>input_sequence_83231
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-----------------------------------------------------------------ATGGCCGACGTTCAG
CTGAATCTAGACGGCGGGGCGACGGCGGTGGAGGCAGAGCCTGTCGAGTGCAGTAGGCGTGTGTTCATATGCCTAGTGGG
TTGCCTCACCGTCACGCTCGGCGTCATCCTAGCATGGATGTTCGTGTACGAGAAATCCTGTCGGCCATTGTCGACCGCGG
CCAAGCTCTTCGTCGTGCTTCTGACCGGCGCTGTCTCATTCTGCTTTGCCCGCTCTTTCGGCAAGTTTGCTCTTCTCCTT
GTCGAGTGGTACCACGGCAATCCCGAGGGAGAGAGGCTTGTGGATAGCTTGATCCAATCCGATCGGCCCTTGATCAACAT
GTTGTAG-------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G481100
GGCAAGCACACCAAAACAAAAAATGTGTCTTGTGGAACATATATATAAACGAATTACAAATTGAGTGAAAGGTGTCCGAC
ACAAAAAGATA------CAGTTACATTCAATTAAGGA-GGGTGGAAACTATT-----------------TTGCAGCTAAA
TATGTAGCCCACACG-------TCAGTTTAATTTTGTTTCATCTCTATATGAAGCCAAGCCT-------CAGGATGAACG
CAGTGGCCAACTTCACCGGTGGGCAATAAAACCTGA--------------------------------------------
-GGTCCATCAAGAACTTGGAGACAGTGATGAGTGCGGCGAAGAAGAAACCCGACATGTAGATGAACACGTGCCTGCACCA
CTGAAACGGAAAGGTGTGGCTGGTCCCGGGTGCACACACGCCCCTTATCTCAGCCTTTGATTTATTTCGAGATTCGTAGC
ATGTGTGACTCCTCGCAGAGCATCAGTGACCGACTCTGTTAATTGCCTGGGGCAGACTATGTTTCGTGTTTTTACGTGAC
ACTCACTGATTGCTACAGACTTGATTCCCTCTCCGATGCGTAATTTGCTCATGTTCTGCCAGCGCTGTTGCTGCCGCACG
CCCAACAGCCATGCTGT-----TTTTTTTTTTTGAGGGAACAACAGCCGTGCTGTTGCTGCTGCGACTGATGAGACAGTA
TGCCTGGCCCGTGACGGCATGGCCCACATACGTCTCCGTCCCATTTATTACTTCAACTCGTGGTATGGTACCAAGCCAAT
ACTTCTCCTTGTCGGGGATGCATGGCTACCAAAAGTCCAAAACCAACACGGACACAGGCA----TGTCATGTTTGATTCT
AACACCGAGGAAATTAACTTAGGTATTGCCG------TATTGGGTTAAGT---TGATCAGCCATCACAAGAGTCCCTAAG
AATAAGCCACGCAGCCGTCGTCCAACTGTCAGATCCTAAAGGCTA-GGACAAGGAGTAACGTGTACAAACAGTCAACATA
TACCACATGCGTTAGCACCGACAATCGAAATCACACGGGCCCGTCGGACAC---GAGACCGGGACATGGCCGACGTTCAG
CTGAATCTAGACGGCGGGGCGACGGCGGTGGAGGCAGAGCCTGTCGAGTGCAGTAGGCGTGTGTTCATATGCCTAGTGGG
TTGCCTCACCGTCACGCTCGGCGTCATCCTAGCATGGATGTTCGTGTACGAGAAATCCTGTCGGCCATTGTCGACCGCGG
CCAAGCTCTTCGTCGTGCTTCTGACCGGCGCTGTCTCATTCTGCTTTGCCCGCTCTTTCGGCAAGTTTGCTCTTCTCCTT
GTCGAGTGGTACCACGGCAATCCCGAGGGAGAGAGGCTTGTGGATAGCTTGATCCAATCCGATCGGCCCTTGATCAACAT
GTTGTAGGTGCATA-------GTTTTTTTTTCCG--AGGTTTTGTAGATGCATAGTTTGATCATCTTTTCATCATTAATT
TTCAAACACTGT-------AGCGTCTAGAAT-ATATACC---GTTACTAAAGTGTAATGATTTTTTTGTTTAATTCTTTG
TATGTGCAATGAGATTGTTCCACATGTTGC--------------------------------------------------
--------------------------------------ACAAACGTCTTTTTCGATGAACACCACGCTCATCTCCTCCAC
CCGTTGCCGACAATCGCATCTCCTC-------------GCCGCCTCCTCCAAAGCCTAGGGCATCAGAATTCCATCATCA
CTTTTTTTTTGCACCTACAAATCTGGATCTGCTACTAAATGGTAGTCCTCTTAGAGTCTCTCTCCATCTCATGATATCTG
GACACAACAAGA---GGACTCAATTCTCCGGTGGACACGATGGCAAGACAATTAAGCTAACACCTCTCACGCAGCATGGT
TAAGAACAGAGCACACAAACACCACTGATTTCCAGCTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCGCTACAGTCTCGCCCCCAGGACATTGAAATCCGCCGATTCGGCCCGTTTTTGGGCCCGGCGCTCG
CAGGCCGAACCCGGCGCATTGGGGAGCGCTCGGGGACTCCGGCGCAAGGAAAAAGCACGTCTGGCCCACACCATCAGGCG
AAAAGTCAAGCATGTCTTCCAGATTCGCCTCCCACCCCCCGCGCGCTCGGCCGCCAACCGGCTGATCCCGGCGCCGCCCA
CTGCCCACCACCGCTAGATTGCCCATTCCCCGCCGCAAAAAGAGCAGAGGTTGTGCCGAGGAAGCCTACTGCATGCTCTG
CTCTGACTAGT
>chr7A_3
CAACA---CACCAAAACAAAAA--GTGTCTTGTGGAACATAC------ACAAATTACAAATTGAATGAAAGGTGGCTGGC
ACAA------A------CAGTTACATTCAATTAAGGA-GGGTGGAAACTATTAAGAACATCGGTCTCATTTGCAGCTAAA
TATGTACTGTAGCACACACACATCAGTTTGATTTTGTTTCATCTCTATATGAAGCCAAGCCTGGAGCCCCAGGATGAACG
CAGGGGCCAACTTCACCGATGGGGGTGTTGTACCGAAGCGGGGCTCTGAATCTAAGAAATAACACACAAACGAAAAAATG
TGGTCTGTCAAGAATTTGGAGACGGTGATGAGTGCGGCGAA---------CGACATGTAGATGAACACGCGCCTACACCA
CTGGGCAGGCTCCGACGCCACCACCATGTTATGATCCTCGACGACGTCGGCCATGGATGCGTGCAGTGG-----------
------------------------------CGATTCTATGTGTTGGCTGTGGGTCAGCTGACTTCACAACTT-AAAAAAA
ACGAACTAAAGCACGGTACATTGTGAAGAGAAAAA-TTAAAACATTAGCAATTACCCCACACTGTAGATTCTTGGGGCAA
TCGTGTAAAAAGTACTAGCCAGTATGTACTTTCGTAGGATCTACAGCTGTAGAGATAAATTTAGGCGAAAAGT-------
-----------------------------------------CATTTATTCCTTCAACTCGTGGTACGGTACCAAGCCAAA
--TACTTCTTGTCGGGGATGGCTACG-------------AAACCAACACGGACACAGGCACGCACGTCATGTTTGATTCC
AACACCGACGAAATTGACTTAGGTATTGCCGTACGTATATTGGGATAAGT---TGATCAGCCATCACAAGAGTCCCTAAG
AATTAGCCACGCAGCCGTCGTCCAACTGTCAGATCCTAAAGGCTA-GGACAAGGAGTAACGTGTACAAACAGTCAACATA
TACAGCATGCCTCAGCACCGACAGTCGAAATCACACGGGCCGGTCGGACACGACGAGACCGGAACATGGCCGACGTTCAC
CTGAATCTAGACGGCGGCGCCACGGCGGCACAGGCAGAGCCCGTCGAGTGCAGTAGGCGTGTGTTCATATGCTTGGTGGG
TTGCCTCACCATCGCGCTCGGCATCATCCTAGCATGGATGTTCGTGTATGAGAAATCCCTTCGGCCATTGTCAACCGCGG
CCAAGCTCTTCGTCGCGCTTCTGACCGGTGCCGTCTCCTTCTGCTTTGCCCGCTCTTTCGGCAAGTTTGCTCTTCTCCTC
TTTGAGTGGTACCACGGCAATCCTGAGGGAGAGAGGCTTGTGGATAGCTTGATCCAATCCGATCGGCCCTTGATCCACAT
GTTGTAGACGCATAGTGTTTTGTTTTCTTTTTTG--AGGTTTTGTAGATGCATAGCTTGATCATCTTTTCATCATTAATT
TTCAAACACTGTGTTAATTAGCGTGTAGAAT-ATATATACCTGTTATTAAAGTGTAATGATTTTTT-ATTTAATTCTTTG
TATGTGCAATGAGACTGTTCCACATGTTGC--------------------------------------------------
--------------------------------------ACAAACGTATTTTTTGATGAACACCACGCTCATCTGCTCCAC
CTGTTGCCAACAATCACATCTCCTCCACCTGCTTCCTCGCCGCCTCCTACAATGCCTAGGGCGTCAGAATTTCACCATCA
CC-TTTTTTTGCACCTACAAATCTGGATCTCGTACTAAATGGTAGTCCTCTCAGAGTCTCTCTCCATCACACGATATCTG
GACGCAACAAGA---GGACTCACTTCTCAGGTGGACACGACGGCAGGACAATTAAGCAAACACCTCTCAGGCAGCATAGC
TAAGAACAGAACACACAAACACCAGTGATTTCCACCTCCC----------------------------------------
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>chr7A_5
----AGCACACCAAAACAAAAA--GTGTCTTGTGGAACATAC------ACGAATTACAAATTGAATGAAAGGTGGCCGGC
ACGA------AAAAATCCAGTTACATTCAATTGAGGAGGGGTGGAAACTATTAAGAACATCGGTCTCATTTGCAGCTAAA
TATGTACTGTAGCACACAC----CAGTTTAATTTTGTTTCATCTCTATATGAAGCCAAGCCTGGAGCCCCAGGATGAAGG
CAGGGGCCAACTTCACCGGTGAGGGTGTTGTACCGAAGCGGGGCTCTGAATCTAAGAAATAACACACAAATGAAAAAATG
TGGTCCGTCAAGAATTTGGAGACGGTGATGAGTGCGGCGAA---------CAACATGTAGATGAACACGCGACTGCACCA
CTGGGCAGGCTCCGACGCCACCACCATGTTATGATCCTCGACGACGTCGGCCATGGATGCGTGCAGTGG-----------
------------------------------CGATTCTATGTGTTGGCTGTGGGTCAGCTGACTTCACAACTTTAAAGAAA
ACGAACTAAAACAC-GTACATTGTGAAGAAAAAAAATTAAAACATTAGCAATTACCCCACACTGTAGATTCTTGGG----
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----------------------------------------------ATTCCTTCAACTCGTGGGGTA-TACCAAGCCAGT
ACTTCTCCTTGTCGGAGATAAACATTGTGA-------------------------------GTATGTCATGTTTGATTGC
AACACCGGGTAAA----------TATTGCCG------TATTGGGTTAAGT---TGATCAGCCATCACAAGAGTCCCTAAG
AATAAGGCAAGCAGCCGTCGTCTAACTGTCAGATCCTAAAGACTA-GG---AGGAGTAACGTGTACAAACAGCCAACATA
TACAGCATGCGTTAGCACCGACA-TCGAAATCACACGGGCCGGTCGGACA----GAGACCGGGACATGGCCGACGTTCAG
CTGAATCTAGACGGTGGCGCGACGGCGGTGGAGGCGGAGCCCGTGGAGTGCAGTAGGCGTGCGTTCATATGCTTGGTGGG
TTGCCTCACCGTCGGGCTCGGCGTCATCCTGGCATGGATGTTCGTGTACGAGAAATCCTGTCGGCCATTGTCGACCGCGG
CCAAGCTCTTCGTCGTGCTTCTGACCGGCGCCGTCTCCTTCTGCTTTGCCCGCTCTTTCGGCGAGTTTGCTCTTCTCCTC
ATCCACTGGTACCGTGGCAATCCCGAGGGAGAGAGGTTTGTGGATAGCTTGATCCAATCCGATCAGCCCTTGATCAACAT
ATTGTAGATGCAT--------------TTTTTTT--AGGTTTTGTAGATGCATAGTTGGATCATCCTTTCATCATTAATT
TTCAAACTCTTTGTTAATTAGCGTCTAGTAGAATATACC---GTTATTAAAGTGTAATGATTTTTT-GTTTAATTCTTTG
TATGACAAATGAGACTGTTCCACATGTTGC--------------------------------------------------
--------------------------------------ACAAACGTATTTTTCGATGAACACCACGCTCATCTGCTCCAC
CCGTTGCCGACAATCACATCTCCTCCACCTGCTTCCTCGCCGATTCCTCCAATGCCTAGGGCGTCAGAATTCCACCATCA
CCC-TTTTGTGCACCTACAAATCTGGACCTGGTACTAAATGGTA-TCCTCTCAGAGC--CTCTCCATCTCACGATATCTG
GACACAACAACAAGCGGACTCAATTCTCCGGTGGACACGACGGCAAGATAATTAAGCAACCACCTCTC------------
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>chr7D_674
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-----------------------------------------CATTCATTCCTTCAACTCGTGGTACGGTACCAAGCCAAA
--TACTTCTTGTCGGGGATGGCTACG-------------AAACCAACACGGACACAGGCACGTACGCCATGTTTGATTCC
AACACCGACGAAATTGACTTAGGTATTGCCT------TATTGGCTTAAAT---TGATCAGCCATCACAAGAGTCCCTAAG
AATAAGCCACGCAGCCGTCGTCCAACTGTCAGATCCTAAAGGCTA-GGACAAGGAGTAACGTGTACAAACAGTCAACATA
TACCACATGCGTTAGCACCGACAGTCGAAATCACACGGGCCGGTCGGACA----GAGACCGGGACATGGCCGACGTTCAG
CTGAATCTAGACGGCGGCGCAACGGCGGTGGAGGCGGAGCCCGTCGAGTGCAGTAGGCGTGCGTTCATATGCTTGGTGGG
TTGCCTCACCGTCGGGCTCGGCGTCATCCTGGCATGGATGTTCGTGTACGAGAAATCCCTTCGGCCATTGTCGACCGCGG
CCAAGCTCTTGGTCGTGCTTCTGACCGGCGCCGTCTCCTTCTGCTTTGCCCGCTCTTTCGGCAAGTTTGCTCTTCTCCTC
ATCCACTGGTACCGCGGCAATCCCGAGGGAGAGAGGCTTGTGGATAGCTTGATCCAATCCGATCGGCCCTTGATCCACAT
G----------------------------------------TTGTAGATGCATAGTTTGATCATCTTTTCATCATTAGTT
TTCAAACGCTGTGTTAATTAGCGTCTAGAAT-ATATGCC---GTTATTAAAGTGTAATGATTTTTC--TTTAATTCTTTG
TA------------------------------------------------------------------------------
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>chr7A_812
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-----------------------TATTGCCGTA------TTGAGTTAAGTTGATGATCAGCCATCACATGGGTCTCTAAG
AATAAGGCACGCAGGCGACGTCC----------TCCTAAAGACTATGGAGAAGGAGTAACGTGTATAAACAGTCAACATA
CACAACATGCGTTAGCACCGACAATCGAAATCACACGGGCCCGTCGGACAC---GAGACCGGGACATGGCCGACGTTCAG
CTAAATCTAGCCGGCGGCGCGACGGCGGTGGAGGCGGAGCCCGTCGAGTGCAGTAGGCGTGCGTTCATATGCTTGGTGGG
TTGCCTCACCGTCGCGCTCGGCGTCATCCTGGCATGGATGTTCGTGTACGAGAAATCCTGTCGGCCATTGTCCACCACGG
CCAGGCTCTTCGTCGTGCTTCTGACCGGCGCCGTCTCCTTCTGCTTTGCCCGCTCTTTTGGCAATTTTGCTCTTCTCCTC
ATCCACTGGTACCGTGGCAATCCCCAGGGAGAGAGGTTTGTGGATAGTTTGATCCAATCCGAACAGCCCTTGATCAACAT
ATTGTAGATGCAT--------------TTTTTTTTTAGGTTTTGTAGATGCATAGTTGGATCATCCTTTCATCATTAATT
TTCAAACTCTTTGTTAATTAGCGTCTACTAGAATATACC---GTTATTAAAGTGTAATGATTTCTT-GTTTAATTCTTTG
TATATGCAATAAGACTGTTCCACATGTTGCCAACAGCCGGCCACGTCTCTCCACTTGCTTCCTCGCTGCCTCCGCCATCT
CCTCCGGCGTCAGCAAGGCCATCATCACTGTTTCTTGCACAAACGTATTTGTGGATGAACACGACGCTCATCTCCTCCAC
CCGTTGCCGACAATCGCATCTCCTCCACCTGCTTCCTCGCCACCTCCTCCAACGCCTAGGGCATCCGAATTCCACCATCA
CC-TTTTTTTGCACCTACAAATCTGGATCTGGTACTAAACTGTT-TCCTCTCGGAATCTCTCTCTATCTCACGTTATCTG
GACACAACAAGA---GGACTCAATTCTCCGTTGGACACGACGGCAAGACAATTAAGCAA-CACCTCTCACGCAGCATGGT
TAAGAACA------------------------------------------------------------------------
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>SNPs
SSSS------------------SS-----------------SSSSSSS----------------S---------S---S-
----SSSSSS----------------------------------------------------------------------
------SSSS-SSSS-----------------------------------------------------------------
---S-------------------SSSSSSSSS-S----------------------------------------------
------S-------S--------S-----------------SSSSSSSSS-------------------S----------
---SSSS--SSSS-SSSSSSSSSS-SS-SSSSS-SS-S--S-SSSSSSSS-SSSSSS--SS-SSSS-S-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S-SSS---S---S--SSS-SSSSSS---SSSSS----SSSS-S
--SS---S-SSSSSSSSSSS---SSSSSSSSSSSS--SSSS-SS--SSSS--SSS-SSS--SS-SS-S-S--SSS-SSSS
S-SSSS-SSS-SSSSSS------S-S-SS---S-SS---S-S-----S--SSS-S-SSSSS-SS-SSSS-S-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------------------------------
--------------------S--SSSSSSSSSSSSSSSS----------------------------------------S
---------------S----------------------------------------------------------------
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-----------------S-----------------------S------------------------------S-S-----
-------------S------------------------------------------------------------------
-------------------------------S-----S-----------------------------------------S
S-------------------------------------------------------------------------------
-------S------------------S----SS-----------------------------------------------
----------------------------------------------S-------------------S-------------
--------------S-----------------------------------------------------------------
----------------------------------------------S---------------------------------
----------------------------------------------------S---------------------S-----
-SS----------------------------S-------------------S-------------------S--------
----------------------------------------S----------------S----------------------
----------S-------------S---------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_367
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---------------------------ATGAGTGCGGCGAAGAAGAA---------------------------------
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>reverse_2490
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---------ACCGCTAGATTGCCCATTCC---------------------------------------------------
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