGCGAAAACTTGCAAGAACGCCGACGGCTACAACGGAGAGAGCACCCCGTGGTCTCTGCAGCACTCCTG
-TTTTTGCAGCCGAGGAAGGGCGCCGGTGACCACCATCGATG-TGATGGGGTTGGAGC-AGCGTGCTTGTTTGAGAAGAG
ATGGGGATGAGATCGATAGAAAGAGGATGGGGATGGAGAGATAGAGG--TAGGGGATGGGAGAGTCAATGGAAGAATGCC
TGGCTATTGGGATAATGATAGAGAAGAATAGTTGATGTGCCCCACG-TGG-ACGCGTGGCAAGCGGGAAAGGCAGCGGAC
ACGAGTGAGAGATCCGCCGACTGATT------------------------------------------------------
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>chr2D_1544
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-----------------------CAATGCTCTTATTGCAAAATCTTTTCTTCTCTAACTTTTTGCAACAAGAGCCATATT
ACAAAAAATCTTCTT---CTCTAATTTTCTACAACAAGACCTCTGTTGC-AAAATCTTCTCTTCTCTAATTTCTCGCAAC
AAGACCCCTGTTGCAAAAAAA-TTATTCTCCATTTTTCTACAACAAGACCCTTGATGCAAAA---CTTCTTCCCTATTTT
TCTGTAACAAGACCCTTGCTGCAAAACCTCCATTGCAATAGGACCCAACATCTCTAGCCCCTTCCATGTATTCCTGCAAC
AAGATTGTTGTTGCGAAAACTTGCAAGAACGCCGACCGCTACAACGGAGAGAGCACCCCGTGGTCTCAACAGCACCCGCT
-TTTTTACGA-CGAAGGAGGACGCCGGTGGCCGCCGCCGATG-TGGC-GGCTTGCAGC-AACGTGCTTGTTTGAGAAGAG
GTGGGGAGGAGATCCATGGAAAGAGGCAAGGGATGGAGAGATAGAGG--TAGGGGATGGGAGAGTCAATGTGAGAATGTG
TGGCTGTTG-----------------------------------------------------------------------
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>SNPs
-S--SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------S----------S--------------------------------------
------------S-----------------------------------------S---S-----------S---------
-----S--------------------------S---------------S--------------------S----------
------------------------------S----------S---S----------S-----------------------
-------------S---------------------S--------S-------S--------------S-S----------
-----------------S-------------S-----------S------------------------------------
---S-----S------------S------------------------------------S--------------------
---------------S------SSS--S--------------------------------S-SS---------S------
S-------S-------S--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_935
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-----------------------------------ATTCCTCCTCCTCTCCCCAC-------------------------
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>reverse_2323
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--CCTCAGATGCACCTGGTACC----------------
