>input_sequence_83221
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-------------------ATGGTGAGGCTAATGGAGATCTCCAAGAAATGGCACGGCAGTGCTAGCAGCAAGGTCACCT
CCCCTACCGCCGCCGCTGGTGCAGCGGCCACGGTGGCGTCGTGCCCGCGGGGCCATTTCGCGGCCTACACCCGGGACGGC
AGCCGGTTCTTCGTTCCCATCGGCTGCCTCACCAGCGACACCTTCCGGGAGCTCCTCAACATGGCCGAGGAGGAGTTTGG
CAAACCTGGCGACCGCCCCATCGTGCTGCCGTGCTCCGTGGCCTGCCTTGAGCAGATCCTCGCCGACTTCCGGGCCACCT
CCAAGAAGCACACCGGTAGCGGCAGGACCAAGATTTGGTAG---------------------------------------
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>chr2D_1_TraesCS2D01G201600
GGGATATATCATATCCATGGATAAATGTACCATGCTGCCGTACGTACCCGGAATCTGGAATTATTTTGAGGGTTGGAATC
TGGAATTTTGATTGCATGCATGTGCTCCCTTGGCGCGACAAGTGTCCTAGACATATTTGTGGTCC---------------
-----------------AAGATGACCCAGGTTTTGCTAGCGAAGCACACGACCCTACTGTCCTCCGCTGCCTGTATGACC
ACATG----------ATTATTATATGTTGATTTTATTTTCTGATTATCTGTAATACCAAATATGGATATACAGTATAACA
TGCGAGGGAGGCCAGGTTTTGGGGGCAAAAATAT-CCATGCACCGGACGTACGTACTCTGCAAGCTTTACTA-TACACTG
AGAAAGATTA-------------------------------AATACAGTAAACTGCGCCACTTATGTACGTGCACAATAA
CTCGTGACAGTTTGAATACACGTACGACAAA-------------------------------------------------
------------------------------------------------------------------------------TT
ATGTTTTC-------------------------------ACCGTACCGGTTGGGCTATATTATGCA---TTATGCATGTT
AAAACTAGAAAAGTTTTGATGATGTATCATCTAGT-----------------ACTCCTAAACATCACCTAAAAAGCTTGG
TAATACAGTACTACTGTA-----------------------------------------TTATTTAACCATGTTAATAAG
TGTGTGAAACTGCGAATATGATGTCAGATGGAATGATGCACAAATATTTCTTGTACATATTCTCACTTGCTTGATGGAAC
ATTGCCCTTTTTATTCTTTTTGTCATCATCAGGATGAATTTGACATATATACCTATCTTCCAAAAGTTCCAACATCACAC
GCCACACAAATACAGA-AATGAGGAATTATGTTCTCATCTGCCCCCTCCTTTAATTTTCTCATTAACTTCTCCAATCCAT
CCCAATCCTCTGCATGCAAATGCCAGAGCCCCACTGCAGCCTGAATCGCCGCAGCGCCACACTAAGCATCTATTTATACC
CCACCTGAGCTCCCGCTACCTTCACATCTCACTGGCCACAAGCTAAATGCAGGAAACACAACACACGGACACATACACAC
----ATCTATCGATCGATCATGGTGAGGCTAATGGAGATCTCCAAGAAATGGCACGGCAGTGCTAGCAGCAAGGTCACCT
CCCCTACCGCCGCCGCTGGTGCAGCGGCCACGGTGGCGTCGTGCCCGCGGGGCCATTTCGCGGCCTACACCCGGGACGGC
AGCCGGTTCTTCGTTCCCATCGGCTGCCTCACCAGCGACACCTTCCGGGAGCTCCTCAACATGGCCGAGGAGGAGTTTGG
CAAACCTGGCGACCGCCCCATCGTGCTGCCGTGCTCCGTGGCCTGCCTTGAGCAGATCCTCGCCGACTTCCGGGCCACCT
CCAAGAAGCACACCGGTAGCGGCAGGACCAAGATTTGGTAGTAGACATCCTAATTCCATTAATCAATTCCGCCGTTGATC
ATTGTTAATTAGTGTGAGACCGATCCATCGATGATCAATGGTCCCTTAATTTTTGGGAGCGTAGTTCCATCATGTCGATT
TTTTTT-CCTTCCCTCCTGGTAATGGTTTGTACTGTAGATGCCAATGCTCGTGTTTTCCAAGAGGGGGGATGTGGTTCTA
AGTTGACATGACGTAAGCATCTAGCTAGCCAGTTATCCATC-TTTTTTCTTATTCTTCATTTAATTCTTCTCCTTGTTTG
TGTC---GATGAAAATACGTCCTAGAGGCATTCCCGCGATTACGTTATTTTTTAATGTATTCATAAGTTATTTGCATTGT
CGTTCAACTTG-TCATTGATATGTATCAATAAGTATGTGGTTTGTTTATGATATTGGATATTGTATGATAGTTGTTCTAA
TGATCCCTAATTGATAAGGCTGCGTGGACAAGCATCCTTTGAATAGTATATGATTCGGTTGAGAAAAATATTTCACAAGT
CATTGACATAGAGATACTAACCCGATAGTATATATGGACTTGA--ATGGGAATAATCGAGTTGGACAAACCCGACTTGAG
ACTTCGA------ATGTACTCAGGATGTGAATCAACTTACTTAGTGTCTATCAAACACTATTTGGTAACTGAGTAGTTAT
AAATGTAGCTTTTCGGCTAGTGGTGAAACATGTC----------------------------------------------
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------------------------------------------------------------------------------AG
TAACACGTAGTTGGTCAAGATGTGATTTGCAC------------------------------------------------
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--------------ATCTAATGAAGGGATATAATTCACTAATACTGGAAAAGGCTACTAGCGGCTGCAAAAATCGTCATT
AATGGTGTGTAGACGGCACGTCACTAGTATCACGCCACCACTAGTAACTTGTTACAGTAGCGTGTTCATGGCACACCACT
AGTAAAACTTACCAGTGATGTGTAAAGAGCACGCCAATAATAACTAATATACTGGTACCGTGTGTCGTTTAACACACACT
AATAATGTAGATATGCTTTCGTCGATAACGTGCCAGTGGGG
>chr2B_1
GGGATATATTATATCCATGGATAAATGTACCATGCTGCCGTACGTACCCGGAATCTGGAATTATTTTGAGGGGTGGAATC
TGGAGTTCTGATTGCATGCATGTGCTCCCTTGGCGCGACAAGTGTCCTAGGCATATTTGTGGTCC---------------
-----------------AAGATGACCCAGGTTTTGCTAGCGAAGCACACGGCCCTACTGTCCTCCGTTGCCTGTATGACC
ACATG----------ATTATTATATGTTGATTTTATTTTCTGATTATCTGTAATACCAAATATGGATATACAGTATAACA
TGCGAGGGAGGCCAGGTTTTGGGCCCAAAAATAT-CCATGCACCGGACGTACGTACTCTGCAGGCTTTACTTGTACACCG
ATGAAGATTCTTTTTTTTTTGCGGGGGACACCGATGAATTCAATACAGTAAACTCCGCCACGTATGTACGTGCGCAATAA
CTCGTGACAGTTTGAATACACGTACGACAAA-------------------------------------------------
------------------------------------------------------------------------------TT
ATGTTTTCAACGTACCTGTTATGGTGCATTCAAAAACAAAACGTACCAGTTGTTGTATATTAAGCAGCATTA--CATGTT
AAAATTACAAAAGGTTTGATGATGTATCATCTAGTAACTAGCTTGACAATACACACCTAAACATCACTGGAAAAATTTGG
TAAAACAGTAC-----TA-----------------------------------------TTATTTAGCCATATTAATAAG
TGTGTGAAACTGCAAATATGATGTCAGATGGAGTGATACACAAACATTTGTTGTACATATTCTCACTTGCTTGATGAAAC
ATTGCCATTTTACTA-TTTTTGTCATCATCAGGATGAATTTGACATATATACCTATCTTCCAAAAGTTCCAACATCACAC
GCCACACAAATACAGTCAATGATGAATTATGTTCTCATCTGCCCCCTCCTTTAATTTTCTCATTAACTTCTCCCATCCAT
CCCAATCCTCTCCATGCAAATGCCAGAGCCCCACTGCAGCCTGAATCGCCACAGCGCCACACTAAGCATCTATTTATACC
CCACCTGAGCTCCCGCTACCTTCACATCTCACTGGCCACAAGCTAAATGCAGGAAACACAACACACAAACACAGACACAC
ATCTATCTATCGATCGATCATGGTGAGGATAGTGGAGATCTCCAAGAAATGGCACGGCAGTGCTAGCAGCAAGGTCACCT
CCCCTACGGCCGCCGCTGGTGCAGCGGCCACGGTGGCGTCGTGCCCGCGGGGCCATTTCGCGGCCTACACCCGGGACGGC
AGCCGGTTCTTCGTTCCCATCGGCTGCCTCACCAGCGACACCTTCCGGGAGCTCCTCAACATGGCTGAGGAGGAGTTTGG
CAAACCTGGTGACCGCCCCATCGTGCTGCCGTGCTCCGTGGCCTGCCTTGAGCAGATCCTCGCCGACTTCCGGGGCACCT
CCAAGAAGCACAACGGTAGCGGCAGGGCCAAGATTTGGTAGTAGACACCCTGATTCCATTAATCAATTCCGCCGTTGATC
ATTGTTAGTTA--GTGAGACCGATCCATCGATGATCAATGGTCCCTTAATATTTGGGAGCGTAGTTCCATCATGTCGATT
TTTTTTTCCTTCCCTCCTGGTAATGGTTTGTA--GTACATGCCAATGCTC-TGTTTTCAGGAGGGTTGTTG------C-A
AGTTGACATGACGTAAGCATCTAGCTAGCCAGCTATCCATTTTTTTTTCTTATTCTTCATTTAATTCTTCTCATTGTTTG
TGTC---GTTGAAAATATGTCCTGGAGGCAGTCCCACGATTACGTTATTCTTTAATGTATTCATGAGTTGTTTGCATTGT
CGTTCAACTTG-TCATTGATATGTATCAATAAGTATGTGGTTTGTTTATGATATTGGATATTGTACGATAATTGTTCTAA
TGGTCCCTAATTGATAAGGTTATGTGGACACACATCTTTTGAATAGTACATGATTCGGTTGATAACTATATTTGACAAGT
CATTGGCATAGAAATACTAACCCAGTAGTATATATGGACTTGAAGACGGGAATAATCGAGTTGGACAAACCCGACTTGAG
ACTTCGAATGTACATGTACTTAGGATGTGAATCAACTTACTTAGTGTATATCAAACACTACTTGGTAACCTAGTAGTTAT
AAATGTAGTTTTTCGTTATTTGCTCCAATATTCCAAAATAATTCTCCGTAAATTTTCAGCTCATTTGGAAATGTTCAGAA
TAGGTAACTCTGACGTAGCTTTTCTGGGTTCAGAATTCCAGCTGCCGGTATTCTCCCTCTTTGTGTTGACCTTGCATATT
ATGAGAGAAGAGGCATTAGAATTACTCCACAAAGCATTATTATGCATAAAAACATAATAATTAACAGTAGGTAAACATGA
TGGAAAATGAACGTATCATTACCCCCCGAGTGCGGGATTTTTTATGGTGATCTTCAATACCATCGTGTTGCCTATCAAGC
ACAACCTCTCTTCCCAAGACTTTGTCGCCCTCCTTGCCTTTCCTGGATTCACCAATAACAACATTATTTTATTAGCAGAT
TCGGCTATGCTAGGCCGAATTAACATTTTTTTCCCTCCATGTCCATGGTGTTTATAGGGAAGGGTTGTTTATCAACTTGC
ATCTTAGCAAAATTCAATCGTCTGTCATTAATGGCCGATTGTATCTGTCGTCGAAAAACATGGCAATCGTTAGTAGCATG
AGAAAATAAATTATGATACTTGCAATAAGCACGCCGTTTAAGCTCCTCAAACGGCGGTATGGTGTGTGATATTCTAATCA
TCTTATCTTGCAACAGGGCATCAAATATTCTATCACACTTAGATATATCAAAGTGAACTTCATCCCATCATCACGATCTT
GCAAATGGGCTTAAGAGCATTGCATGTATAGGGTTTGGGCTTTGAGGACCAAACAAACTCAGTAGTATAGACATCAACCT
CATCGTCCGAATTATCATCATTGTATTCAACCATATGCATTCTAGGACGATCCGTTGTAGACCTATGAATCTCGGGCAAG
TAACATGTCGTCGGACAAAGGGAATTGCATACGGGATAAACCGAATTCTTGACATCATGGTTCAACCGAGAAAAGACCTT
CATGGAATATGTAGGAATCAATATGGGCATCCAGGTCCCGGTTATTGGTTATTGACTGGAGAGGTGTCTCAGTCACGACT
ACATGATTCCCGAACCCGCAGGGTCGCACGCTTAACGTTCGTTGATGCTAGAGTAGTATTTGGATATTTGATGATTGCTA
ACTAAATGTTGTTTGGAGTCCCGGATGAGATCCCGGATGTCACAAAGAGTCTCAGAATGGTTGAGAGGTAAAGATTTATT
TTGGCTCCTAAAAATAAGTGCAGTTTTTTCGGTATTGTACCGTGAAACTTATAGAAGGTACTGGAGAATTCTGAAGGGGT
CCGGAAGTCCACAAGTGGGTCCACCACGACCCAAGGGCTAGCATGGGTTGAGGAGAGGCACCCTAGCCTTATTGGGCTAG
GCGCACCAAGTCCTCAAAAGCCCATGTGGCTAGGGAAAGGAAAAAGTCCTAGTAGGAATAGGATTGGACTTGGAGTCCAA
GTCCTCTCCCCCTTGGCTGCGCCCTAGGGCTTGGAGGGGCTGCTCCTCACGCCCCTCGTTTGGCAGGACCAAGATTTGGT
AGTAGCCATCCTAATTCGATTAATCAATTCCGACATTGATCATTGTTAATTAGTGAGACCGACCCATCGATGATCAACGA
TCCCTTAATATTTGGGAAGGTAGTTCCATCATGCCAATTTTTTTGCCTTCCCTCCTGGTAATGGTTTGTACTGTAGATGC
CAATGCTCGTGTTTTTAGGAGAGTTGTTGTGGTTGCAAGTTGACATGATGTAAGCATGCATCTAGCTAGCCAGGTATCCA
TCTTTTTTCTTATTCTTTATTTAATTCTTCTCCTTGTTTGTGCCTATTGTTAAAAATATGGTCTAGAGACAATCAGGCGA
TTATGTTATTTCCTTATGTATTCGTGAGATATTTGTATTATCGTTGAACATCGTAATTTATAATGTATCAATAAGTACGT
GGCTTGTTTATGATACTGGATATTATATGACGGTTGTTCTAATGGTTCTTAGTTGATAAGGATATGCAGACACACATACT
TTGAATAGTATATGATTTGATTGATGACTATATTTCACAAATCATGAGCATAGAGATACTAACCCGATAGTATGAACTTG
GAGATGGGATAATAGAGTCGGACTAACCTACTTTTAGACT----------------------------------------
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>chr2A_75
--------------------------------------------------------------------------GGAATC
TGGAGTTTTGATTGT----ATGTGCTGCCTTGGCGCGACAAGTGTCCTAGAAACATTTGTGGTCCAAGATGACCCAGGTT
TTTTTTTTTTTGAAGGGAAGATGACCCAGGTTTTGCTAGCGAAGCACACGGCCCTACTGTCCTCCCCTGCCTGTATGACC
ACATGTATACTATTGATTATTATATGTTGATTTCATTTTTAGATTATCTGT-ATACCAAATATGGATATATC-----ACA
AGCAAGGGAGACCAGGTTTCGGGCCCAAAAATATCCCATGCACCGGACGTACGTACTCTGCAGGCTT-ACTG-TACATTG
AGGAAGATGA-------------------------------AATACAGTAAACTGCACCACGTATGTACGTGCACAATAA
CTTGTGACAGGTTGAATACACGTACTTCTCCCTTAAATAGAGATTCCGCTATAAACTATAGAGTACAGCCGAATGAATGA
ACCTATGCTCTATATATATCCAAATGTAGTTTTATAGTGAAATCTTTAAAAGAACTTATATTTAGAAACGGAGGGTGTTT
ATGTGTTC-------------------------------ACCGTACCAGCTGCGGTATACTAAGCA---TTA--AATGTT
TATGTTAGATAAGTTT--ATGATGTATCATCTAGTAACTAGCTTGACAATACACACCCAGACAGTACTCCCTCTGTTTCA
AAATAAGTGACTCAAGTTTATACTAATTTTGTGCTAAAATTAATACAAAGTTGAGTCACTTATTTAGCCATATTGATAAG
TGTGTGAAACTGCAAATATGATAT---ATGGAGTGATACACAAACATTTGTTGTACATTTCCTTAATTGCTTGATGAAAC
ATTGCCCTTTTACTA-TTTTTGTCATCAT-------AATTTGACATATATACCAATCTTCCAAAAGTTCCAACATCACAC
GCCACACAAATACAGTCAATGATGAATTATGTTCTCATCTGCCCCCTCCTTTATTTTTCTCATTAACTTCTCCCATCCAT
CCCAATCCTCTCCATGCAAATGCCAGAGCCCCACTGCAGCCTGAATCGCCT--------CACTAAGCATCTATTTATACC
CCACCTGAGCTCCCGCTACCTTCACATCTCAA--GCCACAAGGCAAATGCAGGAAACACAACACACAAACACAGGCACAC
ATCTATCTATCGATCGATCATGGTGAGGCTAATGGAGATCTCCAAGAAATGGCACGGCAGTGCTAGCAGCAAGGTCACCT
CCCCTACCGCCGCCGCTGGTGCAGCGGCCACGGTGGCGTCGTGCCCGCGGGGCCATTTCGCGGCCTACACCCGGGACGGC
AGCCGGTTCTTCGTTCCCATCGGCTGCCTCACCAGCGACACCTTCCGGGAGCTCCTCAACATGGCCGAGGAGGAGTTTGG
CAAACCTGGCGACCGCCCCATCGTGCTGCCGTGCTCCGTGGCCTGCCTTGAGCAGATCCTCGCCGACTTCCGGGCCACCT
CCAAGAAGCACAACGGTGGCGGCAGGGCCAAGATTTGGTAGAAGAAATCCTGATTCGATTAATTAATTCCGCCGTTGATC
ATTGTTAATTA--GTGAGACCGATCCATCGATGATCAATGGTCCCTTAATTTTTGGGAGCGTAGTTCCATCATGTCGATT
TTTTTT-CCTTCCCTCCCGGCAATGGTTTGTACTGTATATGCCAATGCTCGTGTTTTCAGGAGGGTTGTTGTTGTTGC-A
AGTTGACATGACGTAAGCATCTAGCTAGCCAGCTATCCATC-CTTTTTCTTATTCTTTATTTAATTCCTCTCTTTTTTGT
GTCTATTGTTGAAAATATGTTCTAGAGACAATCATGCGGTTATGTTATTTCGTTATGTATTCGTGAGTTGTTTGTATTAT
CGTTGAACATCATCATTGATATGTATTAATAAGTATGTGGCTTGTTTATGATACTGGATATTGTATGATGGTTGTTCTGA
TGGTCCCTGATTAATAAGGTTATGTGGACACACATTCTTTGAATAGTATATGATTCGGTCGATGACTATATTTCACAAGT
CATTAACATAGAGATACCAAACCGATACTAG-TATGGATTTGAAGATGGGAATAATCAAGTTGGACAAACCCGACTTGAG
GCTTCGAATGTAC------TCAGGATGCGAATCAACTTACTTGGTGTCTATCAAACACTACTTTGTAATTGAGTAGT-AT
AAATGTAGCTTTCTAGTTAGTCGTGAAACATGTTGTG-------------------------------------------
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--ACACGTGGTTGGTCAAGATGGGATTTGCAC------------------------------------------------
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--------------ATCTAATGAAGGAATATAATTCACTAATACTGGAAAAGGCTACTAGCGGCTGCCAAAATCGTCATT
AATGGTGTGTAGACGGCACGTCACTA-TATCACGCCACCACTAGTAACTTGTTATAGTAGCATGTTCATGGCACACCACT
AGTAAAACTTACCAGTGATGTGTAAAGAGCACGCCAATAATAACTA----------------------------------
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>SNPs
---------S--------------------------------------------------------------S-------
----S---------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
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-----------------------SS-------------------------------------S--------S--------
--S----------------------------------------------------------S------------------
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-----------------------------------------------S----S-S-------S---------SS------
----S-------------------------------------------------S------------SSS-----S----
------------SSS---------------------------------------------------S----S--------
-------------S------------------S----S------S----S--------------------------S---
-----------SS-SS----------------------------------------------------------------
---------------S------S--------------------------------------------------S------
-----------S--------------------------------------S-----------------------------
------------------------------------------------------------------SS-----S------
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------------S-------------S------------------------S----------------------------
-----------SS-------------------------------------------------------------------
-------------------------------------S--------------------SSSSS--SS-SSSS--S-S-S-
--------------------------------S---------------------------------------S-------
--------S--------S------------S---------------------------------S----S----------
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--S----------------S-SS-------SS------------------------------S--SS-------------
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----------------S---------------------------------------------------------------
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--------S-------------S---------------------------------------------------------
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--------------------------S----------------------------------------S------------
--------------------------S---------------------------S------S------------------
----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_383
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-------------------------------------------CGGACGTACGTACTCTGCAA-----------------
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>reverse_2102
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---------------------GCGTGGACAAGCATCCTTTG---------------------------------------
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